Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_03120

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_03115 and AO356_03120 are separated by 142 nucleotidesAO356_03120 and AO356_03125 are separated by 127 nucleotides AO356_03115: AO356_03115 - spermidine synthase, at 697,070 to 697,825 _03115 AO356_03120: AO356_03120 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 697,968 to 699,314 _03120 AO356_03125: AO356_03125 - cytoplasmic protein, at 699,442 to 700,671 _03125 Position (kb) 697 698 699 700Strain fitness (log2 ratio) -1 0 1 2at 696.974 kb on + strandat 696.975 kb on - strandat 696.975 kb on - strandat 696.975 kb on - strandat 696.975 kb on - strandat 697.047 kb on - strandat 697.114 kb on - strandat 697.233 kb on + strand, within AO356_03115at 697.245 kb on + strand, within AO356_03115at 697.245 kb on + strand, within AO356_03115at 697.246 kb on - strand, within AO356_03115at 697.246 kb on - strand, within AO356_03115at 697.395 kb on + strand, within AO356_03115at 697.395 kb on + strand, within AO356_03115at 697.395 kb on + strand, within AO356_03115at 697.467 kb on + strand, within AO356_03115at 697.467 kb on + strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.468 kb on - strand, within AO356_03115at 697.665 kb on + strand, within AO356_03115at 697.665 kb on + strand, within AO356_03115at 697.665 kb on + strand, within AO356_03115at 697.665 kb on + strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.666 kb on - strand, within AO356_03115at 697.671 kb on + strand, within AO356_03115at 697.672 kb on - strand, within AO356_03115at 697.672 kb on - strand, within AO356_03115at 697.672 kb on - strand, within AO356_03115at 697.760 kb on + strandat 697.760 kb on + strandat 697.915 kb on + strandat 697.915 kb on + strandat 697.916 kb on - strandat 697.916 kb on - strandat 697.918 kb on + strandat 697.918 kb on + strandat 697.918 kb on + strandat 697.918 kb on + strandat 697.918 kb on + strandat 697.919 kb on - strandat 697.919 kb on - strandat 697.919 kb on - strandat 697.919 kb on - strandat 697.929 kb on + strandat 697.930 kb on - strandat 697.930 kb on - strandat 697.949 kb on - strandat 697.949 kb on - strandat 697.949 kb on - strandat 697.957 kb on + strandat 697.957 kb on + strandat 697.958 kb on - strandat 697.958 kb on - strandat 698.439 kb on + strand, within AO356_03120at 698.562 kb on + strand, within AO356_03120at 698.563 kb on - strand, within AO356_03120at 698.563 kb on - strand, within AO356_03120at 698.685 kb on + strand, within AO356_03120at 698.685 kb on + strand, within AO356_03120at 698.685 kb on + strand, within AO356_03120at 698.686 kb on - strand, within AO356_03120at 698.727 kb on + strand, within AO356_03120at 698.728 kb on - strand, within AO356_03120at 698.728 kb on - strand, within AO356_03120at 698.728 kb on - strand, within AO356_03120at 698.730 kb on + strand, within AO356_03120at 698.730 kb on + strand, within AO356_03120at 698.730 kb on + strand, within AO356_03120at 698.730 kb on + strand, within AO356_03120at 698.731 kb on - strand, within AO356_03120at 698.731 kb on - strand, within AO356_03120at 699.052 kb on - strand, within AO356_03120at 699.126 kb on + strand, within AO356_03120at 699.127 kb on - strand, within AO356_03120at 699.127 kb on - strand, within AO356_03120at 699.127 kb on - strand, within AO356_03120at 699.312 kb on + strandat 699.331 kb on + strandat 699.432 kb on + strandat 699.691 kb on + strand, within AO356_03125at 699.691 kb on + strand, within AO356_03125at 699.691 kb on + strand, within AO356_03125at 699.691 kb on + strand, within AO356_03125at 699.692 kb on - strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.695 kb on + strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.696 kb on - strand, within AO356_03125at 699.698 kb on + strand, within AO356_03125at 699.698 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.704 kb on + strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.705 kb on - strand, within AO356_03125at 699.728 kb on + strand, within AO356_03125at 699.728 kb on + strand, within AO356_03125at 699.728 kb on + strand, within AO356_03125at 699.728 kb on + strand, within AO356_03125at 699.728 kb on + strand, within AO356_03125at 699.728 kb on + strand, within AO356_03125at 699.728 kb on + strand, within AO356_03125at 699.729 kb on - strand, within AO356_03125at 699.729 kb on - strand, within AO356_03125at 699.729 kb on - strand, within AO356_03125at 699.729 kb on - strand, within AO356_03125at 699.729 kb on - strand, within AO356_03125at 699.959 kb on + strand, within AO356_03125at 699.959 kb on + strand, within AO356_03125at 699.960 kb on - strand, within AO356_03125at 699.960 kb on - strand, within AO356_03125at 700.147 kb on + strand, within AO356_03125at 700.313 kb on + strand, within AO356_03125at 700.313 kb on + strand, within AO356_03125at 700.314 kb on - strand, within AO356_03125at 700.314 kb on - strand, within AO356_03125at 700.314 kb on - strand, within AO356_03125

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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696,974 + -0.1
696,975 - +0.1
696,975 - +0.7
696,975 - +0.3
696,975 - -0.3
697,047 - -0.5
697,114 - +0.2
697,233 + AO356_03115 0.22 +0.7
697,245 + AO356_03115 0.23 +1.1
697,245 + AO356_03115 0.23 +0.3
697,246 - AO356_03115 0.23 +0.6
697,246 - AO356_03115 0.23 +0.4
697,395 + AO356_03115 0.43 -0.6
697,395 + AO356_03115 0.43 -1.1
697,395 + AO356_03115 0.43 +0.8
697,467 + AO356_03115 0.53 +0.5
697,467 + AO356_03115 0.53 +0.4
697,468 - AO356_03115 0.53 +0.1
697,468 - AO356_03115 0.53 -0.1
697,468 - AO356_03115 0.53 +1.3
697,468 - AO356_03115 0.53 +0.9
697,468 - AO356_03115 0.53 +0.3
697,468 - AO356_03115 0.53 +0.1
697,468 - AO356_03115 0.53 +1.1
697,468 - AO356_03115 0.53 +0.5
697,468 - AO356_03115 0.53 +1.2
697,468 - AO356_03115 0.53 +1.0
697,468 - AO356_03115 0.53 +1.2
697,665 + AO356_03115 0.79 -0.1
697,665 + AO356_03115 0.79 +2.0
697,665 + AO356_03115 0.79 +0.4
697,665 + AO356_03115 0.79 +0.2
697,666 - AO356_03115 0.79 -0.4
697,666 - AO356_03115 0.79 +1.0
697,666 - AO356_03115 0.79 +0.1
697,666 - AO356_03115 0.79 -0.0
697,666 - AO356_03115 0.79 +0.8
697,666 - AO356_03115 0.79 +0.7
697,666 - AO356_03115 0.79 +1.1
697,666 - AO356_03115 0.79 +0.6
697,671 + AO356_03115 0.79 +0.0
697,672 - AO356_03115 0.80 +1.3
697,672 - AO356_03115 0.80 +1.6
697,672 - AO356_03115 0.80 +1.0
697,760 + -0.5
697,760 + -0.5
697,915 + +1.2
697,915 + +0.9
