Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01260

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01255 and AO356_01260 are separated by 502 nucleotidesAO356_01260 and AO356_01265 are separated by 135 nucleotidesAO356_01265 and AO356_01270 are separated by 299 nucleotides AO356_01255: AO356_01255 - alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase, at 291,606 to 293,603 _01255 AO356_01260: AO356_01260 - methyltransferase, at 294,106 to 294,612 _01260 AO356_01265: AO356_01265 - hypothetical protein, at 294,748 to 294,984 _01265 AO356_01270: AO356_01270 - (Fe-S)-binding protein, at 295,284 to 296,696 _01270 Position (kb) 294 295Strain fitness (log2 ratio) -3 -2 -1 0 1at 293.296 kb on + strand, within AO356_01255at 293.296 kb on + strand, within AO356_01255at 293.297 kb on - strand, within AO356_01255at 293.297 kb on - strand, within AO356_01255at 293.297 kb on - strand, within AO356_01255at 293.442 kb on - strandat 293.572 kb on + strandat 293.572 kb on + strandat 293.572 kb on + strandat 293.572 kb on + strandat 293.573 kb on - strandat 293.573 kb on - strandat 293.573 kb on - strandat 293.621 kb on - strandat 293.680 kb on + strandat 293.681 kb on - strandat 293.733 kb on + strandat 293.733 kb on + strandat 293.772 kb on + strandat 293.772 kb on + strandat 293.772 kb on + strandat 293.773 kb on - strandat 293.773 kb on - strandat 293.773 kb on - strandat 293.773 kb on - strandat 293.819 kb on + strandat 293.819 kb on + strandat 293.820 kb on - strandat 293.820 kb on - strandat 294.035 kb on + strandat 294.035 kb on + strandat 294.036 kb on - strandat 294.036 kb on - strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.101 kb on + strandat 294.102 kb on - strandat 294.102 kb on - strandat 294.102 kb on - strandat 294.102 kb on - strandat 294.102 kb on - strandat 294.157 kb on + strand, within AO356_01260at 294.158 kb on - strand, within AO356_01260at 294.158 kb on - strand, within AO356_01260at 294.158 kb on - strand, within AO356_01260at 294.187 kb on - strand, within AO356_01260at 294.187 kb on - strand, within AO356_01260at 294.187 kb on - strand, within AO356_01260at 294.187 kb on - strand, within AO356_01260at 294.187 kb on - strand, within AO356_01260at 294.187 kb on - strand, within AO356_01260at 294.187 kb on - strand, within AO356_01260at 294.355 kb on + strand, within AO356_01260at 294.355 kb on + strand, within AO356_01260at 294.355 kb on + strand, within AO356_01260at 294.356 kb on - strand, within AO356_01260at 294.356 kb on - strand, within AO356_01260at 294.356 kb on - strand, within AO356_01260at 294.406 kb on + strand, within AO356_01260at 294.637 kb on - strandat 294.718 kb on - strandat 294.718 kb on - strandat 294.889 kb on + strand, within AO356_01265at 294.889 kb on + strand, within AO356_01265at 294.889 kb on + strand, within AO356_01265at 294.889 kb on + strand, within AO356_01265at 294.890 kb on - strand, within AO356_01265at 294.890 kb on - strand, within AO356_01265at 294.890 kb on - strand, within AO356_01265at 294.890 kb on - strand, within AO356_01265at 294.892 kb on - strand, within AO356_01265at 295.016 kb on - strandat 295.016 kb on - strandat 295.016 kb on - strandat 295.108 kb on + strandat 295.108 kb on + strandat 295.245 kb on + strandat 295.262 kb on - strandat 295.262 kb on - strandat 295.262 kb on - strandat 295.292 kb on + strandat 295.292 kb on + strandat 295.293 kb on - strandat 295.293 kb on - strandat 295.293 kb on - strandat 295.293 kb on - strandat 295.293 kb on - strandat 295.312 kb on + strandat 295.312 kb on + strandat 295.312 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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293,296 + AO356_01255 0.85 -0.3
293,296 + AO356_01255 0.85 +0.7
293,297 - AO356_01255 0.85 -1.3
293,297 - AO356_01255 0.85 -0.7
293,297 - AO356_01255 0.85 -3.3
293,442 - -0.5
293,572 + -0.3
293,572 + -2.0
293,572 + -0.3
293,572 + +0.1
293,573 - -2.3
293,573 - -0.3
293,573 - +0.1
293,621 - -0.4
293,680 + -0.0
293,681 - -0.3
293,733 + +0.3
293,733 + -0.2
293,772 + +1.2
293,772 + -1.2
293,772 + +0.2
293,773 - -0.4
293,773 - +0.6
293,773 - +0.3
293,773 - -0.3
293,819 + -0.4
293,819 + +0.5
293,820 - +0.5
293,820 - +0.6
294,035 + +1.1
294,035 + -0.0
294,036 - +1.1
294,036 - +1.0
294,101 + -0.7
294,101 + -0.1
294,101 + +0.2
294,101 + -0.5
294,101 + -2.1
294,101 + -0.3
294,101 + -0.2
294,101 + +0.6
294,101 + +0.3
294,102 - -1.2
294,102 - +0.6
294,102 - -0.8
294,102 - +0.3
294,102 - +0.0
294,157 + AO356_01260 0.10 +0.6
294,158 - AO356_01260 0.10 +0.1
294,158 - AO356_01260 0.10 +0.3
294,158 - AO356_01260 0.10 -0.8
294,187 - AO356_01260 0.16 -1.0
294,187 - AO356_01260 0.16 +0.2
294,187 - AO356_01260 0.16 -0.0
294,187 - AO356_01260 0.16 +0.5
294,187 - AO356_01260 0.16 -0.4
294,187 - AO356_01260 0.16 +0.0
294,187 - AO356_01260 0.16 +0.5
294,355 + AO356_01260 0.49 +0.3
294,355 + AO356_01260 0.49 -0.8
294,355 + AO356_01260 0.49 -0.8
294,356 - AO356_01260 0.49 +0.5
294,356 - AO356_01260 0.49 +0.5
294,356 - AO356_01260 0.49 +1.0
294,406 + AO356_01260 0.59 -0.8
294,637 - +0.6
294,718 - +0.6
294,718 - +0.3
294,889 + AO356_01265 0.59 +0.4
294,889 + AO356_01265 0.59 +0.5
294,889 + AO356_01265 0.59 +0.9
294,889 + AO356_01265 0.59 +0.4
294,890 - AO356_01265 0.60 +0.5
294,890 - AO356_01265 0.60 +1.1
294,890 - AO356_01265 0.60 +0.3
294,890 - AO356_01265 0.60 +1.0
294,892 - AO356_01265 0.61 -0.2
295,016 - +1.5
295,016 - +1.1
295,016 - +0.7
295,108 + -0.5
295,108 + +0.3
295,245 + -0.8
295,262 - -0.5
295,262 - +0.7
295,262 - +1.2
295,292 + +0.7
295,292 + -0.6
295,293 - +1.3
295,293 - -1.0
295,293 - +0.2
295,293 - +1.3
295,293 - -0.5
295,312 + -0.5
295,312 + +0.7
295,312 + -1.0

Or see this region's nucleotide sequence