Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0589

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_0588 and Ga0059261_0589 overlap by 1 nucleotidesGa0059261_0589 and Ga0059261_0590 are separated by 47 nucleotides Ga0059261_0588: Ga0059261_0588 - UDP-galactopyranose mutase (EC 5.4.99.9), at 617,734 to 619,146 _0588 Ga0059261_0589: Ga0059261_0589 - Glycosyltransferase, at 619,146 to 620,366 _0589 Ga0059261_0590: Ga0059261_0590 - Selenocysteine lyase, at 620,414 to 621,685 _0590 Position (kb) 619 620 621Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 618.175 kb on + strand, within Ga0059261_0588at 618.175 kb on + strand, within Ga0059261_0588at 618.176 kb on - strand, within Ga0059261_0588at 618.176 kb on - strand, within Ga0059261_0588at 618.194 kb on - strand, within Ga0059261_0588at 618.194 kb on - strand, within Ga0059261_0588at 618.339 kb on + strand, within Ga0059261_0588at 618.339 kb on + strand, within Ga0059261_0588at 618.339 kb on + strand, within Ga0059261_0588at 618.339 kb on + strand, within Ga0059261_0588at 618.339 kb on + strand, within Ga0059261_0588at 618.339 kb on + strand, within Ga0059261_0588at 618.339 kb on + strand, within Ga0059261_0588at 618.340 kb on - strand, within Ga0059261_0588at 618.340 kb on - strand, within Ga0059261_0588at 618.340 kb on - strand, within Ga0059261_0588at 618.340 kb on - strand, within Ga0059261_0588at 618.340 kb on - strand, within Ga0059261_0588at 618.340 kb on - strand, within Ga0059261_0588at 618.340 kb on - strand, within Ga0059261_0588at 618.340 kb on - strand, within Ga0059261_0588at 618.340 kb on - strand, within Ga0059261_0588at 618.381 kb on + strand, within Ga0059261_0588at 618.382 kb on - strand, within Ga0059261_0588at 618.619 kb on + strand, within Ga0059261_0588at 618.619 kb on + strand, within Ga0059261_0588at 618.620 kb on - strand, within Ga0059261_0588at 618.620 kb on - strand, within Ga0059261_0588at 618.620 kb on - strand, within Ga0059261_0588at 618.620 kb on - strand, within Ga0059261_0588at 618.706 kb on + strandat 618.706 kb on + strand, within Ga0059261_0588at 618.706 kb on + strand, within Ga0059261_0588at 618.958 kb on + strandat 618.958 kb on + strand, within Ga0059261_0588at 618.958 kb on + strand, within Ga0059261_0588at 618.958 kb on + strand, within Ga0059261_0588at 618.958 kb on + strand, within Ga0059261_0588at 618.958 kb on + strand, within Ga0059261_0588at 618.959 kb on - strand, within Ga0059261_0588at 618.959 kb on - strand, within Ga0059261_0588at 618.959 kb on - strand, within Ga0059261_0588at 618.959 kb on - strand, within Ga0059261_0588at 618.959 kb on - strand, within Ga0059261_0588at 618.959 kb on - strand, within Ga0059261_0588at 618.976 kb on + strand, within Ga0059261_0588at 619.105 kb on + strandat 619.106 kb on - strandat 619.106 kb on - strandat 619.106 kb on - strandat 619.106 kb on - strandat 619.360 kb on + strand, within Ga0059261_0589at 619.360 kb on + strand, within Ga0059261_0589at 619.360 kb on + strand, within Ga0059261_0589at 619.360 kb on + strand, within Ga0059261_0589at 619.360 kb on + strand, within Ga0059261_0589at 619.360 kb on + strand, within Ga0059261_0589at 619.360 kb on + strand, within Ga0059261_0589at 619.361 kb on - strand, within