Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2943

Experiment: m.b. Aluminum chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2941 and Dshi_2942 are separated by 90 nucleotidesDshi_2942 and Dshi_2943 are separated by 66 nucleotidesDshi_2943 and Dshi_2944 overlap by 4 nucleotidesDshi_2944 and Dshi_2945 overlap by 4 nucleotides Dshi_2941: Dshi_2941 - hypothetical protein (RefSeq), at 3,100,657 to 3,101,940 _2941 Dshi_2942: Dshi_2942 - ChaC family protein (RefSeq), at 3,102,031 to 3,102,573 _2942 Dshi_2943: Dshi_2943 - hypothetical protein (RefSeq), at 3,102,640 to 3,103,638 _2943 Dshi_2944: Dshi_2944 - Extensin family protein (RefSeq), at 3,103,635 to 3,104,450 _2944 Dshi_2945: Dshi_2945 - Prephenate dehydrogenase (RefSeq), at 3,104,447 to 3,105,388 _2945 Position (kb) 3102 3103 3104Strain fitness (log2 ratio) -2 -1 0 1at 3101.770 kb on + strand, within Dshi_2941at 3101.942 kb on + strandat 3101.966 kb on - strandat 3102.029 kb on + strandat 3102.382 kb on + strand, within Dshi_2942at 3102.445 kb on + strand, within Dshi_2942at 3102.686 kb on - strandat 3102.815 kb on + strand, within Dshi_2943at 3102.823 kb on - strand, within Dshi_2943at 3103.169 kb on + strand, within Dshi_2943at 3103.497 kb on - strand, within Dshi_2943at 3103.632 kb on + strandat 3103.656 kb on - strandat 3103.733 kb on - strand, within Dshi_2944at 3103.854 kb on + strand, within Dshi_2944at 3103.857 kb on - strand, within Dshi_2944at 3103.908 kb on + strand, within Dshi_2944at 3104.089 kb on - strand, within Dshi_2944at 3104.259 kb on + strand, within Dshi_2944at 3104.262 kb on - strand, within Dshi_2944at 3104.278 kb on - strand, within Dshi_2944at 3104.507 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 0.5 mM
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3,101,770 + Dshi_2941 0.87 -2.3
3,101,942 + +0.4
3,101,966 - -1.7
3,102,029 + +0.0
3,102,382 + Dshi_2942 0.65 +0.4
3,102,445 + Dshi_2942 0.76 +0.3
3,102,686 - +0.3
3,102,815 + Dshi_2943 0.18 -2.0
3,102,823 - Dshi_2943 0.18 -0.2
3,103,169 + Dshi_2943 0.53 -1.0
3,103,497 - Dshi_2943 0.86 -0.8
3,103,632 + -0.4
3,103,656 - -0.4
3,103,733 - Dshi_2944 0.12 +0.0
3,103,854 + Dshi_2944 0.27 +0.1
3,103,857 - Dshi_2944 0.27 -0.3
3,103,908 + Dshi_2944 0.33 -0.9
3,104,089 - Dshi_2944 0.56 -0.1
3,104,259 + Dshi_2944 0.76 -0.6
3,104,262 - Dshi_2944 0.77 -0.1
3,104,278 - Dshi_2944 0.79 -0.8
3,104,507 + +1.3

Or see this region's nucleotide sequence