Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0397

Experiment: m.b. Aluminum chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0396 and Dshi_0397 are separated by 96 nucleotidesDshi_0397 and Dshi_0398 overlap by 8 nucleotides Dshi_0396: Dshi_0396 - Recombinase (RefSeq), at 386,137 to 387,813 _0396 Dshi_0397: Dshi_0397 - integrase family protein (RefSeq), at 387,910 to 388,986 _0397 Dshi_0398: Dshi_0398 - integrase family protein (RefSeq), at 388,979 to 390,658 _0398 Position (kb) 387 388 389Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 386.920 kb on - strand, within Dshi_0396at 386.936 kb on - strand, within Dshi_0396at 386.966 kb on - strand, within Dshi_0396at 386.967 kb on + strand, within Dshi_0396at 387.011 kb on - strand, within Dshi_0396at 387.021 kb on - strand, within Dshi_0396at 387.084 kb on - strand, within Dshi_0396at 387.155 kb on - strand, within Dshi_0396at 387.182 kb on - strand, within Dshi_0396at 387.203 kb on - strand, within Dshi_0396at 387.203 kb on - strand, within Dshi_0396at 387.250 kb on - strand, within Dshi_0396at 387.250 kb on - strand, within Dshi_0396at 387.250 kb on - strand, within Dshi_0396at 387.250 kb on - strand, within Dshi_0396at 387.260 kb on - strand, within Dshi_0396at 387.274 kb on + strand, within Dshi_0396at 387.315 kb on + strand, within Dshi_0396at 387.323 kb on - strand, within Dshi_0396at 387.373 kb on + strand, within Dshi_0396at 387.375 kb on - strand, within Dshi_0396at 387.493 kb on - strand, within Dshi_0396at 387.520 kb on + strand, within Dshi_0396at 387.520 kb on - strand, within Dshi_0396at 387.528 kb on + strand, within Dshi_0396at 387.531 kb on - strand, within Dshi_0396at 387.552 kb on - strand, within Dshi_0396at 387.606 kb on + strand, within Dshi_0396at 387.612 kb on - strand, within Dshi_0396at 387.666 kb on + strandat 387.666 kb on + strandat 387.666 kb on + strandat 387.674 kb on - strandat 387.675 kb on - strandat 387.706 kb on + strandat 387.708 kb on - strandat 387.714 kb on - strandat 387.784 kb on - strandat 387.806 kb on - strandat 387.806 kb on - strandat 387.812 kb on + strandat 387.820 kb on - strandat 387.825 kb on - strandat 387.826 kb on - strandat 387.829 kb on + strandat 387.830 kb on + strandat 387.831 kb on - strandat 387.842 kb on - strandat 387.885 kb on + strandat 387.893 kb on + strandat 387.917 kb on - strandat 387.946 kb on - strandat 387.986 kb on - strandat 387.989 kb on + strandat 387.989 kb on + strandat 387.996 kb on + strandat 387.996 kb on - strandat 388.007 kb on - strandat 388.009 kb on + strandat 388.017 kb on - strandat 388.030 kb on + strand, within Dshi_0397at 388.030 kb on + strand, within Dshi_0397at 388.086 kb on + strand, within Dshi_0397at 388.134 kb on + strand, within Dshi_0397at 388.134 kb on - strand, within Dshi_0397at 388.142 kb on - strand, within Dshi_0397at 388.149 kb on + strand, within Dshi_0397at 388.199 kb on - strand, within Dshi_0397at 388.241 kb on - strand, within Dshi_0397at 388.258 kb on - strand, within Dshi_0397at 388.299 kb on + strand, within Dshi_0397at 388.328 kb on - strand, within Dshi_0397at 388.367 kb on - strand, within Dshi_0397at 388.403 kb on + strand, within Dshi_0397at 388.405 kb on + strand, within Dshi_0397at 388.413 kb on - strand, within Dshi_0397at 388.451 kb on + strand, within Dshi_0397at 388.519 kb on + strand, within Dshi_0397at 388.564 kb on + strand, within Dshi_0397at 388.630 kb on - strand, within Dshi_0397at 388.634 kb on + strand, within Dshi_0397at 388.643 kb on + strand, within Dshi_0397at 388.670 kb on + strand, within Dshi_0397at 388.713 kb on - strand, within Dshi_0397at 388.719 kb on + strand, within Dshi_0397at 388.788 kb on + strand, within Dshi_0397at 388.788 kb on + strand, within Dshi_0397at 388.788 kb on + strand, within Dshi_0397at 388.796 kb on - strand, within Dshi_0397at 388.796 kb on - strand, within Dshi_0397at 388.796 kb on - strand, within Dshi_0397at 388.796 kb on - strand, within Dshi_0397at 388.796 kb on - strand, within Dshi_0397at 388.796 kb on - strand, within Dshi_0397at 388.808 kb on + strand, within Dshi_0397at 388.824 kb on + strand, within Dshi_0397at 388.824 kb on + strand, within Dshi_0397at 388.824 kb on + strand, within Dshi_0397at 388.824 kb on + strand, within Dshi_0397at 388.832 kb on - strand, within Dshi_0397at 388.857 kb on + strand, within Dshi_0397at 388.857 kb on + strand, within Dshi_0397at 388.865 kb on - strand, within Dshi_0397at 388.878 kb on + strand, within Dshi_0397at 388.886 kb on - strandat 388.886 kb on - strandat 388.886 kb on - strandat 388.886 kb on - strandat 388.937 kb on + strandat 388.938 kb on + strandat 388.945 kb on - strandat 388.947 kb on + strandat 388.979 kb on - strandat 389.016 kb on + strandat 389.026 kb on - strandat 389.037 kb on + strandat 389.038 kb on - strandat 389.085 kb on + strandat 389.140 kb on + strandat 389.152 kb on - strand, within Dshi_0398at 389.170 kb on + strand, within Dshi_0398at 389.178 kb on - strand, within Dshi_0398at 389.178 kb on - strand, within Dshi_0398at 389.178 kb on - strand, within Dshi_0398at 389.178 kb on - strand, within Dshi_0398at 389.335 kb on + strand, within Dshi_0398at 389.335 kb on + strand, within Dshi_0398at 389.335 kb on - strand, within Dshi_0398at 389.343 kb on - strand, within Dshi_0398at 389.353 kb on - strand, within Dshi_0398at 389.370 kb on + strand, within Dshi_0398at 389.378 kb on + strand, within Dshi_0398at 389.378 kb on + strand, within Dshi_0398at 389.378 kb on - strand, within Dshi_0398at 389.386 kb on + strand, within Dshi_0398at 389.410 kb on + strand, within Dshi_0398at 389.416 kb on + strand, within Dshi_0398at 389.453 kb on + strand, within Dshi_0398at 389.453 kb on + strand, within Dshi_0398at 389.458 kb on + strand, within Dshi_0398at 389.546 kb on + strand, within Dshi_0398at 389.549 kb on + strand, within Dshi_0398at 389.549 kb on + strand, within Dshi_0398at 389.569 kb on - strand, within Dshi_0398at 389.575 kb on + strand, within Dshi_0398at 389.605 kb on + strand, within Dshi_0398at 389.613 kb on - strand, within Dshi_0398at 389.613 kb on - strand, within Dshi_0398at 389.622 kb on + strand, within Dshi_0398at 