Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1969

Experiment: inner cut, LB soft agar motility assay

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	inner cut, LB soft agar motility assay
2,074,374	+		Ga0059261_1967	0.77	-0.4
2,074,374	+		Ga0059261_1967	0.77	-1.5
2,074,374	+		Ga0059261_1967	0.77	+2.4
2,074,375	-		Ga0059261_1967	0.77	-2.9
2,074,375	-		Ga0059261_1967	0.77	-0.8
2,074,375	-		Ga0059261_1967	0.77	-0.9
2,074,375	-		Ga0059261_1967	0.77	+0.8
2,074,375	-		Ga0059261_1967	0.77	-2.0
2,074,375	-		Ga0059261_1967	0.77	+1.4
2,074,375	-		Ga0059261_1967	0.77	-0.4
2,074,375	-		Ga0059261_1967	0.77	-1.3
2,074,484	+				-0.6
2,074,484	+				+0.7
2,074,484	+				+3.0
2,074,485	-				+1.9
2,074,522	+				+2.4
2,074,522	+				+0.6
2,074,522	+				-1.1
2,074,522	+				+0.2
2,074,522	+				-0.5
2,074,522	+				+0.2
2,074,522	+				+1.1
2,074,522	+				+0.7
2,074,522	+				-2.1
2,074,522	+				+0.4
2,074,522	+				-1.4
2,074,523	-				+0.7
2,074,523	-				-1.3
2,074,523	-				-0.9
2,074,523	-				+2.5
2,074,523	-				-0.3
2,074,523	-				-0.4
2,074,523	-				-1.1
2,074,523	-				+0.7
2,074,523	-				-1.9
2,074,523	-				+2.4
2,074,523	-				+2.6
2,074,523	-				+1.4
2,074,523	-				+2.3
2,074,620	+		Ga0059261_1968	0.14	+1.7
2,074,621	-		Ga0059261_1968	0.14	-1.0
2,074,621	-		Ga0059261_1968	0.14	+0.2
2,074,831	-		Ga0059261_1968	0.42	+0.3
2,074,885	+		Ga0059261_1968	0.49	+0.1
2,074,886	-		Ga0059261_1968	0.49	-2.1
2,074,886	-		Ga0059261_1968	0.49	-3.7
2,074,886	-		Ga0059261_1968	0.49	+0.9
2,074,964	-		Ga0059261_1968	0.60	-1.8
2,074,964	-		Ga0059261_1968	0.60	-1.7
2,074,965	+		Ga0059261_1968	0.60	-2.0
2,074,965	+		Ga0059261_1968	0.60	-1.9
2,074,965	+		Ga0059261_1968	0.60	-2.0
2,074,965	+				+3.4
2,074,966	-				+3.4
2,074,966	-		Ga0059261_1968	0.60	+2.1
2,074,966	-		Ga0059261_1968	0.60	-1.0
2,074,966	-		Ga0059261_1968	0.60	-1.7
2,074,966	-		Ga0059261_1968	0.60	-1.9
2,074,966	-		Ga0059261_1968	0.60	+0.3
2,074,966	-		Ga0059261_1968	0.60	+0.4
2,074,966	-		Ga0059261_1968	0.60	-1.0
2,074,966	-		Ga0059261_1968	0.60	+1.4
2,074,966	-		Ga0059261_1968	0.60	-0.5
2,074,966	-		Ga0059261_1968	0.60	+1.9
2,075,072	+		Ga0059261_1968	0.74	-0.1
2,075,102	+				+4.2
2,075,102	+		Ga0059261_1968	0.78	+2.8
2,075,102	+		Ga0059261_1968	0.78	-2.4
2,075,102	+		Ga0059261_1968	0.78	-0.3
2,075,102	+		Ga0059261_1968	0.78	-3.2
2,075,102	+				+2.4
2,075,102	+		Ga0059261_1968	0.78	+2.2
2,075,102	+		Ga0059261_1968	0.78	+0.9
2,075,102	+		Ga0059261_1968	0.78	+0.0
2,075,102	+		Ga0059261_1968	0.78	+0.4
2,075,103	-		Ga0059261_1968	0.78	-2.1
2,075,103	-		Ga0059261_1968	0.78	-1.6
2,075,103	-		Ga0059261_1968	0.78	-1.8
2,075,103	-		Ga0059261_1968	0.78	-1.4
2,075,103	-		Ga0059261_1968	0.78	+2.9
2,075,279	+				-0.6
2,075,279	+				+1.8
2,075,280	-				-2.2
2,075,343	+				+1.1
2,075,344	-				-2.1
2,075,400	+				-0.1
2,075,400	+				+1.1
2,075,400	+				+1.9
2,075,401	-				-0.6
2,075,401	-				+0.8
2,075,652	+		Ga0059261_1969	0.25	-0.4
2,075,652	+		Ga0059261_1969	0.25	+1.4
2,075,652	+		Ga0059261_1969	0.25	-1.1
2,075,653	-		Ga0059261_1969	0.25	+2.0
2,075,653	-		Ga0059261_1969	0.25	+1.1
2,075,808	+		Ga0059261_1969	0.35	-0.9
2,075,809	-		Ga0059261_1969	0.36	-0.9
2,075,811	+		Ga0059261_1969	0.36	-2.5
2,075,811	+		Ga0059261_1969	0.36	+0.4
