Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2889

Experiment: m.b. Aluminum chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2887 and Dshi_2888 are separated by 74 nucleotidesDshi_2888 and Dshi_2889 overlap by 4 nucleotidesDshi_2889 and Dshi_2890 overlap by 4 nucleotidesDshi_2890 and Dshi_2891 overlap by 4 nucleotides Dshi_2887: Dshi_2887 - succinic semialdehyde dehydrogenase (RefSeq), at 3,043,208 to 3,044,686 _2887 Dshi_2888: Dshi_2888 - putative esterase/lipase/thioesterase (RefSeq), at 3,044,761 to 3,045,534 _2888 Dshi_2889: Dshi_2889 - peptidase S58 DmpA (RefSeq), at 3,045,531 to 3,046,514 _2889 Dshi_2890: Dshi_2890 - hypothetical protein (RefSeq), at 3,046,511 to 3,046,822 _2890 Dshi_2891: Dshi_2891 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,046,819 to 3,047,547 _2891 Position (kb) 3045 3046 3047Strain fitness (log2 ratio) -3 -2 -1 0 1at 3044.721 kb on + strandat 3044.896 kb on - strand, within Dshi_2888at 3045.000 kb on - strand, within Dshi_2888at 3045.027 kb on + strand, within Dshi_2888at 3045.070 kb on - strand, within Dshi_2888at 3045.296 kb on + strand, within Dshi_2888at 3045.296 kb on - strand, within Dshi_2888at 3045.383 kb on - strand, within Dshi_2888at 3045.388 kb on - strand, within Dshi_2888at 3045.424 kb on + strand, within Dshi_2888at 3045.429 kb on + strand, within Dshi_2888at 3045.437 kb on - strand, within Dshi_2888at 3045.556 kb on + strandat 3045.673 kb on - strand, within Dshi_2889at 3045.698 kb on + strand, within Dshi_2889at 3045.881 kb on - strand, within Dshi_2889at 3045.940 kb on - strand, within Dshi_2889at 3046.032 kb on - strand, within Dshi_2889at 3046.057 kb on + strand, within Dshi_2889at 3046.140 kb on + strand, within Dshi_2889at 3046.241 kb on - strand, within Dshi_2889at 3046.274 kb on + strand, within Dshi_2889at 3046.495 kb on + strandat 3046.548 kb on + strand, within Dshi_2890at 3046.662 kb on + strand, within Dshi_2890at 3046.707 kb on - strand, within Dshi_2890at 3046.793 kb on + strandat 3046.963 kb on + strand, within Dshi_2891at 3046.973 kb on - strand, within Dshi_2891at 3047.133 kb on + strand, within Dshi_2891at 3047.166 kb on - strand, within Dshi_2891at 3047.221 kb on + strand, within Dshi_2891at 3047.267 kb on + strand, within Dshi_2891at 3047.290 kb on - strand, within Dshi_2891at 3047.455 kb on - strand, within Dshi_2891

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 0.5 mM
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3,044,721 + -0.7
3,044,896 - Dshi_2888 0.17 -0.5
3,045,000 - Dshi_2888 0.31 -1.2
3,045,027 + Dshi_2888 0.34 -0.7
3,045,070 - Dshi_2888 0.40 +0.8
3,045,296 + Dshi_2888 0.69 -0.3
3,045,296 - Dshi_2888 0.69 +0.3
3,045,383 - Dshi_2888 0.80 +0.1
3,045,388 - Dshi_2888 0.81 -0.2
3,045,424 + Dshi_2888 0.86 -0.3
3,045,429 + Dshi_2888 0.86 -1.1
3,045,437 - Dshi_2888 0.87 +0.5
3,045,556 + -0.3
3,045,673 - Dshi_2889 0.14 +0.5
3,045,698 + Dshi_2889 0.17 +0.1
3,045,881 - Dshi_2889 0.36 -1.3
3,045,940 - Dshi_2889 0.42 -1.1
3,046,032 - Dshi_2889 0.51 -0.5
3,046,057 + Dshi_2889 0.53 -0.6
3,046,140 + Dshi_2889 0.62 +0.1
3,046,241 - Dshi_2889 0.72 -0.2
3,046,274 + Dshi_2889 0.76 -0.5
3,046,495 + +0.3
3,046,548 + Dshi_2890 0.12 -0.5
3,046,662 + Dshi_2890 0.48 +0.7
3,046,707 - Dshi_2890 0.63 -0.1
3,046,793 + -0.5
3,046,963 + Dshi_2891 0.20 +0.7
3,046,973 - Dshi_2891 0.21 -1.5
3,047,133 + Dshi_2891 0.43 +0.0
3,047,166 - Dshi_2891 0.48 -3.1
3,047,221 + Dshi_2891 0.55 -0.3
3,047,267 + Dshi_2891 0.61 -0.7
3,047,290 - Dshi_2891 0.65 +0.4
3,047,455 - Dshi_2891 0.87 +0.5

Or see this region's nucleotide sequence