Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01595

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01585 and AO356_01590 are separated by 13 nucleotidesAO356_01590 and AO356_01595 overlap by 4 nucleotidesAO356_01595 and AO356_01600 are separated by 29 nucleotidesAO356_01600 and AO356_01605 are separated by 130 nucleotides AO356_01585: AO356_01585 - 3-methylcrotonyl-CoA carboxylase, beta subunit (EC 6.4.1.4) (from data), at 357,745 to 359,352 _01585 AO356_01590: AO356_01590 - Methylglutaconyl-CoA hydratase (EC 4.2.1.18) (from data), at 359,366 to 360,187 _01590 AO356_01595: AO356_01595 - 3-methylcrotonyl-CoA carboxylase, alpha (biotin-containing) subunit (EC 6.4.1.4) (from data), at 360,184 to 362,133 _01595 AO356_01600: AO356_01600 - Cro/Cl family transcriptional regulator, at 362,163 to 362,810 _01600 AO356_01605: AO356_01605 - hypothetical protein, at 362,941 to 363,282 _01605 Position (kb) 360 361 362 363Strain fitness (log2 ratio) -2 -1 0 1at 359.197 kb on + strandat 359.197 kb on + strandat 359.197 kb on + strandat 359.219 kb on - strandat 359.219 kb on - strandat 359.221 kb on + strandat 359.221 kb on + strandat 359.221 kb on + strandat 359.222 kb on - strandat 359.222 kb on - strandat 359.279 kb on + strandat 359.280 kb on - strandat 359.280 kb on - strandat 359.351 kb on - strandat 359.351 kb on - strandat 359.351 kb on - strandat 359.513 kb on - strand, within AO356_01590at 359.603 kb on + strand, within AO356_01590at 359.648 kb on + strand, within AO356_01590at 359.648 kb on + strand, within AO356_01590at 359.648 kb on + strand, within AO356_01590at 359.648 kb on + strand, within AO356_01590at 359.648 kb on + strand, within AO356_01590at 359.648 kb on + strand, within AO356_01590at 359.648 kb on + strand, within AO356_01590at 359.649 kb on - strand, within AO356_01590at 359.649 kb on - strand, within AO356_01590at 359.722 kb on + strand, within AO356_01590at 359.722 kb on + strand, within AO356_01590at 359.723 kb on - strand, within AO356_01590at 359.974 kb on - strand, within AO356_01590at 359.974 kb on - strand, within AO356_01590at 360.060 kb on - strand, within AO356_01590at 360.164 kb on - strandat 360.287 kb on + strandat 360.373 kb on + strandat 360.373 kb on + strandat 360.374 kb on - strandat 360.374 kb on - strandat 360.799 kb on + strand, within AO356_01595at 360.862 kb on + strand, within AO356_01595at 360.997 kb on + strand, within AO356_01595at 360.997 kb on + strand, within AO356_01595at 360.998 kb on - strand, within AO356_01595at 361.213 kb on + strand, within AO356_01595at 361.213 kb on + strand, within AO356_01595at 361.213 kb on + strand, within AO356_01595at 361.214 kb on - strand, within AO356_01595at 361.214 kb on - strand, within AO356_01595at 361.214 kb on - strand, within AO356_01595at 361.214 kb on - strand, within AO356_01595at 361.267 kb on + strand, within AO356_01595at 361.343 kb on - strand, within AO356_01595at 361.518 kb on + strand, within AO356_01595at 361.519 kb on - strand, within AO356_01595at 361.519 kb on - strand, within AO356_01595at 361.541 kb on + strand, within AO356_01595at 361.541 kb on + strand, within AO356_01595at 361.622 kb on + strand, within AO356_01595at 361.622 kb on + strand, within AO356_01595at 361.841 kb on - strand, within AO356_01595at 361.841 kb on - strand, within AO356_01595at 361.879 kb on + strand, within AO356_01595at 361.879 kb on + strand, within AO356_01595at 362.009 kb on + strandat 362.075 kb on - strandat 362.131 kb on + strandat 362.190 kb on + strandat 362.190 kb on + strandat 362.190 kb on + strandat 362.191 kb on - strandat 362.191 kb on - strandat 362.191 kb on - strandat 362.218 kb on + strandat 362.257 kb on + strand, within AO356_01600at 362.258 kb on - strand, within AO356_01600at 362.458 kb on + strand, within AO356_01600at 362.458 kb on + strand, within AO356_01600at 362.458 kb on + strand, within AO356_01600at 362.459 kb on - strand, within AO356_01600at 362.488 kb on + strand, within AO356_01600at 362.554 kb on + strand, within AO356_01600at 362.563 kb on + strand, within AO356_01600at 362.563 kb on + strand, within AO356_01600at 362.564 kb on - strand, within AO356_01600at 362.796 kb on + strandat 362.797 kb on - strandat 362.804 kb on + strandat 362.805 kb on - strandat 362.822 kb on + strandat 362.822 kb on + strandat 362.822 kb on + strandat 362.822 kb on + strandat 362.822 kb on + strandat 362.823 kb on - strandat 362.823 kb on - strandat 362.823 kb on - strandat 362.823 kb on - strandat 362.823 kb on - strandat 362.890 kb on + strandat 362.956 kb on - strandat 362.956 kb on - strandat 363.034 kb on + strand, within AO356_01605at 363.035 kb on - strand, within AO356_01605at 363.035 kb on - strand, within AO356_01605at 363.037 kb on + strand, within AO356_01605at 363.037 kb on + strand, within AO356_01605at 363.037 kb on + strand, within AO356_01605at 363.038 kb on - strand, within AO356_01605at 363.038 kb on - strand, within AO356_01605at 363.038 kb on - strand, within AO356_01605

