Experiment: m.b. Aluminum chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_3045 and Dshi_3046 are separated by 3 nucleotides Dshi_3046 and Dshi_3047 overlap by 4 nucleotides
Dshi_3045: Dshi_3045 - glycosyl transferase family 2 (RefSeq), at 3,213,310 to 3,214,326
_3045
Dshi_3046: Dshi_3046 - Hydroxypyruvate reductase (RefSeq), at 3,214,330 to 3,215,577
_3046
Dshi_3047: Dshi_3047 - 6-phosphogluconate dehydrogenase NAD-binding (RefSeq), at 3,215,574 to 3,216,458
_3047
Position (kb)
3214
3215
3216 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3213.334 kb on - strand at 3213.455 kb on + strand, within Dshi_3045 at 3213.456 kb on + strand, within Dshi_3045 at 3213.505 kb on + strand, within Dshi_3045 at 3213.545 kb on - strand, within Dshi_3045 at 3213.571 kb on - strand, within Dshi_3045 at 3213.911 kb on + strand, within Dshi_3045 at 3213.911 kb on + strand, within Dshi_3045 at 3214.076 kb on - strand, within Dshi_3045 at 3214.087 kb on - strand, within Dshi_3045 at 3214.186 kb on + strand, within Dshi_3045 at 3214.347 kb on - strand at 3214.347 kb on - strand at 3214.450 kb on - strand at 3214.559 kb on - strand, within Dshi_3046 at 3214.892 kb on + strand, within Dshi_3046 at 3215.072 kb on - strand, within Dshi_3046 at 3215.332 kb on - strand, within Dshi_3046 at 3215.389 kb on + strand, within Dshi_3046 at 3215.534 kb on + strand at 3215.615 kb on + strand at 3215.615 kb on + strand at 3215.623 kb on - strand at 3215.623 kb on - strand at 3215.707 kb on + strand, within Dshi_3047 at 3215.707 kb on + strand, within Dshi_3047 at 3215.715 kb on - strand, within Dshi_3047 at 3215.981 kb on - strand, within Dshi_3047 at 3215.988 kb on - strand, within Dshi_3047 at 3216.020 kb on + strand, within Dshi_3047 at 3216.181 kb on + strand, within Dshi_3047 at 3216.311 kb on + strand, within Dshi_3047 at 3216.366 kb on + strand, within Dshi_3047 at 3216.428 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 0.5 mM remove 3,213,334 - -4.3 3,213,455 + Dshi_3045 0.14 -2.7 3,213,456 + Dshi_3045 0.14 -0.8 3,213,505 + Dshi_3045 0.19 -1.5 3,213,545 - Dshi_3045 0.23 -2.3 3,213,571 - Dshi_3045 0.26 -1.6 3,213,911 + Dshi_3045 0.59 -1.9 3,213,911 + Dshi_3045 0.59 -3.0 3,214,076 - Dshi_3045 0.75 -1.6 3,214,087 - Dshi_3045 0.76 -2.1 3,214,186 + Dshi_3045 0.86 -2.6 3,214,347 - -0.7 3,214,347 - -1.2 3,214,450 - -1.1 3,214,559 - Dshi_3046 0.18 -0.3 3,214,892 + Dshi_3046 0.45 +1.5 3,215,072 - Dshi_3046 0.59 -0.6 3,215,332 - Dshi_3046 0.80 -0.0 3,215,389 + Dshi_3046 0.85 -0.2 3,215,534 + -1.5 3,215,615 + +0.9 3,215,615 + -0.4 3,215,623 - -0.4 3,215,623 - -0.6 3,215,707 + Dshi_3047 0.15 -1.2 3,215,707 + Dshi_3047 0.15 +1.0 3,215,715 - Dshi_3047 0.16 -0.4 3,215,981 - Dshi_3047 0.46 +0.2 3,215,988 - Dshi_3047 0.47 +0.3 3,216,020 + Dshi_3047 0.50 -0.6 3,216,181 + Dshi_3047 0.69 -0.0 3,216,311 + Dshi_3047 0.83 -0.5 3,216,366 + Dshi_3047 0.89 +1.1 3,216,428 + -0.1
Or see this region's nucleotide sequence