Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_3864

Experiment: inner cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	inner cut, LB soft agar motility assay
3,968,978	+		Ga0059261_3863	0.25	-0.9
3,968,978	+		Ga0059261_3863	0.25	-1.5
3,968,978	+		Ga0059261_3863	0.25	+5.1
3,968,978	+		Ga0059261_3863	0.25	-1.0
3,968,978	+		Ga0059261_3863	0.25	-0.8
3,968,978	+		Ga0059261_3863	0.25	+0.9
3,968,979	-		Ga0059261_3863	0.25	-2.4
3,968,979	-		Ga0059261_3863	0.25	+1.4
3,968,979	-		Ga0059261_3863	0.25	-2.1
3,969,065	+		Ga0059261_3863	0.32	-1.8
3,969,066	-		Ga0059261_3863	0.33	-0.2
3,969,119	+		Ga0059261_3863	0.37	+1.1
3,969,119	+		Ga0059261_3863	0.37	+2.1
3,969,119	+		Ga0059261_3863	0.37	+0.4
3,969,119	+		Ga0059261_3863	0.37	-1.2
3,969,120	-		Ga0059261_3863	0.37	-2.1
3,969,230	+		Ga0059261_3863	0.47	+1.2
3,969,231	-		Ga0059261_3863	0.47	-0.7
3,969,231	-		Ga0059261_3863	0.47	+0.5
3,969,231	-		Ga0059261_3863	0.47	+0.2
3,969,246	+		Ga0059261_3863	0.48	-0.4
3,969,247	-		Ga0059261_3863	0.48	-0.6
3,969,247	-		Ga0059261_3863	0.48	+0.4
3,969,247	-		Ga0059261_3863	0.48	-2.6
3,969,401	+		Ga0059261_3863	0.61	+0.6
3,969,401	+		Ga0059261_3863	0.61	-0.1
3,969,401	+		Ga0059261_3863	0.61	-1.9
3,969,402	-		Ga0059261_3863	0.61	-2.6
3,969,402	-		Ga0059261_3863	0.61	-0.1
3,969,504	-		Ga0059261_3863	0.70	+1.7
3,969,515	+		Ga0059261_3863	0.71	+0.8
3,969,515	+				+2.2
3,969,515	+		Ga0059261_3863	0.71	+3.6
3,969,515	+		Ga0059261_3863	0.71	-2.1
3,969,515	+		Ga0059261_3863	0.71	+3.0
3,969,515	+		Ga0059261_3863	0.71	+2.3
3,969,515	+		Ga0059261_3863	0.71	-1.4
3,969,515	+		Ga0059261_3863	0.71	+1.7
3,969,515	+		Ga0059261_3863	0.71	-1.3
3,969,516	-		Ga0059261_3863	0.71	+1.6
3,969,516	-		Ga0059261_3863	0.71	-1.1
3,969,516	-		Ga0059261_3863	0.71	+2.7
3,969,516	-		Ga0059261_3863	0.71	+1.7
3,969,516	-		Ga0059261_3863	0.71	+1.1
3,969,516	-		Ga0059261_3863	0.71	+0.5
3,969,524	+		Ga0059261_3863	0.72	-0.6
3,969,524	+		Ga0059261_3863	0.72	-0.1
3,969,524	+		Ga0059261_3863	0.72	-2.1
3,969,596	+		Ga0059261_3863	0.78	-0.9
3,969,596	+		Ga0059261_3863	0.78	-1.3
3,969,596	+		Ga0059261_3863	0.78	-0.0
3,969,596	+				-0.1
3,969,597	-		Ga0059261_3863	0.78	+0.8
3,969,686	+		Ga0059261_3863	0.85	+0.3
3,969,686	+		Ga0059261_3863	0.85	-0.1
3,969,686	+		Ga0059261_3863	0.85	-1.7
3,969,687	-		Ga0059261_3863	0.86	+2.8
3,969,687	-		Ga0059261_3863	0.86	-1.4
3,969,812	+				-0.2
3,969,812	+				-0.4
3,969,812	+				-0.1
3,969,813	-				+0.6
3,969,940	+				-2.8
3,969,940	+				-0.8
3,969,940	+				+1.5
3,969,940	+				-2.9
3,969,952	+				-1.1
3,969,952	+				+0.3
3,969,952	+				-1.9
3,969,953	-				+0.7
3,969,953	-				+2.2
3,970,017	+		Ga0059261_3864	0.14	-1.6
3,970,018	-		Ga0059261_3864	0.15	-1.4
3,970,170	+		Ga0059261_3864	0.28	+1.9
3,970,170	+		Ga0059261_3864	0.28	+0.2
3,970,170	+		Ga0059261_3864	0.28	+2.5
3,970,171	-		Ga0059261_3864	0.28	+0.7
3,970,171	-		Ga0059261_3864	0.28	+1.6
3,970,171	-		Ga0059261_3864	0.28	-1.4
