Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08905

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08895 and AO356_08900 are separated by 8 nucleotidesAO356_08900 and AO356_08905 overlap by 1 nucleotidesAO356_08905 and AO356_08910 overlap by 17 nucleotides AO356_08895: AO356_08895 - GlcNAc-PI de-N-acetylase, at 2,004,876 to 2,006,276 _08895 AO356_08900: AO356_08900 - acetyltransferase, at 2,006,285 to 2,007,181 _08900 AO356_08905: AO356_08905 - glycosyl transferase, at 2,007,181 to 2,008,311 _08905 AO356_08910: AO356_08910 - carbamoyltransferase, at 2,008,295 to 2,010,052 _08910 Position (kb) 2007 2008 2009Strain fitness (log2 ratio) -2 -1 0 1 2at 2006.217 kb on + strandat 2006.218 kb on - strandat 2006.289 kb on - strandat 2006.289 kb on - strandat 2006.328 kb on + strandat 2006.844 kb on + strand, within AO356_08900at 2007.912 kb on - strand, within AO356_08905at 2008.008 kb on - strand, within AO356_08905at 2008.008 kb on - strand, within AO356_08905at 2008.008 kb on - strand, within AO356_08905at 2008.008 kb on - strand, within AO356_08905at 2008.119 kb on - strand, within AO356_08905at 2008.266 kb on - strandat 2008.312 kb on - strandat 2008.312 kb on - strandat 2008.360 kb on - strandat 2008.495 kb on - strand, within AO356_08910at 2008.495 kb on - strand, within AO356_08910at 2008.495 kb on - strand, within AO356_08910at 2008.498 kb on - strand, within AO356_08910at 2008.498 kb on - strand, within AO356_08910at 2008.510 kb on - strand, within AO356_08910at 2008.510 kb on - strand, within AO356_08910at 2008.939 kb on - strand, within AO356_08910at 2008.987 kb on - strand, within AO356_08910at 2008.987 kb on - strand, within AO356_08910at 2008.987 kb on - strand, within AO356_08910at 2009.149 kb on - strand, within AO356_08910

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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2,006,217 + -0.1
2,006,218 - -1.5
2,006,289 - +0.5
2,006,289 - +0.8
2,006,328 + +0.2
2,006,844 + AO356_08900 0.62 -1.5
2,007,912 - AO356_08905 0.65 -0.4
2,008,008 - AO356_08905 0.73 -1.0
2,008,008 - AO356_08905 0.73 -0.6
2,008,008 - AO356_08905 0.73 -0.6
2,008,008 - AO356_08905 0.73 -0.3
2,008,119 - AO356_08905 0.83 -1.5
2,008,266 - -2.0
2,008,312 - -0.2
2,008,312 - +0.5
2,008,360 - +1.6
2,008,495 - AO356_08910 0.11 -0.5
2,008,495 - AO356_08910 0.11 -0.1
2,008,495 - AO356_08910 0.11 +0.1
2,008,498 - AO356_08910 0.12 +0.5
2,008,498 - AO356_08910 0.12 +0.0
2,008,510 - AO356_08910 0.12 +0.8
2,008,510 - AO356_08910 0.12 +2.4
2,008,939 - AO356_08910 0.37 +2.5
2,008,987 - AO356_08910 0.39 -0.1
2,008,987 - AO356_08910 0.39 +0.8
2,008,987 - AO356_08910 0.39 +2.4
2,009,149 - AO356_08910 0.49 +2.1

Or see this region's nucleotide sequence