Experiment: inner cut, LB soft agar motility assay
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ga0059261_0636 and Ga0059261_0637 are separated by 36 nucleotides Ga0059261_0637 and Ga0059261_0638 are separated by 81 nucleotides
Ga0059261_0636: Ga0059261_0636 - valyl-tRNA synthetase (EC 6.1.1.9), at 676,599 to 679,388
_0636
Ga0059261_0637: Ga0059261_0637 - Protein of unknown function (DUF2497), at 679,425 to 679,886
_0637
Ga0059261_0638: Ga0059261_0638 - type I secretion outer membrane protein, TolC family, at 679,968 to 681,488
_0638
Position (kb) 679
680 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 679.872 kb on - strand at 679.902 kb on + strand at 679.962 kb on + strand at 679.969 kb on + strand at 679.969 kb on + strand at 679.969 kb on + strand at 679.970 kb on - strand at 679.970 kb on - strand at 679.972 kb on + strand at 679.972 kb on + strand at 679.973 kb on - strand at 679.973 kb on - strand at 679.973 kb on - strand at 679.973 kb on - strand at 680.101 kb on + strand at 680.101 kb on + strand at 680.102 kb on - strand at 680.102 kb on - strand at 680.120 kb on - strand, within Ga0059261_0638 at 680.197 kb on + strand, within Ga0059261_0638 at 680.197 kb on + strand, within Ga0059261_0638 at 680.198 kb on - strand, within Ga0059261_0638 at 680.198 kb on - strand, within Ga0059261_0638 at 680.198 kb on - strand, within Ga0059261_0638 at 680.198 kb on - strand, within Ga0059261_0638 at 680.264 kb on + strand at 680.313 kb on + strand, within Ga0059261_0638 at 680.313 kb on + strand, within Ga0059261_0638 at 680.313 kb on + strand, within Ga0059261_0638 at 680.313 kb on + strand, within Ga0059261_0638 at 680.313 kb on + strand, within Ga0059261_0638 at 680.314 kb on - strand, within Ga0059261_0638 at 680.386 kb on + strand, within Ga0059261_0638 at 680.386 kb on + strand, within Ga0059261_0638 at 680.386 kb on + strand, within Ga0059261_0638 at 680.386 kb on + strand, within Ga0059261_0638 at 680.387 kb on - strand, within Ga0059261_0638 at 680.387 kb on - strand, within Ga0059261_0638 at 680.599 kb on + strand, within Ga0059261_0638 at 680.599 kb on + strand, within Ga0059261_0638 at 680.599 kb on + strand, within Ga0059261_0638 at 680.599 kb on + strand, within Ga0059261_0638 at 680.599 kb on + strand, within Ga0059261_0638 at 680.600 kb on - strand, within Ga0059261_0638 at 680.600 kb on - strand, within Ga0059261_0638 at 680.600 kb on - strand, within Ga0059261_0638 at 680.600 kb on - strand, within Ga0059261_0638 at 680.600 kb on - strand, within Ga0059261_0638 at 680.602 kb on + strand, within Ga0059261_0638 at 680.602 kb on + strand, within Ga0059261_0638 at 680.602 kb on + strand, within Ga0059261_0638 at 680.602 kb on + strand, within Ga0059261_0638 at 680.603 kb on - strand, within Ga0059261_0638 at 680.665 kb on + strand, within Ga0059261_0638 at 680.666 kb on - strand, within Ga0059261_0638 at 680.666 kb on - strand, within Ga0059261_0638 at 680.666 kb on - strand, within Ga0059261_0638 at 680.712 kb on - strand, within Ga0059261_0638 at 680.712 kb on - strand, within Ga0059261_0638 at 680.815 kb on + strand, within Ga0059261_0638 at 680.815 kb on + strand, within Ga0059261_0638 at 680.816 kb on - strand, within Ga0059261_0638 at 680.816 kb on - strand at 680.816 kb on - strand, within Ga0059261_0638 at 680.816 kb on - strand, within Ga0059261_0638 at 680.816 kb on - strand, within Ga0059261_0638 at 680.816 kb on - strand, within Ga0059261_0638 at 680.816 kb on - strand, within Ga0059261_0638
Per-strain Table
Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay remove 679,872 - +1.9 679,902 + -0.5 679,962 + -0.5 679,969 + -1.5 679,969 + -2.1 679,969 + -1.5 679,970 - +1.2 679,970 - +0.9 679,972 + +1.3 679,972 + -0.9 679,973 - +2.2 679,973 - -1.7 679,973 - -0.3 679,973 - -0.6 680,101 + +1.2 680,101 + -0.7 680,102 - -1.3 680,102 - +0.2 680,120 - Ga0059261_0638 0.10 -0.4 680,197 + Ga0059261_0638 0.15 -1.4 680,197 + Ga0059261_0638 0.15 -2.0 680,198 - Ga0059261_0638 0.15 +1.9 680,198 - Ga0059261_0638 0.15 -1.5 680,198 - Ga0059261_0638 0.15 -2.1 680,198 - Ga0059261_0638 0.15 -0.3 680,264 + +1.2 680,313 + Ga0059261_0638 0.23 +2.3 680,313 + Ga0059261_0638 0.23 -0.1 680,313 + Ga0059261_0638 0.23 -1.8 680,313 + Ga0059261_0638 0.23 +3.0 680,313 + Ga0059261_0638 0.23 -1.3 680,314 - Ga0059261_0638 0.23 +1.0 680,386 + Ga0059261_0638 0.27 -0.3 680,386 + Ga0059261_0638 0.27 -3.4 680,386 + Ga0059261_0638 0.27 -0.5 680,386 + Ga0059261_0638 0.27 -0.0 680,387 - Ga0059261_0638 0.28 -0.5 680,387 - Ga0059261_0638 0.28 +0.5 680,599 + Ga0059261_0638 0.41 +2.1 680,599 + Ga0059261_0638 0.41 -0.5 680,599 + Ga0059261_0638 0.41 -2.7 680,599 + Ga0059261_0638 0.41 +0.3 680,599 + Ga0059261_0638 0.41 +1.4 680,600 - Ga0059261_0638 0.42 -1.0 680,600 - Ga0059261_0638 0.42 -3.7 680,600 - Ga0059261_0638 0.42 -0.8 680,600 - Ga0059261_0638 0.42 +0.5 680,600 - Ga0059261_0638 0.42 -0.9 680,602 + Ga0059261_0638 0.42 +1.3 680,602 + Ga0059261_0638 0.42 +3.8 680,602 + Ga0059261_0638 0.42 -2.2 680,602 + Ga0059261_0638 0.42 -0.8 680,603 - Ga0059261_0638 0.42 -0.1 680,665 + Ga0059261_0638 0.46 +0.8 680,666 - Ga0059261_0638 0.46 -1.2 680,666 - Ga0059261_0638 0.46 +0.9 680,666 - Ga0059261_0638 0.46 +1.5 680,712 - Ga0059261_0638 0.49 +0.9 680,712 - Ga0059261_0638 0.49 +1.0 680,815 + Ga0059261_0638 0.56 -0.5 680,815 + Ga0059261_0638 0.56 -1.5 680,816 - Ga0059261_0638 0.56 -1.3 680,816 - +1.2 680,816 - Ga0059261_0638 0.56 -0.7 680,816 - Ga0059261_0638 0.56 -0.8 680,816 - Ga0059261_0638 0.56 +0.1 680,816 - Ga0059261_0638 0.56 -2.5 680,816 - Ga0059261_0638 0.56 -1.2
Or see this region's nucleotide sequence