Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3216

Experiment: m.b. Aluminum chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3215 and Dshi_3216 overlap by 8 nucleotidesDshi_3216 and Dshi_3217 overlap by 8 nucleotides Dshi_3215: Dshi_3215 - CRISPR-associated protein, Cse1 family (RefSeq), at 3,384,277 to 3,385,797 _3215 Dshi_3216: Dshi_3216 - hypothetical protein (RefSeq), at 3,385,790 to 3,386,365 _3216 Dshi_3217: Dshi_3217 - CRISPR-associated protein, Cse4 family (RefSeq), at 3,386,358 to 3,387,479 _3217 Position (kb) 3385 3386 3387Strain fitness (log2 ratio) -3 -2 -1 0 1at 3384.872 kb on + strand, within Dshi_3215at 3384.883 kb on + strand, within Dshi_3215at 3384.939 kb on - strand, within Dshi_3215at 3384.939 kb on - strand, within Dshi_3215at 3384.948 kb on + strand, within Dshi_3215at 3384.948 kb on + strand, within Dshi_3215at 3384.953 kb on + strand, within Dshi_3215at 3384.953 kb on + strand, within Dshi_3215at 3384.953 kb on + strand, within Dshi_3215at 3384.953 kb on + strand, within Dshi_3215at 3384.953 kb on + strand, within Dshi_3215at 3384.953 kb on + strand, within Dshi_3215at 3384.961 kb on - strand, within Dshi_3215at 3385.006 kb on - strand, within Dshi_3215at 3385.279 kb on + strand, within Dshi_3215at 3385.319 kb on - strand, within Dshi_3215at 3385.385 kb on + strand, within Dshi_3215at 3385.456 kb on + strand, within Dshi_3215at 3385.461 kb on + strand, within Dshi_3215at 3385.544 kb on - strand, within Dshi_3215at 3385.635 kb on + strand, within Dshi_3215at 3385.677 kb on - strandat 3385.761 kb on + strandat 3385.761 kb on + strandat 3385.786 kb on + strandat 3385.847 kb on - strandat 3385.909 kb on + strand, within Dshi_3216at 3385.960 kb on - strand, within Dshi_3216at 3386.032 kb on - strand, within Dshi_3216at 3386.157 kb on - strand, within Dshi_3216at 3386.215 kb on + strand, within Dshi_3216at 3386.384 kb on - strandat 3386.523 kb on - strand, within Dshi_3217at 3386.672 kb on - strand, within Dshi_3217at 3386.799 kb on + strand, within Dshi_3217at 3386.813 kb on - strand, within Dshi_3217at 3386.855 kb on + strand, within Dshi_3217at 3386.888 kb on + strand, within Dshi_3217at 3386.937 kb on + strand, within Dshi_3217at 3386.945 kb on - strand, within Dshi_3217at 3386.945 kb on - strand, within Dshi_3217at 3386.952 kb on - strand, within Dshi_3217at 3387.047 kb on + strand, within Dshi_3217at 3387.083 kb on - strand, within Dshi_3217at 3387.104 kb on - strand, within Dshi_3217at 3387.117 kb on - strand, within Dshi_3217at 3387.138 kb on + strand, within Dshi_3217at 3387.146 kb on - strand, within Dshi_3217at 3387.175 kb on + strand, within Dshi_3217at 3387.187 kb on + strand, within Dshi_3217at 3387.195 kb on - strand, within Dshi_3217at 3387.288 kb on - strand, within Dshi_3217

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 0.5 mM
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3,384,872 + Dshi_3215 0.39 +0.8
3,384,883 + Dshi_3215 0.40 -0.8
3,384,939 - Dshi_3215 0.44 -0.3
3,384,939 - Dshi_3215 0.44 -0.9
3,384,948 + Dshi_3215 0.44 +0.1
3,384,948 + Dshi_3215 0.44 +0.9
3,384,953 + Dshi_3215 0.44 -0.1
3,384,953 + Dshi_3215 0.44 +0.0
3,384,953 + Dshi_3215 0.44 -3.2
3,384,953 + Dshi_3215 0.44 -0.4
3,384,953 + Dshi_3215 0.44 +0.6
3,384,953 + Dshi_3215 0.44 -1.1
3,384,961 - Dshi_3215 0.45 -0.5
3,385,006 - Dshi_3215 0.48 +0.5
3,385,279 + Dshi_3215 0.66 -0.8
3,385,319 - Dshi_3215 0.69 -1.0
3,385,385 + Dshi_3215 0.73 -0.8
3,385,456 + Dshi_3215 0.78 -0.7
3,385,461 + Dshi_3215 0.78 +0.5
3,385,544 - Dshi_3215 0.83 -0.7
3,385,635 + Dshi_3215 0.89 +0.1
3,385,677 - +0.5
3,385,761 + +0.0
3,385,761 + +0.1
3,385,786 + -1.0
3,385,847 - +0.3
3,385,909 + Dshi_3216 0.21 -1.0
3,385,960 - Dshi_3216 0.30 -0.5
3,386,032 - Dshi_3216 0.42 -0.5
3,386,157 - Dshi_3216 0.64 -1.0
3,386,215 + Dshi_3216 0.74 -0.1
3,386,384 - -1.2
3,386,523 - Dshi_3217 0.15 -0.0
3,386,672 - Dshi_3217 0.28 -0.3
3,386,799 + Dshi_3217 0.39 +0.2
3,386,813 - Dshi_3217 0.41 -0.1
3,386,855 + Dshi_3217 0.44 -0.5
3,386,888 + Dshi_3217 0.47 -1.5
3,386,937 + Dshi_3217 0.52 -0.1
3,386,945 - Dshi_3217 0.52 +0.7
3,386,945 - Dshi_3217 0.52 -0.1
3,386,952 - Dshi_3217 0.53 +1.2
3,387,047 + Dshi_3217 0.61 +0.4
3,387,083 - Dshi_3217 0.65 +0.3
3,387,104 - Dshi_3217 0.66 +0.1
3,387,117 - Dshi_3217 0.68 -0.2
3,387,138 + Dshi_3217 0.70 +0.1
3,387,146 - Dshi_3217 0.70 +0.4
3,387,175 + Dshi_3217 0.73 -0.2
3,387,187 + Dshi_3217 0.74 -1.4
3,387,195 - Dshi_3217 0.75 -0.1
3,387,288 - Dshi_3217 0.83 -0.0

Or see this region's nucleotide sequence