Ga0059261_0589at 619.361 kb on - strand, within Ga0059261_0589at 619.361 kb on - strand, within Ga0059261_0589at 619.377 kb on + strand, within Ga0059261_0589at 619.422 kb on + strand, within Ga0059261_0589at 619.422 kb on + strand, within Ga0059261_0589at 619.422 kb on + strand, within Ga0059261_0589at 619.423 kb on - strand, within Ga0059261_0589at 619.423 kb on - strand, within Ga0059261_0589at 619.424 kb on + strand, within Ga0059261_0589at 619.425 kb on - strand, within Ga0059261_0589at 619.443 kb on + strand, within Ga0059261_0589at 619.443 kb on + strand, within Ga0059261_0589at 619.443 kb on + strand, within Ga0059261_0589at 619.443 kb on + strand, within Ga0059261_0589at 619.443 kb on + strand, within Ga0059261_0589at 619.443 kb on + strand, within Ga0059261_0589at 619.444 kb on - strand, within Ga0059261_0589at 619.444 kb on - strand, within Ga0059261_0589at 619.444 kb on - strand, within Ga0059261_0589at 619.444 kb on - strand, within Ga0059261_0589at 619.444 kb on - strand, within Ga0059261_0589at 619.484 kb on + strand, within Ga0059261_0589at 619.484 kb on + strand, within Ga0059261_0589at 619.496 kb on + strand, within Ga0059261_0589at 619.497 kb on - strand, within Ga0059261_0589at 619.497 kb on - strand, within Ga0059261_0589at 619.509 kb on + strand, within Ga0059261_0589at 619.509 kb on + strand, within Ga0059261_0589at 619.510 kb on - strand, within Ga0059261_0589at 619.600 kb on + strand, within Ga0059261_0589at 619.600 kb on + strand, within Ga0059261_0589at 619.668 kb on + strand, within Ga0059261_0589at 619.668 kb on + strand, within Ga0059261_0589at 619.668 kb on + strand, within Ga0059261_0589at 619.669 kb on - strand, within Ga0059261_0589at 619.718 kb on + strand, within Ga0059261_0589at 619.718 kb on + strand, within Ga0059261_0589at 619.718 kb on + strand, within Ga0059261_0589at 619.718 kb on + strand, within Ga0059261_0589at 619.718 kb on + strand, within Ga0059261_0589at 619.719 kb on - strand, within Ga0059261_0589at 619.719 kb on - strand, within Ga0059261_0589at 619.719 kb on - strand, within Ga0059261_0589at 619.920 kb on + strand, within Ga0059261_0589at 619.964 kb on + strand, within Ga0059261_0589at 619.964 kb on + strand, within Ga0059261_0589at 619.964 kb on + strand, within Ga0059261_0589at 619.964 kb on + strand, within Ga0059261_0589at 619.965 kb on - strand, within Ga0059261_0589at 619.965 kb on - strand, within Ga0059261_0589at 619.965 kb on - strand, within Ga0059261_0589at 619.965 kb on - strand, within Ga0059261_0589at 619.965 kb on - strand, within Ga0059261_0589at 619.971 kb on + strand, within Ga0059261_0589at 619.971 kb on + strand, within Ga0059261_0589at 619.971 kb on + strand, within Ga0059261_0589at 619.972 kb on - strand, within Ga0059261_0589at 619.972 kb on - strand, within Ga0059261_0589at 619.972 kb on - strand, within Ga0059261_0589at 619.972 kb on - strand, within Ga0059261_0589at 619.972 kb on - strand, within Ga0059261_0589at 619.972 kb on - strand, within Ga0059261_0589at 619.972 kb on - strand, within Ga0059261_0589at 619.972 kb on - strand, within Ga0059261_0589at 620.214 kb on + strand, within Ga0059261_0589at 620.214 kb on + strand, within Ga0059261_0589at 620.214 kb on + strand, within