Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3077

Experiment: m.b. Aluminum chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3075 and Dshi_3076 are separated by 159 nucleotidesDshi_3076 and Dshi_3077 are separated by 77 nucleotidesDshi_3077 and Dshi_3078 are separated by 63 nucleotidesDshi_3078 and Dshi_3079 overlap by 4 nucleotides Dshi_3075: Dshi_3075 - Electron-transferring-flavoproteindehydrogenase (RefSeq), at 3,242,821 to 3,244,470 _3075 Dshi_3076: Dshi_3076 - transcription elongation factor GreA (RefSeq), at 3,244,630 to 3,245,145 _3076 Dshi_3077: Dshi_3077 - hypothetical protein (RefSeq), at 3,245,223 to 3,246,209 _3077 Dshi_3078: Dshi_3078 - AzlC family protein (RefSeq), at 3,246,273 to 3,246,977 _3078 Dshi_3079: Dshi_3079 - branched-chain amino acid transport (RefSeq), at 3,246,974 to 3,247,306 _3079 Position (kb) 3245 3246 3247Strain fitness (log2 ratio) -2 -1 0 1 2at 3244.482 kb on - strandat 3244.573 kb on + strandat 3244.581 kb on - strandat 3244.593 kb on + strandat 3244.602 kb on - strandat 3244.606 kb on - strandat 3244.724 kb on - strand, within Dshi_3076at 3244.734 kb on + strand, within Dshi_3076at 3244.740 kb on - strand, within Dshi_3076at 3244.742 kb on - strand, within Dshi_3076at 3244.772 kb on + strand, within Dshi_3076at 3244.891 kb on + strand, within Dshi_3076at 3244.910 kb on - strand, within Dshi_3076at 3244.998 kb on + strand, within Dshi_3076at 3245.063 kb on + strand, within Dshi_3076at 3245.081 kb on + strand, within Dshi_3076at 3245.096 kb on - strandat 3245.199 kb on + strandat 3245.215 kb on + strandat 3245.521 kb on + strand, within Dshi_3077at 3245.672 kb on + strand, within Dshi_3077at 3245.792 kb on + strand, within Dshi_3077at 3245.792 kb on + strand, within Dshi_3077at 3245.805 kb on - strand, within Dshi_3077at 3246.122 kb on - strandat 3246.217 kb on + strandat 3246.270 kb on + strandat 3246.369 kb on - strandat 3246.491 kb on - strand, within Dshi_3078at 3246.607 kb on - strand, within Dshi_3078at 3246.726 kb on - strand, within Dshi_3078at 3246.819 kb on - strand, within Dshi_3078at 3246.881 kb on - strand, within Dshi_3078at 3247.018 kb on + strand, within Dshi_3079

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 0.5 mM
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3,244,482 - -0.1
3,244,573 + -0.3
3,244,581 - +2.1
3,244,593 + -0.3
3,244,602 - -0.3
3,244,606 - -0.2
3,244,724 - Dshi_3076 0.18 +0.1
3,244,734 + Dshi_3076 0.20 -0.1
3,244,740 - Dshi_3076 0.21 -0.5
3,244,742 - Dshi_3076 0.22 -1.3
3,244,772 + Dshi_3076 0.28 -0.1
3,244,891 + Dshi_3076 0.51 +0.3
3,244,910 - Dshi_3076 0.54 -1.2
3,244,998 + Dshi_3076 0.71 +0.4
3,245,063 + Dshi_3076 0.84 -1.5
3,245,081 + Dshi_3076 0.87 -0.1
3,245,096 - -0.4
3,245,199 + -1.4
3,245,215 + -1.4
3,245,521 + Dshi_3077 0.30 -0.4
3,245,672 + Dshi_3077 0.45 -0.7
3,245,792 + Dshi_3077 0.58 +0.4
3,245,792 + Dshi_3077 0.58 -1.1
3,245,805 - Dshi_3077 0.59 -1.6
3,246,122 - -0.5
3,246,217 + +0.1
3,246,270 + -2.1
3,246,369 - -1.5
3,246,491 - Dshi_3078 0.31 -0.5
3,246,607 - Dshi_3078 0.47 +0.2
3,246,726 - Dshi_3078 0.64 -0.5
3,246,819 - Dshi_3078 0.77 -0.4
3,246,881 - Dshi_3078 0.86 -0.3
3,247,018 + Dshi_3079 0.13 +0.1

Or see this region's nucleotide sequence