Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02670

Experiment: L-Leucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_02660 and AO356_02665 are separated by 263 nucleotidesAO356_02665 and AO356_02670 are separated by 79 nucleotidesAO356_02670 and AO356_02675 are separated by 13 nucleotides AO356_02660: AO356_02660 - invasion protein regulator, at 584,223 to 585,482 _02660 AO356_02665: AO356_02665 - hypothetical protein, at 585,746 to 586,003 _02665 AO356_02670: AO356_02670 - hypothetical protein, at 586,083 to 587,189 _02670 AO356_02675: AO356_02675 - cell invasion protein, at 587,203 to 588,300 _02675 Position (kb) 586 587 588Strain fitness (log2 ratio) -2 -1 0 1at 585.151 kb on - strand, within AO356_02660at 585.212 kb on - strand, within AO356_02660at 585.247 kb on + strand, within AO356_02660at 585.248 kb on - strand, within AO356_02660at 585.248 kb on - strand, within AO356_02660at 585.248 kb on - strand, within AO356_02660at 585.251 kb on + strand, within AO356_02660at 585.252 kb on - strand, within AO356_02660at 585.252 kb on - strand, within AO356_02660at 585.252 kb on - strand, within AO356_02660at 585.357 kb on + strandat 585.358 kb on - strandat 585.482 kb on + strandat 585.482 kb on + strandat 585.483 kb on - strandat 585.498 kb on + strandat 585.568 kb on + strandat 585.569 kb on - strandat 585.608 kb on + strandat 585.666 kb on + strandat 585.673 kb on + strandat 585.715 kb on - strandat 585.736 kb on + strandat 585.737 kb on - strandat 585.754 kb on + strandat 585.761 kb on + strandat 585.762 kb on - strandat 585.762 kb on - strandat 585.763 kb on + strandat 585.763 kb on + strandat 585.764 kb on - strandat 585.764 kb on - strandat 585.764 kb on - strandat 585.764 kb on - strandat 585.785 kb on + strand, within AO356_02665at 585.785 kb on + strand, within AO356_02665at 585.786 kb on - strand, within AO356_02665at 585.847 kb on + strand, within AO356_02665at 585.848 kb on - strand, within AO356_02665at 585.851 kb on - strand, within AO356_02665at 585.851 kb on - strand, within AO356_02665at 585.851 kb on - strand, within AO356_02665at 585.851 kb on - strand, within AO356_02665at 585.947 kb on - strand, within AO356_02665at 585.980 kb on - strandat 586.063 kb on - strandat 586.084 kb on + strandat 586.109 kb on + strandat 586.145 kb on + strandat 586.162 kb on + strandat 586.276 kb on - strand, within AO356_02670at 586.276 kb on - strand, within AO356_02670at 586.289 kb on - strand, within AO356_02670at 586.486 kb on + strand, within AO356_02670at 586.534 kb on - strand, within AO356_02670at 586.624 kb on + strand, within AO356_02670at 586.646 kb on - strand, within AO356_02670at 586.719 kb on + strand, within AO356_02670at 586.719 kb on + strand, within AO356_02670at 587.154 kb on + strandat 587.154 kb on + strandat 587.155 kb on - strandat 587.159 kb on + strandat 587.171 kb on + strandat 587.171 kb on + strandat 587.172 kb on - strandat 587.172 kb on - strandat 587.189 kb on + strandat 587.189 kb on + strandat 587.636 kb on + strand, within AO356_02675at 587.636 kb on + strand, within AO356_02675at 587.636 kb on + strand, within AO356_02675at 587.637 kb on - strand, within AO356_02675at 587.716 kb on - strand, within AO356_02675

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
remove
585,151 - AO356_02660 0.74 -0.9
585,212 - AO356_02660 0.78 -0.9
585,247 + AO356_02660 0.81 -0.4
585,248 - AO356_02660 0.81 +0.9
585,248 - AO356_02660 0.81 +0.4
585,248 - AO356_02660 0.81 -1.1
585,251 + AO356_02660 0.82 +1.5
585,252 - AO356_02660 0.82 +0.7
585,252 - AO356_02660 0.82 +1.0
585,252 - AO356_02660 0.82 -0.4
585,357 + -0.4
585,358 - +0.5
585,482 + +0.6
585,482 + +1.2
585,483 - +0.3
585,498 + -1.1
585,568 + +0.0
585,569 - -1.4
585,608 + -0.4
585,666 + +0.5
585,673 + +1.0
585,715 - +0.5
585,736 + -0.4
585,737 - +0.1
585,754 + -2.4
585,761 + +0.7
585,762 - +0.2
585,762 - +1.0
585,763 + -0.5
585,763 + +0.1
585,764 - -0.2
585,764 - -0.4
585,764 - -0.5
585,764 - +1.7
585,785 + AO356_02665 0.15 +0.6
585,785 + AO356_02665 0.15 -0.5
585,786 - AO356_02665 0.16 +0.1
585,847 + AO356_02665 0.39 -0.4
585,848 - AO356_02665 0.40 +0.2
585,851 - AO356_02665 0.41 -0.1
585,851 - AO356_02665 0.41 +0.5
585,851 - AO356_02665 0.41 -0.1
585,851 - AO356_02665 0.41 -0.9
585,947 - AO356_02665 0.78 -0.1
585,980 - -0.2
586,063 - +0.3
586,084 + +0.6
586,109 + +1.5
586,145 + +0.1
586,162 + -0.1
586,276 - AO356_02670 0.17 -0.9
586,276 - AO356_02670 0.17 +0.8
586,289 - AO356_02670 0.19 +0.7
586,486 + AO356_02670 0.36 -0.7
586,534 - AO356_02670 0.41 +0.4
586,624 + AO356_02670 0.49 -0.0
586,646 - AO356_02670 0.51 +0.6
586,719 + AO356_02670 0.57 +0.5
586,719 + AO356_02670 0.57 +0.6
587,154 + -1.2
587,154 + +0.7
587,155 - +0.9
587,159 + +0.3
587,171 + +0.2
587,171 + +1.5
587,172 - +0.8
587,172 - +1.0
587,189 + +0.8
587,189 + -0.9
587,636 + AO356_02675 0.39 -1.3
587,636 + AO356_02675 0.39 -0.2
587,636 + AO356_02675 0.39 -1.8
587,637 - AO356_02675 0.40 +0.3
587,716 - AO356_02675 0.47 -0.0

Or see this region's nucleotide sequence