3,970,171	-		Ga0059261_3864	0.28	-1.3
3,970,202	+		Ga0059261_3864	0.31	-0.3
3,970,203	-		Ga0059261_3864	0.31	-1.2
3,970,204	+		Ga0059261_3864	0.31	+1.0
3,970,204	+		Ga0059261_3864	0.31	-0.1
3,970,204	+		Ga0059261_3864	0.31	-1.0
3,970,204	+		Ga0059261_3864	0.31	-1.8
3,970,204	+		Ga0059261_3864	0.31	+1.8
3,970,204	+		Ga0059261_3864	0.31	+0.5
3,970,204	+		Ga0059261_3864	0.31	-0.8
3,970,205	-		Ga0059261_3864	0.31	-0.3
3,970,205	-		Ga0059261_3864	0.31	-2.6
3,970,205	-		Ga0059261_3864	0.31	-0.1
3,970,205	-		Ga0059261_3864	0.31	+1.2
3,970,205	-		Ga0059261_3864	0.31	+0.4
3,970,219	+		Ga0059261_3864	0.32	-0.8
3,970,220	-		Ga0059261_3864	0.32	-2.1
3,970,220	-		Ga0059261_3864	0.32	-1.4
3,970,220	-		Ga0059261_3864	0.32	+0.7
3,970,220	-		Ga0059261_3864	0.32	+0.6
3,970,375	+		Ga0059261_3864	0.46	-0.0
3,970,375	+		Ga0059261_3864	0.46	-1.6
3,970,376	-		Ga0059261_3864	0.46	-1.2
3,970,552	+		Ga0059261_3864	0.61	-1.3
3,970,552	+		Ga0059261_3864	0.61	-1.3
3,970,553	-		Ga0059261_3864	0.62	+1.1
3,970,553	-		Ga0059261_3864	0.62	-0.4
3,970,553	-		Ga0059261_3864	0.62	-1.1
3,970,553	-		Ga0059261_3864	0.62	-1.0
3,970,553	-		Ga0059261_3864	0.62	+0.1
3,970,586	-		Ga0059261_3864	0.64	+2.4
3,970,605	+		Ga0059261_3864	0.66	+0.4
3,970,605	+		Ga0059261_3864	0.66	-1.5
3,970,606	-		Ga0059261_3864	0.66	-1.3
3,970,709	+		Ga0059261_3864	0.75	-2.0
3,970,709	+		Ga0059261_3864	0.75	-0.6
3,970,710	-		Ga0059261_3864	0.75	+3.7
3,970,710	-		Ga0059261_3864	0.75	-0.4
3,970,710	-		Ga0059261_3864	0.75	+0.8
3,970,710	-		Ga0059261_3864	0.75	-1.5
3,970,912	+				-1.1
3,970,912	+				+0.6
3,970,913	-				-1.5
3,970,987	+				-0.1
3,970,988	-				+0.9
3,970,988	-				+1.8
3,971,237	+				+0.0
3,971,238	-				-2.0
3,971,238	-				-1.7
3,971,238	-				+0.6
3,971,285	+		Ga0059261_3865	0.11	-1.8
3,971,286	-		Ga0059261_3865	0.11	+0.7
3,971,286	-		Ga0059261_3865	0.11	-1.0
3,971,286	-		Ga0059261_3865	0.11	-0.6
3,971,286	-		Ga0059261_3865	0.11	-1.5
3,971,286	-		Ga0059261_3865	0.11	-1.7
3,971,286	-				+3.2
3,971,366	+		Ga0059261_3865	0.16	+0.2
3,971,366	+		Ga0059261_3865	0.16	+2.5
3,971,366	+		Ga0059261_3865	0.16	-1.6
3,971,435	+		Ga0059261_3865	0.21	-0.1
3,971,435	+		Ga0059261_3865	0.21	-1.0
3,971,435	+		Ga0059261_3865	0.21	-2.4
3,971,435	+		Ga0059261_3865	0.21	-0.4
3,971,435	+		Ga0059261_3865	0.21	+3.1
3,971,435	+		Ga0059261_3865	0.21	-0.4
3,971,435	+		Ga0059261_3865	0.21	-1.1
3,971,436	-		Ga0059261_3865	0.21	+1.2
3,971,436	-		Ga0059261_3865	0.21	+1.7
3,971,436	-		Ga0059261_3865	0.21	-0.7
3,971,436	-		Ga0059261_3865	0.21	+0.6
3,971,436	-		Ga0059261_3865	0.21	+0.2
3,971,436	-		Ga0059261_3865	0.21	+0.8
3,971,717	+		Ga0059261_3865	0.41	-1.8
3,971,717	+		Ga0059261_3865	0.41	-0.4
3,971,722	+		Ga0059261_3865	0.42	-2.5
3,971,722	+		Ga0059261_3865	0.42	-0.6
3,971,722	+		Ga0059261_3865	0.42	-0.9
3,971,723	-		Ga0059261_3865	0.42	+0.2
3,971,723	-		Ga0059261_3865	0.42	-0.5
3,971,922	-		Ga0059261_3865	0.56	+0.1