Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1564

Experiment: m.b. Aluminum chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1563 and Dshi_1564 are separated by 188 nucleotidesDshi_1564 and Dshi_1565 are separated by 74 nucleotides Dshi_1563: Dshi_1563 - Porphobilinogen synthase (RefSeq), at 1,626,965 to 1,627,966 _1563 Dshi_1564: Dshi_1564 - twin-arginine translocation pathway signal (RefSeq), at 1,628,155 to 1,628,724 _1564 Dshi_1565: Dshi_1565 - peptidase S45 penicillin amidase (RefSeq), at 1,628,799 to 1,631,282 _1565 Position (kb) 1628 1629Strain fitness (log2 ratio) -3 -2 -1 0 1at 1628.381 kb on + strand, within Dshi_1564at 1628.413 kb on - strand, within Dshi_1564at 1628.554 kb on + strand, within Dshi_1564at 1628.615 kb on - strand, within Dshi_1564at 1628.781 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 0.5 mM
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1,628,381 + Dshi_1564 0.40 -3.7
1,628,413 - Dshi_1564 0.45 -1.6
1,628,554 + Dshi_1564 0.70 -1.2
1,628,615 - Dshi_1564 0.81 -2.0
1,628,781 + +0.5

Or see this region's nucleotide sequence