Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1699

Experiment: m.b. Aluminum chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1698 and Dshi_1699 are separated by 232 nucleotidesDshi_1699 and Dshi_1700 are separated by 305 nucleotides Dshi_1698: Dshi_1698 - cysteinyl-tRNA synthetase (RefSeq), at 1,767,125 to 1,768,501 _1698 Dshi_1699: Dshi_1699 - hypothetical protein (RefSeq), at 1,768,734 to 1,769,330 _1699 Dshi_1700: Dshi_1700 - short-chain dehydrogenase/reductase SDR (RefSeq), at 1,769,636 to 1,770,391 _1700 Position (kb) 1768 1769 1770Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1768.632 kb on + strandat 1768.652 kb on - strandat 1768.732 kb on + strandat 1768.849 kb on - strand, within Dshi_1699at 1768.949 kb on - strand, within Dshi_1699at 1769.172 kb on - strand, within Dshi_1699at 1769.243 kb on + strand, within Dshi_1699at 1769.243 kb on + strand, within Dshi_1699at 1769.251 kb on - strand, within Dshi_1699at 1769.351 kb on - strandat 1769.351 kb on - strandat 1769.365 kb on + strandat 1769.429 kb on - strandat 1769.521 kb on - strandat 1769.533 kb on - strandat 1769.533 kb on - strandat 1769.533 kb on - strandat 1769.533 kb on - strandat 1769.540 kb on + strandat 1769.545 kb on + strandat 1769.863 kb on - strand, within Dshi_1700at 1769.863 kb on - strand, within Dshi_1700at 1769.911 kb on + strand, within Dshi_1700at 1770.142 kb on + strand, within Dshi_1700at 1770.142 kb on + strand, within Dshi_1700at 1770.142 kb on + strand, within Dshi_1700

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 0.5 mM
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1,768,632 + -0.2
1,768,652 - -1.5
1,768,732 + -0.9
1,768,849 - Dshi_1699 0.19 -0.7
1,768,949 - Dshi_1699 0.36 -0.8
1,769,172 - Dshi_1699 0.73 -0.4
1,769,243 + Dshi_1699 0.85 -0.3
1,769,243 + Dshi_1699 0.85 -2.8
1,769,251 - Dshi_1699 0.87 -0.6
1,769,351 - -0.3
1,769,351 - -0.6
1,769,365 + -0.6
1,769,429 - -0.1
1,769,521 - -1.6
1,769,533 - +0.0
1,769,533 - +0.7
1,769,533 - +1.9
1,769,533 - -1.3
1,769,540 + -0.8
1,769,545 + -0.6
1,769,863 - Dshi_1700 0.30 -1.1
1,769,863 - Dshi_1700 0.30 -1.5
1,769,911 + Dshi_1700 0.36 -1.1
1,770,142 + Dshi_1700 0.67 +0.8
1,770,142 + Dshi_1700 0.67 -0.2
1,770,142 + Dshi_1700 0.67 +1.7

Or see this region's nucleotide sequence