Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_14370

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_14360 and AO356_14365 are separated by 1 nucleotidesAO356_14365 and AO356_14370 are separated by 195 nucleotidesAO356_14370 and AO356_14375 are separated by 74 nucleotides AO356_14360: AO356_14360 - mannose-1-phosphate guanylyltransferase, at 3,266,289 to 3,266,960 _14360 AO356_14365: AO356_14365 - molecular chaperone DnaJ, at 3,266,962 to 3,267,729 _14365 AO356_14370: AO356_14370 - hydrolase or acyltransferase, at 3,267,925 to 3,268,917 _14370 AO356_14375: AO356_14375 - histidine kinase, at 3,268,992 to 3,271,388 _14375 Position (kb) 3267 3268 3269Strain fitness (log2 ratio) -1 0 1 2at 3266.944 kb on + strandat 3266.944 kb on + strandat 3266.961 kb on + strandat 3266.961 kb on + strandat 3266.961 kb on + strandat 3266.961 kb on + strandat 3266.961 kb on + strandat 3266.961 kb on + strandat 3266.961 kb on + strandat 3266.961 kb on + strandat 3266.962 kb on - strandat 3266.962 kb on - strandat 3266.962 kb on - strandat 3267.146 kb on + strand, within AO356_14365at 3267.146 kb on + strand, within AO356_14365at 3267.147 kb on - strand, within AO356_14365at 3267.307 kb on + strand, within AO356_14365at 3267.308 kb on - strand, within AO356_14365at 3267.308 kb on - strand, within AO356_14365at 3267.308 kb on - strand, within AO356_14365at 3267.478 kb on + strand, within AO356_14365at 3267.478 kb on + strand, within AO356_14365at 3267.479 kb on - strand, within AO356_14365at 3267.520 kb on + strand, within AO356_14365at 3267.521 kb on - strand, within AO356_14365at 3267.688 kb on - strandat 3267.742 kb on + strandat 3267.742 kb on + strandat 3267.742 kb on + strandat 3267.742 kb on + strandat 3267.742 kb on + strandat 3267.743 kb on - strandat 3267.743 kb on - strandat 3267.743 kb on - strandat 3267.754 kb on + strandat 3267.755 kb on - strandat 3267.755 kb on - strandat 3267.776 kb on + strandat 3267.777 kb on - strandat 3267.777 kb on - strandat 3267.777 kb on - strandat 3267.794 kb on + strandat 3267.794 kb on + strandat 3267.795 kb on - strandat 3267.876 kb on + strandat 3267.877 kb on - strandat 3267.897 kb on + strandat 3267.897 kb on + strandat 3267.897 kb on + strandat 3267.926 kb on + strandat 3267.926 kb on + strandat 3267.926 kb on + strandat 3267.927 kb on - strandat 3267.927 kb on - strandat 3268.103 kb on + strand, within AO356_14370at 3268.103 kb on + strand, within AO356_14370at 3268.103 kb on + strand, within AO356_14370at 3268.104 kb on - strand, within AO356_14370at 3268.104 kb on - strand, within AO356_14370at 3268.110 kb on + strand, within AO356_14370at 3268.232 kb on + strand, within AO356_14370at 3268.232 kb on + strand, within AO356_14370at 3268.232 kb on + strand, within AO356_14370at 3268.232 kb on + strand, within AO356_14370at 3268.248 kb on - strand, within AO356_14370at 3268.270 kb on + strand, within AO356_14370at 3268.270 kb on + strand, within AO356_14370at 3268.278 kb on + strand, within AO356_14370at 3268.279 kb on - strand, within AO356_14370at 3268.304 kb on + strand, within AO356_14370at 3268.542 kb on + strand, within AO356_14370at 3268.542 kb on + strand, within AO356_14370at 3268.543 kb on - strand, within AO356_14370at 3268.663 kb on - strand, within AO356_14370at 3268.767 kb on + strand, within AO356_14370at 3268.768 kb on - strand, within AO356_14370at 3268.877 kb on - strandat 3268.939 kb on + strandat 3268.939 kb on + strandat 3268.940 kb on - strandat 3268.940 kb on - strandat 3268.953 kb on + strandat 3268.968 kb on + strandat 3268.969 kb on - strandat 3268.969 kb on - strandat 3268.969 kb on - strandat 3268.969 kb on - strandat 3268.969 kb on - strandat 3268.969 kb on - strandat 3269.157 kb on + strandat 3269.157 kb on + strandat 3269.157 kb on + strandat 3269.157 kb on + strandat 3269.166 kb on + strandat 3269.167 kb on - strandat 3269.167 kb on - strandat 3269.370 kb on + strand, within AO356_14375at 3269.370 kb on + strand, within AO356_14375at 3269.370 kb on + strand, within AO356_14375at 3269.370 kb on + strand, within AO356_14375at 3269.370 kb on + strand, within AO356_14375at 3269.371 kb on - strand, within AO356_14375at 3269.371 kb on - strand, within AO356_14375at 3269.487 kb on + strand, within AO356_14375at 3269.488 kb on - strand, within AO356_14375at 3269.488 kb on - strand, within AO356_14375at 3269.791 kb on - strand, within AO356_14375at 3269.791 kb on - strand, within AO356_14375

