Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00455

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00450 and AO356_00455 are separated by 41 nucleotidesAO356_00455 and AO356_00460 are separated by 214 nucleotidesAO356_00460 and AO356_00465 are separated by 25 nucleotides AO356_00450: AO356_00450 - D-glucosaminate dehydratase (EC 4.3.1.9) (from data), at 93,985 to 95,202 _00450 AO356_00455: AO356_00455 - IclR family transcriptional regulator, at 95,244 to 96,008 _00455 AO356_00460: AO356_00460 - reactive intermediate/imine deaminase, at 96,223 to 96,612 _00460 AO356_00465: AO356_00465 - ABC transporter for D-Glucosamine, putative ATPase component (from data), at 96,638 to 97,429 _00465 Position (kb) 95 96 97Strain fitness (log2 ratio) -2 -1 0 1at 94.248 kb on - strand, within AO356_00450at 94.391 kb on + strand, within AO356_00450at 94.392 kb on - strand, within AO356_00450at 94.416 kb on - strand, within AO356_00450at 94.416 kb on - strand, within AO356_00450at 94.416 kb on - strand, within AO356_00450at 94.490 kb on + strand, within AO356_00450at 94.635 kb on - strand, within AO356_00450at 94.742 kb on + strand, within AO356_00450at 94.742 kb on + strand, within AO356_00450at 95.173 kb on + strandat 95.208 kb on + strandat 95.209 kb on - strandat 95.209 kb on - strandat 95.241 kb on + strandat 95.241 kb on + strandat 95.242 kb on - strandat 95.242 kb on - strandat 95.245 kb on + strandat 95.245 kb on + strandat 95.245 kb on + strandat 95.246 kb on - strandat 95.308 kb on + strandat 95.309 kb on - strandat 95.662 kb on + strand, within AO356_00455at 95.663 kb on - strand, within AO356_00455at 95.663 kb on - strand, within AO356_00455at 95.785 kb on + strand, within AO356_00455at 95.786 kb on - strand, within AO356_00455at 95.869 kb on + strand, within AO356_00455at 95.869 kb on + strand, within AO356_00455at 95.869 kb on + strand, within AO356_00455at 95.869 kb on + strand, within AO356_00455at 95.869 kb on + strand, within AO356_00455at 95.869 kb on + strand, within AO356_00455at 95.870 kb on - strand, within AO356_00455at 96.033 kb on + strandat 96.033 kb on + strandat 96.034 kb on - strandat 96.034 kb on - strandat 96.120 kb on - strandat 96.167 kb on + strandat 96.167 kb on + strandat 96.239 kb on + strandat 96.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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94,248 - AO356_00450 0.22 +0.6
94,391 + AO356_00450 0.33 +0.5
94,392 - AO356_00450 0.33 +0.6
94,416 - AO356_00450 0.35 +1.3
94,416 - AO356_00450 0.35 +0.6
94,416 - AO356_00450 0.35 +0.3
94,490 + AO356_00450 0.41 +1.2
94,635 - AO356_00450 0.53 -1.1
94,742 + AO356_00450 0.62 -0.2
94,742 + AO356_00450 0.62 +0.5
95,173 + -0.6
95,208 + +0.6
95,209 - +0.9
95,209 - +1.1
95,241 + -0.1
95,241 + +0.4
95,242 - -0.0
95,242 - -0.1
95,245 + +1.1
95,245 + +0.7
95,245 + -0.0
95,246 - +1.1
95,308 + -0.7
95,309 - +0.7
95,662 + AO356_00455 0.55 -1.5
95,663 - AO356_00455 0.55 -1.0
95,663 - AO356_00455 0.55 -0.6
95,785 + AO356_00455 0.71 -1.4
95,786 - AO356_00455 0.71 -2.7
95,869 + AO356_00455 0.82 -1.2
95,869 + AO356_00455 0.82 -0.1
95,869 + AO356_00455 0.82 -1.7
95,869 + AO356_00455 0.82 -1.0
95,869 + AO356_00455 0.82 -0.6
95,869 + AO356_00455 0.82 -0.8
95,870 - AO356_00455 0.82 -0.0
96,033 + -1.1
96,033 + +0.1
96,034 - +0.1
96,034 - +0.4
96,120 - +0.4
96,167 + -0.7
96,167 + -0.1
96,239 + +0.4
96,240 - -0.4

Or see this region's nucleotide sequence