Ga0059261_0589at 620.214 kb on + strand, within Ga0059261_0589at 620.214 kb on + strand, within Ga0059261_0589at 620.215 kb on - strand, within Ga0059261_0589at 620.215 kb on - strand, within Ga0059261_0589at 620.215 kb on - strandat 620.215 kb on - strand, within Ga0059261_0589at 620.215 kb on - strand, within Ga0059261_0589at 620.215 kb on - strand, within Ga0059261_0589at 620.224 kb on + strand, within Ga0059261_0589at 620.224 kb on + strand, within Ga0059261_0589at 620.348 kb on + strandat 620.348 kb on + strandat 620.348 kb on + strandat 620.349 kb on - strandat 620.349 kb on - strandat 620.349 kb on - strandat 620.350 kb on + strandat 620.350 kb on + strandat 620.350 kb on + strandat 620.350 kb on + strandat 620.350 kb on + strandat 620.350 kb on + strandat 620.350 kb on + strandat 620.351 kb on - strandat 620.351 kb on - strandat 620.351 kb on - strandat 620.351 kb on - strandat 620.351 kb on - strandat 620.351 kb on - strandat 620.351 kb on - strandat 620.351 kb on - strandat 620.364 kb on + strandat 620.365 kb on - strandat 620.644 kb on + strand, within Ga0059261_0590at 620.797 kb on + strand, within Ga0059261_0590at 620.798 kb on - strand, within Ga0059261_0590at 620.798 kb on - strand, within Ga0059261_0590at 620.798 kb on - strand, within Ga0059261_0590at 620.844 kb on - strand, within Ga0059261_0590at 620.844 kb on - strand, within Ga0059261_0590at 620.885 kb on + strandat 620.886 kb on - strand, within Ga0059261_0590at 620.886 kb on - strand, within Ga0059261_0590at 620.912 kb on - strand, within Ga0059261_0590at 620.912 kb on - strand, within Ga0059261_0590at 621.162 kb on + strand, within Ga0059261_0590at 621.162 kb on + strand, within Ga0059261_0590at 621.162 kb on + strand, within Ga0059261_0590at 621.162 kb on + strand, within Ga0059261_0590at 621.162 kb on + strand, within Ga0059261_0590at 621.162 kb on + strand, within Ga0059261_0590at 621.162 kb on + strand, within Ga0059261_0590at 621.162 kb on + strand, within Ga0059261_0590at 621.162 kb on + strand, within Ga0059261_0590at 621.162 kb on + strand, within Ga0059261_0590at 621.162 kb on + strand, within Ga0059261_0590at 621.163 kb on - strand, within Ga0059261_0590at 621.163 kb on - strand, within Ga0059261_0590at 621.163 kb on - strand, within Ga0059261_0590at 621.270 kb on + strand, within Ga0059261_0590at 621.270 kb on + strand, within Ga0059261_0590at 621.270 kb on + strand, within Ga0059261_0590at 621.270 kb on + strand, within Ga0059261_0590at 621.270 kb on + strand, within Ga0059261_0590at 621.270 kb on + strand, within Ga0059261_0590at 621.270 kb on + strand, within Ga0059261_0590at 621.271 kb on - strand, within Ga0059261_0590at 621.271 kb on - strand, within Ga0059261_0590at 621.271 kb on - strand, within Ga0059261_0590at 621.271 kb on - strand, within Ga0059261_0590at 621.286 kb on - strand, within Ga0059261_0590at 621.286 kb on - strand, within Ga0059261_0590at 621.286 kb on - strand, within Ga0059261_0590at 621.286 kb on - strand, within Ga0059261_0590at 621.286 kb on - strand, within Ga0059261_0590at 621.286 kb on - strandat 621.286 kb on - strand, within Ga0059261_0590at 621.317 kb on - strand, within Ga0059261_0590at 621.318 kb on + strand, within Ga0059261_0590at 621.318 kb on + strand, within Ga0059261_0590at 621.319 kb on - strand, within Ga0059261_0590at 621.319 kb on - strand, within Ga0059261_0590at 621.319 kb on - strand, within Ga0059261_0590

