Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3240

Experiment: m.b. Aluminum chloride 0.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_3237 and Dshi_3238 are separated by 10 nucleotidesDshi_3238 and Dshi_3239 are separated by 41 nucleotidesDshi_3239 and Dshi_3240 are separated by 6 nucleotidesDshi_3240 and Dshi_3241 are separated by 217 nucleotides Dshi_3237: Dshi_3237 - protein of unknown function DUF897 (RefSeq), at 3,406,143 to 3,407,117 _3237 Dshi_3238: Dshi_3238 - hypothetical protein (RefSeq), at 3,407,128 to 3,407,439 _3238 Dshi_3239: Dshi_3239 - hypothetical protein (RefSeq), at 3,407,481 to 3,407,954 _3239 Dshi_3240: Dshi_3240 - aspartate-semialdehyde dehydrogenase (RefSeq), at 3,407,961 to 3,408,983 _3240 Dshi_3241: Dshi_3241 - glycosyl transferase group 1 (RefSeq), at 3,409,201 to 3,410,250 _3241 Position (kb) 3407 3408 3409Strain fitness (log2 ratio) -3 -2 -1 0 1at 3407.207 kb on + strand, within Dshi_3238at 3407.271 kb on - strand, within Dshi_3238at 3407.315 kb on - strand, within Dshi_3238at 3407.665 kb on - strand, within Dshi_3239at 3407.775 kb on + strand, within Dshi_3239at 3407.778 kb on - strand, within Dshi_3239at 3407.844 kb on - strand, within Dshi_3239at 3407.924 kb on + strandat 3407.932 kb on - strandat 3409.178 kb on - strandat 3409.296 kb on - strandat 3409.350 kb on + strand, within Dshi_3241at 3409.414 kb on + strand, within Dshi_3241at 3409.532 kb on + strand, within Dshi_3241at 3409.796 kb on - strand, within Dshi_3241at 3409.857 kb on + strand, within Dshi_3241

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 0.5 mM
remove
3,407,207 + Dshi_3238 0.25 -0.2
3,407,271 - Dshi_3238 0.46 -0.8
3,407,315 - Dshi_3238 0.60 +1.0
3,407,665 - Dshi_3239 0.39 -0.8
3,407,775 + Dshi_3239 0.62 +0.2
3,407,778 - Dshi_3239 0.63 -0.1
3,407,844 - Dshi_3239 0.77 -0.1
3,407,924 + +0.2
3,407,932 - +0.2
3,409,178 - +0.1
3,409,296 - -1.9
3,409,350 + Dshi_3241 0.14 -2.5
3,409,414 + Dshi_3241 0.20 -1.1
3,409,532 + Dshi_3241 0.32 -3.2
3,409,796 - Dshi_3241 0.57 -2.2
3,409,857 + Dshi_3241 0.62 -3.4

Or see this region's nucleotide sequence