Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4700

Experiment: LB no stress 48 hours

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4698 and Pf6N2E2_4699 are separated by 100 nucleotidesPf6N2E2_4699 and Pf6N2E2_4700 are separated by 234 nucleotidesPf6N2E2_4700 and Pf6N2E2_4701 are separated by 80 nucleotidesPf6N2E2_4701 and Pf6N2E2_4702 are separated by 15 nucleotides Pf6N2E2_4698 - putative DNA binding protein, at 5,431,205 to 5,431,531 _4698 Pf6N2E2_4699 - FIG00953563: hypothetical protein, at 5,431,632 to 5,432,033 _4699 Pf6N2E2_4700 - Microsomal dipeptidase (EC 3.4.13.19), at 5,432,268 to 5,433,245 _4700 Pf6N2E2_4701 - FIG00953113: hypothetical protein, at 5,433,326 to 5,433,856 _4701 Pf6N2E2_4702 - DgcA Dimethylglycine demethylase subunit A, at 5,433,872 to 5,435,932 _4702 Position (kb) 5432 5433 5434Strain fitness (log2 ratio) -3 -2 -1 0 1at 5431.449 kb on + strand, within Pf6N2E2_4698at 5431.449 kb on + strand, within Pf6N2E2_4698at 5431.449 kb on + strand, within Pf6N2E2_4698at 5431.449 kb on + strand, within Pf6N2E2_4698at 5431.449 kb on + strand, within Pf6N2E2_4698at 5431.449 kb on + strand, within Pf6N2E2_4698at 5431.449 kb on + strand, within Pf6N2E2_4698at 5431.449 kb on + strand, within Pf6N2E2_4698at 5431.449 kb on + strand, within Pf6N2E2_4698at 5431.449 kb on + strand, within Pf6N2E2_4698at 5431.449 kb on + strand, within Pf6N2E2_4698at 5431.450 kb on - strand, within Pf6N2E2_4698at 5431.450 kb on - strand, within Pf6N2E2_4698at 5431.450 kb on - strand, within Pf6N2E2_4698at 5431.450 kb on - strand, within Pf6N2E2_4698at 5431.450 kb on - strand, within Pf6N2E2_4698at 5431.458 kb on + strand, within Pf6N2E2_4698at 5431.511 kb on - strandat 5431.516 kb on + strandat 5431.516 kb on + strandat 5431.516 kb on + strandat 5431.516 kb on + strandat 5431.516 kb on + strandat 5431.516 kb on + strandat 5431.517 kb on - strandat 5431.517 kb on - strandat 5431.517 kb on - strandat 5431.517 kb on - strandat 5431.517 kb on - strandat 5431.517 kb on - strandat 5431.517 kb on - strandat 5431.517 kb on - strandat 5431.517 kb on - strandat 5431.517 kb on - strandat 5431.573 kb on + strandat 5431.576 kb on - strandat 5431.677 kb on + strand, within Pf6N2E2_4699at 5431.678 kb on - strand, within Pf6N2E2_4699at 5431.678 kb on - strand, within Pf6N2E2_4699at 5431.678 kb on - strand, within Pf6N2E2_4699at 5431.711 kb on + strand, within Pf6N2E2_4699at 5431.711 kb on + strand, within Pf6N2E2_4699at 5431.712 kb on - strand, within Pf6N2E2_4699at 5431.712 kb on - strand, within Pf6N2E2_4699at 5431.913 kb on - strand, within Pf6N2E2_4699at 5432.127 kb on + strandat 5432.127 kb on + strandat 5432.127 kb on + strandat 5432.128 kb on - strandat 5432.203 kb on + strandat 5432.203 kb on + strandat 5432.203 kb on + strandat 5432.203 kb on + strandat 5432.203 kb on + strandat 5432.203 kb on + strandat 5432.204 kb on - strandat 5432.204 kb on - strandat 5432.204 kb on - strandat 5432.204 kb on - strandat 5432.204 kb on - strandat 5432.577 kb on + strand, within Pf6N2E2_4700at 5432.625 kb on + strand, within Pf6N2E2_4700at 5432.625 kb on + strand, within Pf6N2E2_4700at 5432.658 kb on + strand, within