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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3,266,944 + -0.9
3,266,944 + +2.1
3,266,961 + -0.0
3,266,961 + +0.2
3,266,961 + +0.3
3,266,961 + +0.8
3,266,961 + -0.7
3,266,961 + +0.2
3,266,961 + +1.1
3,266,961 + +0.3
3,266,962 - +0.4
3,266,962 - -0.7
3,266,962 - -1.2
3,267,146 + AO356_14365 0.24 -0.0
3,267,146 + AO356_14365 0.24 +1.0
3,267,147 - AO356_14365 0.24 +0.5
3,267,307 + AO356_14365 0.45 -0.2
3,267,308 - AO356_14365 0.45 +0.6
3,267,308 - AO356_14365 0.45 -0.4
3,267,308 - AO356_14365 0.45 +1.0
3,267,478 + AO356_14365 0.67 +0.4
3,267,478 + AO356_14365 0.67 +1.8
3,267,479 - AO356_14365 0.67 +0.5
3,267,520 + AO356_14365 0.73 -0.5
3,267,521 - AO356_14365 0.73 +1.8
3,267,688 - +0.7
3,267,742 + +0.6
3,267,742 + +0.6
3,267,742 + -0.3
3,267,742 + -0.1
3,267,742 + +1.0
3,267,743 - +0.9
3,267,743 - -0.2
3,267,743 - -0.1
3,267,754 + -0.4
3,267,755 - +0.3
3,267,755 - +1.0
3,267,776 + +0.9
3,267,777 - -0.2
3,267,777 - +0.9
3,267,777 - +0.7
3,267,794 + +0.4
3,267,794 + +0.8
3,267,795 - -0.6
3,267,876 + +0.7
3,267,877 - -0.6
3,267,897 + +0.1
3,267,897 + +0.4
3,267,897 + +0.2
3,267,926 + +0.1
3,267,926 + +1.0
3,267,926 + +0.4
3,267,927 - +0.2
3,267,927 - +0.6
3,268,103 + AO356_14370 0.18 +0.3
3,268,103 + AO356_14370 0.18 +0.6
3,268,103 + AO356_14370 0.18 +0.2
3,268,104 - AO356_14370 0.18 +0.2
3,268,104 - AO356_14370 0.18 +0.4
3,268,110 + AO356_14370 0.19 +0.4
3,268,232 + AO356_14370 0.31 +0.3
3,268,232 + AO356_14370 0.31 -1.6
3,268,232 + AO356_14370 0.31 +0.8
3,268,232 + AO356_14370 0.31 -0.2
3,268,248 - AO356_14370 0.33 +0.1
3,268,270 + AO356_14370 0.35 +0.5
3,268,270 + AO356_14370 0.35 -0.3
3,268,278 + AO356_14370 0.36 +0.8
3,268,279 - AO356_14370 0.36 -0.6
3,268,304 + AO356_14370 0.38 +0.3
3,268,542 + AO356_14370 0.62 -0.6
3,268,542 + AO356_14370 0.62 -0.3
3,268,543 - AO356_14370 0.62 +1.0
3,268,663 - AO356_14370 0.74 -0.1
3,268,767 + AO356_14370 0.85 -0.3
3,268,768 - AO356_14370 0.85 +0.0
3,268,877 - -0.7
3,268,939 + +1.0
3,268,939 + -1.3
3,268,940 - +0.8
3,268,940 - +0.7
3,268,953 + +0.1
3,268,968 + +0.6
3,268,969 - +0.4
3,268,969 - +0.1
3,268,969 - -0.5
3,268,969 - +1.1
3,268,969 - -0.2
3,268,969 - -0.2
3,269,157 + +0.1
3,269,157 + +0.4
3,269,157 + +0.9
3,269,157 + -0.7
3,269,166 + +1.0
3,269,167 - +0.6
3,269,167 - +0.5
3,269,370 + AO356_14375 0.16 +1.4
3,269,370 + AO356_14375 0.16 -0.0
3,269,370 + AO356_14375 0.16 +1.0
3,269,370 + AO356_14375 0.16 +1.5
3,269,370 + AO356_14375 0.16 +0.3
3,269,371 - AO356_14375 0.16 +0.2
3,269,371 - AO356_14375 0.16 +0.6
3,269,487 + AO356_14375 0.21 +1.7
3,269,488 - AO356_14375 0.21 +0.9
3,269,488 - AO356_14375 0.21 -0.6
3,269,791 - AO356_14375 0.33 +0.7
3,269,791 - AO356_14375 0.33 -0.2

Or see this region's nucleotide sequence