389.622 kb on + strand, within Dshi_0398at 389.622 kb on + strand, within Dshi_0398at 389.630 kb on - strand, within Dshi_0398at 389.632 kb on + strand, within Dshi_0398at 389.650 kb on + strand, within Dshi_0398at 389.668 kb on - strand, within Dshi_0398at 389.698 kb on + strand, within Dshi_0398at 389.706 kb on + strand, within Dshi_0398at 389.706 kb on + strand, within Dshi_0398at 389.714 kb on - strand, within Dshi_0398at 389.714 kb on - strand, within Dshi_0398at 389.725 kb on - strand, within Dshi_0398at 389.782 kb on - strand, within Dshi_0398at 389.787 kb on - strand, within Dshi_0398at 389.812 kb on + strand, within Dshi_0398at 389.813 kb on - strand, within Dshi_0398at 389.869 kb on + strand, within Dshi_0398at 389.869 kb on + strand, within Dshi_0398at 389.878 kb on - strand, within Dshi_0398at 389.884 kb on + strand, within Dshi_0398at 389.900 kb on + strand, within Dshi_0398at 389.939 kb on - strand, within Dshi_0398at 389.947 kb on + strand, within Dshi_0398at 389.957 kb on + strand, within Dshi_0398at 389.964 kb on + strand, within Dshi_0398at 389.972 kb on - strand, within Dshi_0398at 389.972 kb on - strand, within Dshi_0398at 389.975 kb on + strand, within Dshi_0398at 389.985 kb on - strand, within Dshi_0398at 389.985 kb on - strand, within Dshi_0398

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Aluminum chloride 0.5 mM
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386,920 - Dshi_0396 0.47 +0.1
386,936 - Dshi_0396 0.48 -0.2
386,966 - Dshi_0396 0.49 -0.4
386,967 + Dshi_0396 0.49 +0.3
387,011 - Dshi_0396 0.52 +1.5
387,021 - Dshi_0396 0.53 -0.3
387,084 - Dshi_0396 0.56 -0.7
387,155 - Dshi_0396 0.61 +0.1
387,182 - Dshi_0396 0.62 -0.4
387,203 - Dshi_0396 0.64 +1.3
387,203 - Dshi_0396 0.64 +0.2
387,250 - Dshi_0396 0.66 +1.0
387,250 - Dshi_0396 0.66 +0.2
387,250 - Dshi_0396 0.66 -0.4
387,250 - Dshi_0396 0.66 +0.2
387,260 - Dshi_0396 0.67 +0.0
387,274 + Dshi_0396 0.68 -0.3
387,315 + Dshi_0396 0.70 +0.3
387,323 - Dshi_0396 0.71 +0.3
387,373 + Dshi_0396 0.74 -0.5
387,375 - Dshi_0396 0.74 +0.4
387,493 - Dshi_0396 0.81 -1.4
387,520 + Dshi_0396 0.82 +0.9
387,520 - Dshi_0396 0.82 +1.2
387,528 + Dshi_0396 0.83 -0.0
387,531 - Dshi_0396 0.83 +0.3
387,552 - Dshi_0396 0.84 +0.3
387,606 + Dshi_0396 0.88 -0.1
387,612 - Dshi_0396 0.88 -0.3
387,666 + +0.0
387,666 + +1.1
387,666 + +0.3
387,674 - -0.8
387,675 - -0.9
387,706 + +0.5
387,708 - -1.7
387,714 - -1.0
387,784 - +0.1
387,806 - -0.5
387,806 - -0.5
387,812 + +0.2
387,820 - -0.2
387,825 - -0.7
387,826 - +0.1
387,829 + +0.3
387,830 + -0.7
387,831 - -1.9
387,842 - +2.5
387,885 + -0.0
387,893 + -0.3
387,917 - -0.1
387,946 - -1.7
387,986 - +1.5
387,989 + +1.0
387,989 + -0.2
387,996 + -0.0
387,996 - -0.2
388,007 - +0.9
388,009 + -0.2
388,017 - +0.2
388,030 + Dshi_0397 0.11 -0.5
388,030 + Dshi_0397 0.11 +0.5
388,086 + Dshi_0397 0.16 +0.3
388,134 + Dshi_0397 0.21 +1.5
388,134 - Dshi_0397 0.21 -0.4
388,142 - Dshi_0397 0.22 -0.5
388,149 + Dshi_0397 0.22 -0.2
388,199 - Dshi_0397 0.27 +1.0
388,241 - Dshi_0397 0.31 -0.1
388,258 - Dshi_0397 0.32 +0.7
388,299 + Dshi_0397 0.36 +0.3
