Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02345

Experiment: L-Leucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_02335 and AO356_02340 are separated by 101 nucleotidesAO356_02340 and AO356_02345 are separated by 174 nucleotidesAO356_02345 and AO356_02350 are separated by 214 nucleotides AO356_02335: AO356_02335 - hypothetical protein, at 506,257 to 506,694 _02335 AO356_02340: AO356_02340 - universal stress protein UspA, at 506,796 to 507,236 _02340 AO356_02345: AO356_02345 - ABC transporter ATP-binding protein, at 507,411 to 509,327 _02345 AO356_02350: AO356_02350 - lytic transglycosylase, at 509,542 to 511,470 _02350 Position (kb) 507 508 509 510Strain fitness (log2 ratio) -2 -1 0 1 2at 506.502 kb on - strand, within AO356_02335at 506.620 kb on + strand, within AO356_02335at 506.620 kb on + strand, within AO356_02335at 506.621 kb on - strand, within AO356_02335at 506.653 kb on + strandat 506.654 kb on - strandat 506.654 kb on - strandat 506.654 kb on - strandat 506.654 kb on - strandat 506.654 kb on - strandat 506.654 kb on - strandat 506.654 kb on - strandat 506.694 kb on + strandat 506.694 kb on + strandat 506.695 kb on - strandat 506.695 kb on - strandat 506.700 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.761 kb on + strandat 506.762 kb on - strandat 506.762 kb on - strandat 506.762 kb on - strandat 506.762 kb on - strandat 506.762 kb on - strandat 506.765 kb on + strandat 506.765 kb on + strandat 506.765 kb on + strandat 506.765 kb on + strandat 506.765 kb on + strandat 506.799 kb on + strandat 506.799 kb on + strandat 506.800 kb on - strandat 506.800 kb on - strandat 506.802 kb on + strandat 506.802 kb on + strandat 506.803 kb on - strandat 506.803 kb on - strandat 506.803 kb on - strandat 506.803 kb on - strandat 506.803 kb on - strandat 507.061 kb on - strand, within AO356_02340at 507.205 kb on + strandat 507.205 kb on + strandat 507.205 kb on + strandat 507.205 kb on + strandat 507.206 kb on - strandat 507.206 kb on - strandat 507.206 kb on - strandat 507.206 kb on - strandat 507.214 kb on + strandat 507.214 kb on + strandat 507.214 kb on + strandat 507.215 kb on - strandat 507.234 kb on + strandat 507.234 kb on + strandat 507.234 kb on + strandat 507.234 kb on + strandat 507.235 kb on - strandat 507.235 kb on - strandat 507.240 kb on + strandat 507.240 kb on + strandat 507.240 kb on + strandat 507.241 kb on - strandat 507.241 kb on - strandat 507.241 kb on - strandat 507.247 kb on - strandat 507.282 kb on - strandat 507.514 kb on + strandat 507.515 kb on - strandat 507.613 kb on + strand, within AO356_02345at 507.613 kb on + strand, within AO356_02345at 507.613 kb on + strand, within AO356_02345at 507.613 kb on + strand, within AO356_02345at 507.614 kb on - strand, within AO356_02345at 507.614 kb on - strand, within AO356_02345at 507.614 kb on - strand, within AO356_02345at 507.778 kb on + strand, within AO356_02345at 508.066 kb on + strand, within AO356_02345at 508.066 kb on + strand, within AO356_02345at 508.066 kb on + strand, within AO356_02345at 508.177 kb on + strand, within AO356_02345at 508.177 kb on + strand, within AO356_02345at 508.625 kb on - strand, within AO356_02345at 508.625 kb on - strand, within AO356_02345at 509.358 kb on - strandat 509.358 kb on - strandat 509.358 kb on - strandat 509.475 kb on + strandat 509.475 kb on + strandat 509.480 kb on + strandat 509.480 kb on + strandat 509.490 kb on + strandat 509.490 kb on + strandat 509.490 kb on + strandat 509.491 kb on - strandat 509.491 kb on - strandat 509.491 kb on - strandat 509.491 kb on - strandat 509.567 kb on + strandat 509.567 kb on + strandat 509.567 kb on + strandat 509.567 kb on + strandat 509.568 kb on - strandat 509.568 kb on - strandat 509.582 kb on + strandat 509.582 kb on + strandat 509.582 kb on + strandat 509.583 kb on - strandat 509.583 kb on - strandat 509.620 kb on - strandat 509.620 kb on - strandat 509.620 kb on - strandat 509.638 kb on + strandat 509.638 kb on + strandat 509.639 kb on - strandat 509.639 kb on - strandat 509.639 kb on - strandat 509.641 kb on + strandat 509.641 kb on + strandat 509.641 kb on + strandat 509.642 kb on - strandat 509.642 kb on - strandat 509.642 kb on - strandat 509.686 kb on + strandat 509.686 kb on + strandat 509.732 kb on - strandat 509.741 kb on - strand, within AO356_02350at 509.893 kb on + strand, within AO356_02350at 509.893 kb on + strand, within AO356_02350at 509.893 kb on + strand, within AO356_02350at 509.893 kb on + strand, within AO356_02350at 509.894 kb on - strand, within AO356_02350at 509.894 kb on - strand, within AO356_02350at 509.894 kb on - strand, within AO356_02350at 509.944 kb on + strand, within AO356_02350at 509.945 kb on - strand, within AO356_02350at 509.977 kb on + strand, within AO356_02350at 509.977 kb on + strand, within AO356_02350at 510.121 kb on + strand, within AO356_02350at 510.122 kb on - strand, within AO356_02350at 510.122 kb on - strand, within AO356_02350