2,075,811	+		Ga0059261_1969	0.36	-1.8
2,075,811	+		Ga0059261_1969	0.36	-0.8
2,075,811	+		Ga0059261_1969	0.36	-0.8
2,075,812	-		Ga0059261_1969	0.36	+0.3
2,075,812	-		Ga0059261_1969	0.36	+0.2
2,075,812	-		Ga0059261_1969	0.36	+1.4
2,075,812	-		Ga0059261_1969	0.36	+2.8
2,075,812	-		Ga0059261_1969	0.36	-0.8
2,075,812	-		Ga0059261_1969	0.36	-2.0
2,075,812	-		Ga0059261_1969	0.36	-2.5
2,075,812	-		Ga0059261_1969	0.36	-0.6
2,076,589	+				-0.7
2,076,590	-				-1.7
2,076,590	-				-0.9
2,076,634	+				-1.4
2,076,634	+				-2.4
2,076,634	+				-1.3
2,076,635	-				+2.8
2,076,782	-				-0.5
2,076,782	-				-1.3
2,076,782	-				-1.5
2,076,794	-				+0.0
2,076,794	-				+2.0
2,076,794	-				-2.3
2,076,794	-				+0.1
2,076,831	+				+1.6
2,076,831	+				-1.1
2,076,832	-				-0.1
2,076,840	+				-2.2
2,076,840	+				-1.3
2,076,841	-				+5.2
2,076,841	-				-1.3
2,076,841	-				-1.7
2,076,875	+				+2.9
2,076,875	+				-1.2
2,076,875	+				+0.2
2,076,875	+				-1.3
2,076,875	+				-0.6
2,076,875	+				-0.7
2,076,875	+				+1.1
2,076,875	+				-1.8
2,076,876	-				-2.0
2,076,876	-				+0.2
2,076,876	-				+3.9
2,076,876	-				-0.7
2,076,876	-				+2.1
2,076,876	-				+3.2
2,076,876	-				-0.1
2,076,876	-				+0.0
2,076,919	+		Ga0059261_1970	0.31	-1.3
2,076,919	+		Ga0059261_1970	0.31	-2.0
2,076,919	+		Ga0059261_1970	0.31	+0.4
2,076,919	+		Ga0059261_1970	0.31	-0.9
2,076,919	+		Ga0059261_1970	0.31	+0.2
2,076,919	+		Ga0059261_1970	0.31	-0.7
2,076,919	+		Ga0059261_1970	0.31	+0.2
2,076,919	+		Ga0059261_1970	0.31	+0.3
2,076,919	+		Ga0059261_1970	0.31	+1.3
2,076,919	+		Ga0059261_1970	0.31	-0.1
2,076,919	+				+2.4
2,076,919	+		Ga0059261_1970	0.31	-1.6
2,076,919	+		Ga0059261_1970	0.31	-0.3
2,076,919	+		Ga0059261_1970	0.31	+0.4
2,076,919	+		Ga0059261_1970	0.31	-1.5
2,076,919	+		Ga0059261_1970	0.31	-1.1
2,076,919	+		Ga0059261_1970	0.31	-0.6
2,076,920	-		Ga0059261_1970	0.32	-1.3
2,076,920	-		Ga0059261_1970	0.32	+1.7
2,076,920	-		Ga0059261_1970	0.32	-0.7
2,076,920	-		Ga0059261_1970	0.32	-1.1
2,076,920	-		Ga0059261_1970	0.32	+2.1
2,076,920	-		Ga0059261_1970	0.32	+1.2
2,076,920	-		Ga0059261_1970	0.32	+1.4
2,076,920	-		Ga0059261_1970	0.32	+0.2
2,076,920	-		Ga0059261_1970	0.32	-0.1
2,076,920	-		Ga0059261_1970	0.32	+1.2
2,076,920	-		Ga0059261_1970	0.32	-0.7
2,076,920	-		Ga0059261_1970	0.32	-0.8
2,076,920	-		Ga0059261_1970	0.32	+0.8
2,076,920	-		Ga0059261_1970	0.32	-0.7
2,077,104	+				-1.6
2,077,104	+				+4.4
2,077,104	+				-1.9
2,077,105	-				+0.7
2,077,105	-				-0.1
2,077,105	-				+2.4
2,077,105	-				+1.0
2,077,322	+		Ga0059261_1971	0.28	+0.2
2,077,322	+		Ga0059261_1971	0.28	-0.8
2,077,323	-		Ga0059261_1971	0.28	-2.4
2,077,323	-		Ga0059261_1971	0.28	+0.6
2,077,323	-		Ga0059261_1971	0.28	+1.0
2,077,425	-		Ga0059261_1971	0.37	-1.2
2,077,454	+		Ga0059261_1971	0.40	-2.3
2,077,454	+		Ga0059261_1971	0.40	-0.1
2,077,454	+				+1.4
2,077,455	-		Ga0059261_1971	0.40	+0.3
2,077,455	-		Ga0059261_1971	0.40	-0.1
2,077,691	+		Ga0059261_1971	0.61	-0.1
2,077,692	-		Ga0059261_1971	0.61	-0.0
2,077,715	+		Ga0059261_1971	0.63	-0.2
2,077,715	+		Ga0059261_1971	0.63	+1.4
2,077,715	+		Ga0059261_1971	0.63	-1.7
2,077,716	-		Ga0059261_1971	0.63	-1.0
2,077,716	-		Ga0059261_1971	0.63	-0.2
2,077,716	-		Ga0059261_1971	0.63	+2.0
2,077,716	-		Ga0059261_1971	0.63	-0.6