Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00605

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00595 and AO356_00600 are separated by 88 nucleotidesAO356_00600 and AO356_00605 overlap by 11 nucleotidesAO356_00605 and AO356_00610 are separated by 594 nucleotides AO356_00595: AO356_00595 - hypothetical protein, at 128,100 to 128,621 _00595 AO356_00600: AO356_00600 - pyrroline-5-carboxylate reductase, at 128,710 to 129,495 _00600 AO356_00605: AO356_00605 - TetR family transcriptional regulator, at 129,485 to 130,189 _00605 AO356_00610: AO356_00610 - choline ABC transporter permease subunit, at 130,784 to 131,632 _00610 Position (kb) 129 130 131Strain fitness (log2 ratio) -2 -1 0 1at 128.619 kb on + strandat 128.620 kb on - strandat 128.625 kb on + strandat 128.635 kb on - strandat 128.708 kb on + strandat 128.770 kb on + strandat 128.929 kb on + strand, within AO356_00600at 128.930 kb on - strand, within AO356_00600at 128.930 kb on - strand, within AO356_00600at 129.015 kb on - strand, within AO356_00600at 129.109 kb on - strand, within AO356_00600at 129.116 kb on + strand, within AO356_00600at 129.117 kb on - strand, within AO356_00600at 129.126 kb on + strand, within AO356_00600at 129.244 kb on - strand, within AO356_00600at 129.625 kb on - strand, within AO356_00605at 129.625 kb on - strand, within AO356_00605at 129.625 kb on - strand, within AO356_00605at 129.681 kb on + strand, within AO356_00605at 129.682 kb on - strand, within AO356_00605at 129.700 kb on - strand, within AO356_00605at 129.739 kb on - strand, within AO356_00605at 130.024 kb on - strand, within AO356_00605at 130.107 kb on + strand, within AO356_00605at 130.108 kb on - strand, within AO356_00605at 130.179 kb on - strandat 130.210 kb on + strandat 130.210 kb on + strandat 130.289 kb on - strandat 130.289 kb on - strandat 130.289 kb on - strandat 130.289 kb on - strandat 130.381 kb on + strandat 130.381 kb on + strandat 130.382 kb on - strandat 130.382 kb on - strandat 130.382 kb on - strandat 130.540 kb on - strandat 130.601 kb on + strandat 130.602 kb on - strandat 130.650 kb on + strandat 130.665 kb on - strandat 130.783 kb on + strandat 130.784 kb on - strandat 130.793 kb on - strandat 130.866 kb on + strandat 130.876 kb on + strand, within AO356_00610at 130.876 kb on + strand, within AO356_00610at 130.876 kb on + strand, within AO356_00610at 130.877 kb on - strand, within AO356_00610at 130.877 kb on - strand, within AO356_00610at 130.878 kb on + strand, within AO356_00610at 130.879 kb on - strand, within AO356_00610at 130.956 kb on + strand, within AO356_00610at 130.957 kb on - strand, within AO356_00610at 130.974 kb on - strand, within AO356_00610at 130.974 kb on - strand, within AO356_00610at 130.976 kb on + strand, within AO356_00610at 130.976 kb on + strand, within AO356_00610at 130.976 kb on + strand, within AO356_00610at 130.976 kb on + strand, within AO356_00610at 130.977 kb on - strand, within AO356_00610at 130.977 kb on - strand, within AO356_00610at 130.977 kb on - strand, within AO356_00610at 130.977 kb on - strand, within AO356_00610at 130.977 kb on - strand, within AO356_00610at 131.031 kb on + strand, within AO356_00610at 131.154 kb on - strand, within AO356_00610at 131.154 kb on - strand, within AO356_00610

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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128,619 + +0.2
128,620 - +0.0
128,625 + -0.4
128,635 - +0.5
128,708 + -0.6
128,770 + +0.1
128,929 + AO356_00600 0.28 -0.9
128,930 - AO356_00600 0.28 -0.3
128,930 - AO356_00600 0.28 +1.2
129,015 - AO356_00600 0.39 +0.2
129,109 - AO356_00600 0.51 +0.4
129,116 + AO356_00600 0.52 -1.0
129,117 - AO356_00600 0.52 -0.0
129,126 + AO356_00600 0.53 +0.0
129,244 - AO356_00600 0.68 +1.2
129,625 - AO356_00605 0.20 -0.7
129,625 - AO356_00605 0.20 -1.9
129,625 - AO356_00605 0.20 -1.4
129,681 + AO356_00605 0.28 +0.1
129,682 - AO356_00605 0.28 -0.8
129,700 - AO356_00605 0.30 -0.4
129,739 - AO356_00605 0.36 -1.2
130,024 - AO356_00605 0.76 -0.8
130,107 + AO356_00605 0.88 -0.4
130,108 - AO356_00605 0.88 -0.2
130,179 - -1.8
130,210 + -0.5
130,210 + +0.1
130,289 - +1.0
130,289 - -0.0
130,289 - +0.7
130,289 - -0.2
130,381 + -0.7
130,381 + +0.6
130,382 - +1.2
130,382 - +0.3
130,382 - +0.4
130,540 - -0.0
130,601 + -1.5
130,602 - +1.0
130,650 + +1.3
130,665 - -0.1
130,783 + +0.1
130,784 - -1.0
130,793 - -0.0
130,866 + +0.7
130,876 + AO356_00610 0.11 -0.3
130,876 + AO356_00610 0.11 -0.2
130,876 + AO356_00610 0.11 +0.1
130,877 - AO356_00610 0.11 -0.7
130,877 - AO356_00610 0.11 +0.5
130,878 + AO356_00610 0.11 +0.8
130,879 - AO356_00610 0.11 +0.2
130,956 + AO356_00610 0.20 -1.0
130,957 - AO356_00610 0.20 +0.3
130,974 - AO356_00610 0.22 +0.8
130,974 - AO356_00610 0.22 +0.1
130,976 + AO356_00610 0.23 +0.2
130,976 + AO356_00610 0.23 +0.2
130,976 + AO356_00610 0.23 +0.8
130,976 + AO356_00610 0.23 +0.9
130,977 - AO356_00610 0.23 +0.3
130,977 - AO356_00610 0.23 +1.0
130,977 - AO356_00610 0.23 +0.4
130,977 - AO356_00610 0.23 -1.4
130,977 - AO356_00610 0.23 -0.1
131,031 + AO356_00610 0.29 +1.2
131,154 - AO356_00610 0.44 +0.4
131,154 - AO356_00610 0.44 -0.5

Or see this region's nucleotide sequence