Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1773

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1772 and Ga0059261_1773 are separated by 191 nucleotidesGa0059261_1773 and Ga0059261_1774 are separated by 737 nucleotides Ga0059261_1772: Ga0059261_1772 - MobA/MobL family, at 1,877,686 to 1,879,497 _1772 Ga0059261_1773: Ga0059261_1773 - ParB-like nuclease domain, at 1,879,689 to 1,880,726 _1773 Ga0059261_1774: Ga0059261_1774 - hypothetical protein, at 1,881,464 to 1,881,982 _1774 Position (kb) 1879 1880 1881Strain fitness (log2 ratio) -2 -1 0 1 2at 1878.928 kb on - strandat 1881.450 kb on + strandat 1881.450 kb on + strandat 1881.450 kb on + strandat 1881.488 kb on + strandat 1881.488 kb on + strandat 1881.488 kb on + strandat 1881.489 kb on - strandat 1881.489 kb on - strandat 1881.489 kb on - strandat 1881.489 kb on - strandat 1881.546 kb on - strand, within Ga0059261_1774at 1881.546 kb on - strand, within Ga0059261_1774

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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1,878,928 - -0.2
1,881,450 + -2.0
1,881,450 + -2.0
1,881,450 + +1.0
1,881,488 + +2.5
1,881,488 + +0.9
1,881,488 + +1.7
1,881,489 - -0.5
1,881,489 - -0.4
1,881,489 - +0.9
1,881,489 - +1.0
1,881,546 - Ga0059261_1774 0.16 +0.4
1,881,546 - Ga0059261_1774 0.16 +0.0

Or see this region's nucleotide sequence