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
remove
506,502 - AO356_02335 0.56 +1.0
506,620 + AO356_02335 0.83 -1.8
506,620 + AO356_02335 0.83 +1.9
506,621 - AO356_02335 0.83 -0.3
506,653 + -2.0
506,654 - +0.8
506,654 - -0.6
506,654 - -2.4
506,654 - +1.7
506,654 - +0.3
506,654 - -0.5
506,654 - -0.3
506,694 + +0.8
506,694 + +0.2
506,695 - -2.4
506,695 - -0.4
506,700 + -0.4
506,761 + +0.6
506,761 + +0.5
506,761 + -0.1
506,761 + +2.1
506,761 + -0.6
506,761 + +0.9
506,761 + -0.2
506,761 + +0.6
506,761 + +0.6
506,762 - +0.4
506,762 - -1.4
506,762 - -1.8
506,762 - -0.2
506,762 - -1.3
506,765 + +0.7
506,765 + +0.2
506,765 + +0.3
506,765 + +0.6
506,765 + +0.9
506,799 + -2.4
506,799 + -2.0
506,800 - -0.8
506,800 - -0.2
506,802 + -2.3
506,802 + -0.3
506,803 - -1.6
506,803 - -1.3
506,803 - -0.8
506,803 - -2.3
506,803 - -1.1
507,061 - AO356_02340 0.60 -1.9
507,205 + -1.8
507,205 + -1.4
507,205 + -0.1
507,205 + -1.4
507,206 - -0.5
507,206 - -0.4
507,206 - -2.0
507,206 - -0.9
507,214 + -1.8
507,214 + -2.4
507,214 + -0.0
507,215 - -0.4
507,234 + +0.1
507,234 + -0.0
507,234 + -0.3
507,234 + -0.2
507,235 - +1.1
507,235 - +0.4
507,240 + -1.2
507,240 + +0.9
507,240 + -0.2
507,241 - +0.9
507,241 - +0.6
507,241 - -1.5
507,247 - -0.2
507,282 - +0.0
507,514 + -0.3
507,515 - -0.5
507,613 + AO356_02345 0.11 -1.2
507,613 + AO356_02345 0.11 -0.1
507,613 + AO356_02345 0.11 +0.5
507,613 + AO356_02345 0.11 -0.0
507,614 - AO356_02345 0.11 +0.5
507,614 - AO356_02345 0.11 +0.7
507,614 - AO356_02345 0.11 +0.2
507,778 + AO356_02345 0.19 -0.1
508,066 + AO356_02345 0.34 +1.7
508,066 + AO356_02345 0.34 +0.2
508,066 + AO356_02345 0.34 -0.5
508,177 + AO356_02345 0.40 +1.5
508,177 + AO356_02345 0.40 -0.2
508,625 - AO356_02345 0.63 +1.0
508,625 - AO356_02345 0.63 -0.3
509,358 - +0.6
509,358 - -0.5
509,358 - +0.1
509,475 + -0.0
509,475 + +0.5
509,480 + +0.5
509,480 + +0.7
509,490 + +0.5
509,490 + +0.6
509,490 + +1.1
509,491 - -0.9
509,491 - -0.2
509,491 - +0.2
509,491 - -0.3
509,567 + +0.2
509,567 + -0.4
509,567 + +0.7
509,567 + +0.9
509,568 - +0.2
509,568 - -1.3
509,582 + +0.2
509,582 + -0.1
509,582 + +0.2
509,583 - +0.8
509,583 - -0.7
509,620 - +0.2
509,620 - +0.1
509,620 - -0.5
509,638 + -0.6
509,638 + -0.2
509,639 - -0.1
509,639 - -0.5
509,639 - -0.2
509,641 + -0.7
509,641 + +0.7
509,641 + +0.2
509,642 - +0.8
509,642 - -0.2
509,642 - -0.3
509,686 + -0.3
509,686 + -0.8
509,732 - -1.3
509,741 - AO356_02350 0.10 +0.2
509,893 + AO356_02350 0.18 +0.3
509,893 + AO356_02350 0.18 +0.7
509,893 + AO356_02350 0.18 +0.5
509,893 + AO356_02350 0.18 -0.0
509,894 - AO356_02350 0.18 -1.7
509,894 - AO356_02350 0.18 +1.4
509,894 - AO356_02350 0.18 +0.8
509,944 + AO356_02350 0.21 -1.7
509,945 - AO356_02350 0.21 +0.1
509,977 + AO356_02350 0.23 -1.0
509,977 + AO356_02350 0.23 +0.1
510,121 + AO356_02350 0.30 -0.7
510,122 - AO356_02350 0.30 +0.4
510,122 - AO356_02350 0.30 +0.5

Or see this region's nucleotide sequence