388,328 - Dshi_0397 0.39 -0.5
388,367 - Dshi_0397 0.42 -0.8
388,403 + Dshi_0397 0.46 -0.3
388,405 + Dshi_0397 0.46 -0.2
388,413 - Dshi_0397 0.47 +0.1
388,451 + Dshi_0397 0.50 +1.5
388,519 + Dshi_0397 0.57 -0.7
388,564 + Dshi_0397 0.61 +0.9
388,630 - Dshi_0397 0.67 -0.3
388,634 + Dshi_0397 0.67 -0.1
388,643 + Dshi_0397 0.68 -0.5
388,670 + Dshi_0397 0.71 +0.7
388,713 - Dshi_0397 0.75 +0.5
388,719 + Dshi_0397 0.75 +1.1
388,788 + Dshi_0397 0.82 -0.3
388,788 + Dshi_0397 0.82 +0.6
388,788 + Dshi_0397 0.82 +0.6
388,796 - Dshi_0397 0.82 +2.1
388,796 - Dshi_0397 0.82 -0.1
388,796 - Dshi_0397 0.82 -0.4
388,796 - Dshi_0397 0.82 +0.0
388,796 - Dshi_0397 0.82 +0.4
388,796 - Dshi_0397 0.82 +0.0
388,808 + Dshi_0397 0.83 -2.9
388,824 + Dshi_0397 0.85 -1.1
388,824 + Dshi_0397 0.85 -0.5
388,824 + Dshi_0397 0.85 +0.4
388,824 + Dshi_0397 0.85 -1.0
388,832 - Dshi_0397 0.86 -0.7
388,857 + Dshi_0397 0.88 +0.9
388,857 + Dshi_0397 0.88 -0.1
388,865 - Dshi_0397 0.89 +0.1
388,878 + Dshi_0397 0.90 +0.1
388,886 - -0.5
388,886 - +1.1
388,886 - -0.2
388,886 - +0.9
388,937 + -1.6
388,938 + -0.1
388,945 - +0.7
388,947 + +0.1
388,979 - -0.9
389,016 + -0.6
389,026 - -0.1
389,037 + -0.0
389,038 - +0.1
389,085 + +1.1
389,140 + +0.3
389,152 - Dshi_0398 0.10 -0.7
389,170 + Dshi_0398 0.11 +0.1
389,178 - Dshi_0398 0.12 +0.7
389,178 - Dshi_0398 0.12 +1.5
389,178 - Dshi_0398 0.12 +0.2
389,178 - Dshi_0398 0.12 -1.1
389,335 + Dshi_0398 0.21 -0.6
389,335 + Dshi_0398 0.21 -0.3
389,335 - Dshi_0398 0.21 -2.2
389,343 - Dshi_0398 0.22 -0.5
389,353 - Dshi_0398 0.22 -0.9
389,370 + Dshi_0398 0.23 +0.6
389,378 + Dshi_0398 0.24 +0.3
389,378 + Dshi_0398 0.24 -0.3
389,378 - Dshi_0398 0.24 -0.1
389,386 + Dshi_0398 0.24 -0.9
389,410 + Dshi_0398 0.26 -0.3
389,416 + Dshi_0398 0.26 -1.0
389,453 + Dshi_0398 0.28 -0.6
389,453 + Dshi_0398 0.28 +0.1
389,458 + Dshi_0398 0.29 +1.5
389,546 + Dshi_0398 0.34 -0.4
389,549 + Dshi_0398 0.34 +0.6
389,549 + Dshi_0398 0.34 +0.3
389,569 - Dshi_0398 0.35 +0.2
389,575 + Dshi_0398 0.35 -0.8
389,605 + Dshi_0398 0.37 -0.0
389,613 - Dshi_0398 0.38 +0.3
389,613 - Dshi_0398 0.38 -0.4
389,622 + Dshi_0398 0.38 -2.0
389,622 + Dshi_0398 0.38 -1.8
389,622 + Dshi_0398 0.38 +2.2
389,630 - Dshi_0398 0.39 -0.9
389,632 + Dshi_0398 0.39 +1.3
389,650 + Dshi_0398 0.40 -0.9
389,668 - Dshi_0398 0.41 +0.5
389,698 + Dshi_0398 0.43 -0.0
389,706 + Dshi_0398 0.43 +0.4
389,706 + Dshi_0398 0.43 -0.5
389,714 - Dshi_0398 0.44 +0.6
389,714 - Dshi_0398 0.44 +0.3
389,725 - Dshi_0398 0.44 +0.5
389,782 - Dshi_0398 0.48 -0.7
389,787 - Dshi_0398 0.48 -0.2
389,812 + Dshi_0398 0.50 +0.3
389,813 - Dshi_0398 0.50 -1.5
389,869 + Dshi_0398 0.53 -0.6
389,869 + Dshi_0398 0.53 +0.9
389,878 - Dshi_0398 0.54 -1.1
389,884 + Dshi_0398 0.54 -0.3
389,900 + Dshi_0398 0.55 -0.3
389,939 - Dshi_0398 0.57 -0.0
389,947 + Dshi_0398 0.58 +0.8
389,957 + Dshi_0398 0.58 -1.0
389,964 + Dshi_0398 0.59 -0.9
389,972 - Dshi_0398 0.59 -0.7
389,972 - Dshi_0398 0.59 -0.7
389,975 + Dshi_0398 0.59 -1.1
389,985 - Dshi_0398 0.60 +0.3
389,985 - Dshi_0398 0.60 +0.9

Or see this region's nucleotide sequence