697,916 - +0.4
697,916 - +1.2
697,918 + +1.4
697,918 + -0.3
697,918 + +1.1
697,918 + -0.8
697,918 + +1.9
697,919 - +1.0
697,919 - +0.8
697,919 - -0.4
697,919 - +0.0
697,929 + +0.5
697,930 - -0.6
697,930 - -1.3
697,949 - -0.5
697,949 - +0.5
697,949 - -1.0
697,957 + -0.9
697,957 + +0.1
697,958 - -0.7
697,958 - +0.4
698,439 + AO356_03120 0.35 +0.4
698,562 + AO356_03120 0.44 -0.7
698,563 - AO356_03120 0.44 +0.8
698,563 - AO356_03120 0.44 -1.0
698,685 + AO356_03120 0.53 -0.8
698,685 + AO356_03120 0.53 +0.1
698,685 + AO356_03120 0.53 -0.6
698,686 - AO356_03120 0.53 +0.2
698,727 + AO356_03120 0.56 -0.2
698,728 - AO356_03120 0.56 -0.3
698,728 - AO356_03120 0.56 +0.4
698,728 - AO356_03120 0.56 -0.2
698,730 + AO356_03120 0.57 +0.2
698,730 + AO356_03120 0.57 +0.4
698,730 + AO356_03120 0.57 -0.0
698,730 + AO356_03120 0.57 +0.6
698,731 - AO356_03120 0.57 +0.6
698,731 - AO356_03120 0.57 -0.5
699,052 - AO356_03120 0.80 -0.1
699,126 + AO356_03120 0.86 +0.7
699,127 - AO356_03120 0.86 +0.1
699,127 - AO356_03120 0.86 +0.6
699,127 - AO356_03120 0.86 +0.1
699,312 + +0.2
699,331 + +0.3
699,432 + +1.3
699,691 + AO356_03125 0.20 -0.7
699,691 + AO356_03125 0.20 +1.1
699,691 + AO356_03125 0.20 -0.6
699,691 + AO356_03125 0.20 +2.4
699,692 - AO356_03125 0.20 +0.4
699,695 + AO356_03125 0.21 -0.0
699,695 + AO356_03125 0.21 -0.1
699,695 + AO356_03125 0.21 +1.2
699,695 + AO356_03125 0.21 +1.1
699,695 + AO356_03125 0.21 +0.3
699,695 + AO356_03125 0.21 -0.2
699,695 + AO356_03125 0.21 +1.0
699,695 + AO356_03125 0.21 +0.4
699,696 - AO356_03125 0.21 -0.1
699,696 - AO356_03125 0.21 +0.1
699,696 - AO356_03125 0.21 +1.3
699,696 - AO356_03125 0.21 +0.6
699,696 - AO356_03125 0.21 -0.8
699,696 - AO356_03125 0.21 +0.3
699,696 - AO356_03125 0.21 +0.5
699,696 - AO356_03125 0.21 +0.3
699,696 - AO356_03125 0.21 -0.1
699,696 - AO356_03125 0.21 -0.4
699,696 - AO356_03125 0.21 +0.6
699,698 + AO356_03125 0.21 +0.8
699,698 + AO356_03125 0.21 +0.2
699,704 + AO356_03125 0.21 +0.1
699,704 + AO356_03125 0.21 +0.4
699,704 + AO356_03125 0.21 +1.0
699,704 + AO356_03125 0.21 +0.5
699,704 + AO356_03125 0.21 +0.2
699,704 + AO356_03125 0.21 -0.1
699,704 + AO356_03125 0.21 +0.5
699,704 + AO356_03125 0.21 +0.2
699,704 + AO356_03125 0.21 +0.4
699,705 - AO356_03125 0.21 +0.4
699,705 - AO356_03125 0.21 +0.4
699,705 - AO356_03125 0.21 +0.4
699,705 - AO356_03125 0.21 +0.1
699,705 - AO356_03125 0.21 -0.5
699,705 - AO356_03125 0.21 +1.0
699,705 - AO356_03125 0.21 +0.7
699,705 - AO356_03125 0.21 -0.3
699,728 + AO356_03125 0.23 +0.5
699,728 + AO356_03125 0.23 -0.0
699,728 + AO356_03125 0.23 +0.1
699,728 + AO356_03125 0.23 -1.0
699,728 + AO356_03125 0.23 +0.9
699,728 + AO356_03125 0.23 +1.1
699,728 + AO356_03125 0.23 +1.1
699,729 - AO356_03125 0.23 -0.1
699,729 - AO356_03125 0.23 -0.4
699,729 - AO356_03125 0.23 +1.1
699,729 - AO356_03125 0.23 +0.4
699,729 - AO356_03125 0.23 +0.8
699,959 + AO356_03125 0.42 +0.4
699,959 + AO356_03125 0.42 +0.5
699,960 - AO356_03125 0.42 +0.4
699,960 - AO356_03125 0.42 -1.1
700,147 + AO356_03125 0.57 +0.6
700,313 + AO356_03125 0.71 +0.5
700,313 + AO356_03125 0.71 +0.5
700,314 - AO356_03125 0.71 -0.8
700,314 - AO356_03125 0.71 +0.7
700,314 - AO356_03125 0.71 +0.3

Or see this region's nucleotide sequence