Pf6N2E2_4700at 5432.659 kb on - strand, within Pf6N2E2_4700at 5432.799 kb on + strand, within Pf6N2E2_4700at 5432.800 kb on - strand, within Pf6N2E2_4700at 5432.968 kb on - strand, within Pf6N2E2_4700at 5433.070 kb on - strand, within Pf6N2E2_4700at 5433.270 kb on + strandat 5433.298 kb on + strandat 5433.352 kb on + strandat 5433.407 kb on + strand, within Pf6N2E2_4701at 5433.407 kb on + strand, within Pf6N2E2_4701at 5433.407 kb on + strand, within Pf6N2E2_4701at 5433.408 kb on - strand, within Pf6N2E2_4701at 5433.473 kb on + strand, within Pf6N2E2_4701at 5433.489 kb on - strand, within Pf6N2E2_4701at 5433.489 kb on - strand, within Pf6N2E2_4701at 5433.575 kb on + strand, within Pf6N2E2_4701at 5433.575 kb on + strand, within Pf6N2E2_4701at 5433.575 kb on + strand, within Pf6N2E2_4701at 5433.575 kb on + strand, within Pf6N2E2_4701at 5433.575 kb on + strand, within Pf6N2E2_4701at 5433.575 kb on + strand, within Pf6N2E2_4701at 5433.576 kb on - strand, within Pf6N2E2_4701at 5433.576 kb on - strand, within Pf6N2E2_4701at 5433.576 kb on - strand, within Pf6N2E2_4701at 5433.576 kb on - strand, within Pf6N2E2_4701at 5433.577 kb on + strand, within Pf6N2E2_4701at 5433.577 kb on + strand, within Pf6N2E2_4701at 5433.578 kb on - strand, within Pf6N2E2_4701at 5433.578 kb on - strand, within Pf6N2E2_4701at 5433.578 kb on - strand, within Pf6N2E2_4701at 5433.578 kb on - strand, within Pf6N2E2_4701at 5433.578 kb on - strand, within Pf6N2E2_4701at 5433.578 kb on - strand, within Pf6N2E2_4701at 5433.578 kb on - strand, within Pf6N2E2_4701at 5433.680 kb on + strand, within Pf6N2E2_4701at 5433.680 kb on + strand, within Pf6N2E2_4701at 5433.680 kb on + strand, within Pf6N2E2_4701at 5433.681 kb on - strand, within Pf6N2E2_4701at 5433.681 kb on - strand, within Pf6N2E2_4701at 5433.681 kb on - strand, within Pf6N2E2_4701at 5433.687 kb on - strand, within Pf6N2E2_4701at 5433.687 kb on - strand, within Pf6N2E2_4701at 5433.713 kb on + strand, within Pf6N2E2_4701at 5433.713 kb on + strand, within Pf6N2E2_4701at 5433.713 kb on + strand, within Pf6N2E2_4701at 5433.713 kb on + strand, within Pf6N2E2_4701at 5433.713 kb on + strand, within Pf6N2E2_4701at 5433.714 kb on - strand, within Pf6N2E2_4701at 5433.714 kb on - strand, within Pf6N2E2_4701at 5433.800 kb on + strand, within Pf6N2E2_4701at 5433.800 kb on + strand, within Pf6N2E2_4701at 5433.854 kb on + strandat 5433.854 kb on + strandat 5433.959 kb on + strandat 5433.959 kb on + strandat 5433.959 kb on + strandat 5433.960 kb on - strandat 5434.001 kb on + strandat 5434.001 kb on + strandat 5434.002 kb on - strandat 5434.002 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB no stress 48 hours
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5,431,449 + Pf6N2E2_4698 0.75 -2.1
5,431,449 + Pf6N2E2_4698 0.75 -0.2
5,431,449 + Pf6N2E2_4698 0.75 -0.4
5,431,449 + Pf6N2E2_4698 0.75 +1.1
5,431,449 + Pf6N2E2_4698 0.75 -0.3
5,431,449 + Pf6N2E2_4698 0.75 -0.3
5,431,449 + Pf6N2E2_4698 0.75 -0.9
5,431,449 + Pf6N2E2_4698 0.75 -1.5
5,431,449 + Pf6N2E2_4698 0.75 -1.1
5,431,449 + Pf6N2E2_4698 0.75 +0.2
5,431,449 + Pf6N2E2_4698 0.75 -0.9
5,431,450 - Pf6N2E2_4698 0.75 +0.2
