Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_3071

Experiment: m.b. Aluminum chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_3069 and Dshi_3070 are separated by 95 nucleotidesDshi_3070 and Dshi_3071 overlap by 1 nucleotidesDshi_3071 and Dshi_3072 are separated by 55 nucleotides Dshi_3069: Dshi_3069 - protein of unknown function DUF465 (RefSeq), at 3,237,811 to 3,237,978 _3069 Dshi_3070: Dshi_3070 - methyltransferase small (RefSeq), at 3,238,074 to 3,238,844 _3070 Dshi_3071: Dshi_3071 - Beta tubulin, autoregulation binding site (RefSeq), at 3,238,844 to 3,239,071 _3071 Dshi_3072: Dshi_3072 - Polyprenyl synthetase (RefSeq), at 3,239,127 to 3,240,131 _3072 Position (kb) 3238 3239 3240Strain fitness (log2 ratio) -2 -1 0 1at 3237.901 kb on + strand, within Dshi_3069at 3237.939 kb on + strand, within Dshi_3069at 3238.014 kb on + strandat 3238.409 kb on + strand, within Dshi_3070at 3238.435 kb on - strand, within Dshi_3070at 3238.454 kb on + strand, within Dshi_3070at 3238.459 kb on + strand, within Dshi_3070at 3238.494 kb on - strand, within Dshi_3070at 3238.655 kb on + strand, within Dshi_3070at 3238.655 kb on + strand, within Dshi_3070at 3238.748 kb on + strand, within Dshi_3070at 3238.874 kb on + strand, within Dshi_3071at 3238.994 kb on + strand, within Dshi_3071at 3238.994 kb on + strand, within Dshi_3071at 3239.002 kb on - strand, within Dshi_3071at 3239.015 kb on - strand, within Dshi_3071at 3239.065 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 0.5 mM
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3,237,901 + Dshi_3069 0.54 +0.4
3,237,939 + Dshi_3069 0.76 +0.9
3,238,014 + -0.8
3,238,409 + Dshi_3070 0.43 -0.6
3,238,435 - Dshi_3070 0.47 -0.1
3,238,454 + Dshi_3070 0.49 -1.5
3,238,459 + Dshi_3070 0.50 +1.3
3,238,494 - Dshi_3070 0.54 -1.1
3,238,655 + Dshi_3070 0.75 -0.1
3,238,655 + Dshi_3070 0.75 +0.8
3,238,748 + Dshi_3070 0.87 -0.1
3,238,874 + Dshi_3071 0.13 -0.5
3,238,994 + Dshi_3071 0.66 -0.9
3,238,994 + Dshi_3071 0.66 -0.7
3,239,002 - Dshi_3071 0.69 -2.5
3,239,015 - Dshi_3071 0.75 -0.4
3,239,065 + -1.3

Or see this region's nucleotide sequence