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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359,197 + -0.1
359,197 + +0.6
359,197 + -0.2
359,219 - -0.6
359,219 - +0.5
359,221 + +0.2
359,221 + -1.5
359,221 + -0.2
359,222 - -0.7
359,222 - -0.1
359,279 + -1.6
359,280 - -1.5
359,280 - -1.3
359,351 - -1.0
359,351 - -0.5
359,351 - -1.9
359,513 - AO356_01590 0.18 -0.0
359,603 + AO356_01590 0.29 -1.1
359,648 + AO356_01590 0.34 -1.0
359,648 + AO356_01590 0.34 -0.5
359,648 + AO356_01590 0.34 -0.1
359,648 + AO356_01590 0.34 -2.3
359,648 + AO356_01590 0.34 -1.2
359,648 + AO356_01590 0.34 -1.5
359,648 + AO356_01590 0.34 -1.9
359,649 - AO356_01590 0.34 -0.3
359,649 - AO356_01590 0.34 -1.3
359,722 + AO356_01590 0.43 +0.8
359,722 + AO356_01590 0.43 -2.2
359,723 - AO356_01590 0.43 +0.2
359,974 - AO356_01590 0.74 +1.4
359,974 - AO356_01590 0.74 -1.0
360,060 - AO356_01590 0.84 +0.1
360,164 - -0.5
360,287 + -1.9
360,373 + -0.6
360,373 + -1.2
360,374 - -1.7
360,374 - -1.3
360,799 + AO356_01595 0.32 +0.1
360,862 + AO356_01595 0.35 +0.5
360,997 + AO356_01595 0.42 -0.8
360,997 + AO356_01595 0.42 -0.7
360,998 - AO356_01595 0.42 -0.7
361,213 + AO356_01595 0.53 -0.2
361,213 + AO356_01595 0.53 +0.0
361,213 + AO356_01595 0.53 -1.1
361,214 - AO356_01595 0.53 -1.1
361,214 - AO356_01595 0.53 -1.0
361,214 - AO356_01595 0.53 -0.5
361,214 - AO356_01595 0.53 -0.8
361,267 + AO356_01595 0.56 -1.0
361,343 - AO356_01595 0.59 +0.5
361,518 + AO356_01595 0.68 -0.8
361,519 - AO356_01595 0.68 +0.0
361,519 - AO356_01595 0.68 -1.8
361,541 + AO356_01595 0.70 -1.0
361,541 + AO356_01595 0.70 -0.8
361,622 + AO356_01595 0.74 +0.3
361,622 + AO356_01595 0.74 -0.8
361,841 - AO356_01595 0.85 -2.1
361,841 - AO356_01595 0.85 -1.4
361,879 + AO356_01595 0.87 +1.4
361,879 + AO356_01595 0.87 -1.5
362,009 + -1.3
362,075 - -0.6
362,131 + +0.0
362,190 + -0.9
362,190 + +0.2
362,190 + +0.8
362,191 - +0.4
362,191 - -0.3
362,191 - -0.3
362,218 + -0.1
362,257 + AO356_01600 0.15 -0.0
362,258 - AO356_01600 0.15 +0.0
362,458 + AO356_01600 0.46 +0.6
362,458 + AO356_01600 0.46 -0.3
362,458 + AO356_01600 0.46 +0.9
362,459 - AO356_01600 0.46 +0.4
362,488 + AO356_01600 0.50 -0.1
362,554 + AO356_01600 0.60 +0.7
362,563 + AO356_01600 0.62 +0.1
362,563 + AO356_01600 0.62 +0.1
362,564 - AO356_01600 0.62 +0.2
362,796 + +0.8
362,797 - +0.2
362,804 + +1.0
362,805 - +0.7
362,822 + +0.5
362,822 + -0.1
362,822 + +0.9
362,822 + +0.8
362,822 + +0.5
362,823 - +0.8
362,823 - +0.3
362,823 - +0.0
362,823 - +0.2
362,823 - +0.5
362,890 + -1.2
362,956 - -0.2
362,956 - +0.3
363,034 + AO356_01605 0.27 +0.6
363,035 - AO356_01605 0.27 +0.0
363,035 - AO356_01605 0.27 +0.5
363,037 + AO356_01605 0.28 -0.3
363,037 + AO356_01605 0.28 +0.0
363,037 + AO356_01605 0.28 -0.1
363,038 - AO356_01605 0.28 +0.4
363,038 - AO356_01605 0.28 +0.6
363,038 - AO356_01605 0.28 +0.1

Or see this region's nucleotide sequence