5,431,450 - Pf6N2E2_4698 0.75 +0.2
5,431,450 - Pf6N2E2_4698 0.75 +0.6
5,431,450 - Pf6N2E2_4698 0.75 +0.2
5,431,450 - Pf6N2E2_4698 0.75 -1.3
5,431,458 + Pf6N2E2_4698 0.77 -0.6
5,431,511 - -2.8
5,431,516 + +0.5
5,431,516 + +0.2
5,431,516 + +0.3
5,431,516 + +0.1
5,431,516 + -0.7
5,431,516 + +0.4
5,431,517 - +0.2
5,431,517 - +0.4
5,431,517 - +0.6
5,431,517 - -0.8
5,431,517 - +1.0
5,431,517 - +0.3
5,431,517 - -0.4
5,431,517 - -1.5
5,431,517 - +0.5
5,431,517 - -0.5
5,431,573 + +0.3
5,431,576 - +0.4
5,431,677 + Pf6N2E2_4699 0.11 -0.2
5,431,678 - Pf6N2E2_4699 0.11 +0.3
5,431,678 - Pf6N2E2_4699 0.11 +1.5
5,431,678 - Pf6N2E2_4699 0.11 +0.1
5,431,711 + Pf6N2E2_4699 0.20 +0.1
5,431,711 + Pf6N2E2_4699 0.20 -0.0
5,431,712 - Pf6N2E2_4699 0.20 -0.0
5,431,712 - Pf6N2E2_4699 0.20 +0.6
5,431,913 - Pf6N2E2_4699 0.70 -0.2
5,432,127 + -0.7
5,432,127 + -0.1
5,432,127 + -0.9
5,432,128 - +0.4
5,432,203 + +0.6
5,432,203 + +0.5
5,432,203 + -0.2
5,432,203 + +0.9
5,432,203 + +0.5
5,432,203 + -0.3
5,432,204 - -0.3
5,432,204 - -0.0
5,432,204 - -0.1
5,432,204 - -1.2
5,432,204 - +0.1
5,432,577 + Pf6N2E2_4700 0.32 -1.3
5,432,625 + Pf6N2E2_4700 0.37 +1.0
5,432,625 + Pf6N2E2_4700 0.37 -0.9
5,432,658 + Pf6N2E2_4700 0.40 -1.4
5,432,659 - Pf6N2E2_4700 0.40 -2.2
5,432,799 + Pf6N2E2_4700 0.54 -0.9
5,432,800 - Pf6N2E2_4700 0.54 -0.9
5,432,968 - Pf6N2E2_4700 0.72 -0.2
5,433,070 - Pf6N2E2_4700 0.82 -0.5
5,433,270 + -0.3
5,433,298 + -0.8
5,433,352 + +0.9
5,433,407 + Pf6N2E2_4701 0.15 -0.8
5,433,407 + Pf6N2E2_4701 0.15 -0.6
5,433,407 + Pf6N2E2_4701 0.15 +0.5
5,433,408 - Pf6N2E2_4701 0.15 +0.6
5,433,473 + Pf6N2E2_4701 0.28 -0.2
5,433,489 - Pf6N2E2_4701 0.31 -0.7
5,433,489 - Pf6N2E2_4701 0.31 -1.4
5,433,575 + Pf6N2E2_4701 0.47 +0.0
5,433,575 + Pf6N2E2_4701 0.47 -1.8
5,433,575 + Pf6N2E2_4701 0.47 -0.4
5,433,575 + Pf6N2E2_4701 0.47 -0.7
5,433,575 + Pf6N2E2_4701 0.47 +0.8
5,433,575 + Pf6N2E2_4701 0.47 -2.1
5,433,576 - Pf6N2E2_4701 0.47 +0.7
5,433,576 - Pf6N2E2_4701 0.47 -0.5
5,433,576 - Pf6N2E2_4701 0.47 -1.4
5,433,576 - Pf6N2E2_4701 0.47 -1.9
5,433,577 + Pf6N2E2_4701 0.47 +0.1
5,433,577 + Pf6N2E2_4701 0.47 +0.8
5,433,578 - Pf6N2E2_4701 0.47 -2.0
5,433,578 - Pf6N2E2_4701 0.47 +0.6
5,433,578 - Pf6N2E2_4701 0.47 +0.8
5,433,578 - Pf6N2E2_4701 0.47 +0.1
5,433,578 - Pf6N2E2_4701 0.47 -1.4
5,433,578 - Pf6N2E2_4701 0.47 -2.0
5,433,578 - Pf6N2E2_4701 0.47 +0.3
5,433,680 + Pf6N2E2_4701 0.67 +0.6
5,433,680 + Pf6N2E2_4701 0.67 -0.4
5,433,680 + Pf6N2E2_4701 0.67 -0.5
5,433,681 - Pf6N2E2_4701 0.67 +0.5
5,433,681 - Pf6N2E2_4701 0.67 -0.2
5,433,681 - Pf6N2E2_4701 0.67 +0.4
5,433,687 - Pf6N2E2_4701 0.68 -0.5
5,433,687 - Pf6N2E2_4701 0.68 -0.5
5,433,713 + Pf6N2E2_4701 0.73 +0.0
5,433,713 + Pf6N2E2_4701 0.73 +0.7
5,433,713 + Pf6N2E2_4701 0.73 -0.3
5,433,713 + Pf6N2E2_4701 0.73 -0.3
5,433,713 + Pf6N2E2_4701 0.73 +0.3
5,433,714 - Pf6N2E2_4701 0.73 -1.5
5,433,714 - Pf6N2E2_4701 0.73 -1.4
5,433,800 + Pf6N2E2_4701 0.89 -0.1
5,433,800 + Pf6N2E2_4701 0.89 +0.9
5,433,854 + -0.3
5,433,854 + +0.4
5,433,959 + -0.9
5,433,959 + +0.3
5,433,959 + +0.8
5,433,960 - -0.3
5,434,001 + -1.9
5,434,001 + -0.2
5,434,002 - -1.1
5,434,002 - -0.3

Or see this region's nucleotide sequence