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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618,175 + Ga0059261_0588 0.31 -0.6
618,175 + Ga0059261_0588 0.31 +2.4
618,176 - Ga0059261_0588 0.31 -0.0
618,176 - Ga0059261_0588 0.31 -0.1
618,194 - Ga0059261_0588 0.33 +0.4
618,194 - Ga0059261_0588 0.33 +0.2
618,339 + Ga0059261_0588 0.43 -0.4
618,339 + Ga0059261_0588 0.43 +1.5
618,339 + Ga0059261_0588 0.43 +0.8
618,339 + Ga0059261_0588 0.43 +0.2
618,339 + Ga0059261_0588 0.43 -0.8
618,339 + Ga0059261_0588 0.43 +2.5
618,339 + Ga0059261_0588 0.43 +0.6
618,340 - Ga0059261_0588 0.43 -0.1
618,340 - Ga0059261_0588 0.43 +2.4
618,340 - Ga0059261_0588 0.43 -0.7
618,340 - Ga0059261_0588 0.43 -2.5
618,340 - Ga0059261_0588 0.43 -0.7
618,340 - Ga0059261_0588 0.43 -0.1
618,340 - Ga0059261_0588 0.43 +1.1
618,340 - Ga0059261_0588 0.43 +1.2
618,340 - Ga0059261_0588 0.43 +0.0
618,381 + Ga0059261_0588 0.46 +0.4
618,382 - Ga0059261_0588 0.46 -0.8
618,619 + Ga0059261_0588 0.63 -1.8
618,619 + Ga0059261_0588 0.63 -0.3
618,620 - Ga0059261_0588 0.63 +2.1
618,620 - Ga0059261_0588 0.63 -1.6
618,620 - Ga0059261_0588 0.63 -0.9
618,620 - Ga0059261_0588 0.63 +1.8
618,706 + +0.2
618,706 + Ga0059261_0588 0.69 -0.4
618,706 + Ga0059261_0588 0.69 +2.3
618,958 + +0.2
618,958 + Ga0059261_0588 0.87 -1.0
618,958 + Ga0059261_0588 0.87 -3.4
618,958 + Ga0059261_0588 0.87 -1.3
618,958 + Ga0059261_0588 0.87 -2.4
618,958 + Ga0059261_0588 0.87 +1.8
618,959 - Ga0059261_0588 0.87 +1.0
618,959 - Ga0059261_0588 0.87 +0.9
618,959 - Ga0059261_0588 0.87 -0.4
618,959 - Ga0059261_0588 0.87 -0.8
618,959 - Ga0059261_0588 0.87 -0.9
618,959 - Ga0059261_0588 0.87 -0.8
618,976 + Ga0059261_0588 0.88 -0.7
619,105 + -1.1
619,106 - +0.1
619,106 - -0.6
619,106 - -0.9
619,106 - -0.3
619,360 + Ga0059261_0589 0.18 -0.1
619,360 + Ga0059261_0589 0.18 +0.2
619,360 + Ga0059261_0589 0.18 -2.1
619,360 + Ga0059261_0589 0.18 -0.6
619,360 + Ga0059261_0589 0.18 +0.4
619,360 + Ga0059261_0589 0.18 -0.6
619,360 + Ga0059261_0589 0.18 -1.0
619,361 - Ga0059261_0589 0.18 -0.4
619,361 - Ga0059261_0589 0.18 -0.2
619,361 - Ga0059261_0589 0.18 -1.9
619,377 + Ga0059261_0589 0.19 -0.2
619,422 + Ga0059261_0589 0.23 -0.6
619,422 + Ga0059261_0589 0.23 -1.4
619,422 + Ga0059261_0589 0.23 -0.2
619,423 - Ga0059261_0589 0.23 +1.8
619,423 - Ga0059261_0589 0.23 -1.5
619,424 + Ga0059261_0589 0.23 -1.9
619,425 - Ga0059261_0589 0.23 -0.1
619,443 + Ga0059261_0589 0.24 +1.9
619,443 + Ga0059261_0589 0.24 -0.7
619,443 + Ga0059261_0589 0.24 +0.1
619,443 + Ga0059261_0589 0.24 +0.7
619,443 + Ga0059261_0589 0.24 +0.7
619,443 + Ga0059261_0589 0.24 +1.8
619,444 - Ga0059261_0589 0.24 -0.0
619,444 - Ga0059261_0589 0.24 -2.1
619,444 - Ga0059261_0589 0.24 -0.3
619,444 - Ga0059261_0589 0.24 -1.7
619,444 - Ga0059261_0589 0.24 -0.4
619,484 + Ga0059261_0589 0.28 +0.4
619,484 + Ga0059261_0589 0.28 -0.8
619,496 + Ga0059261_0589 0.29 -0.3
619,497 - Ga0059261_0589 0.29 -1.9
619,497 - Ga0059261_0589 0.29 -0.6
619,509 + Ga0059261_0589 0.30 -0.0
619,509 + Ga0059261_0589 0.30 +4.0
619,510 - Ga0059261_0589 0.30 +0.3
619,600 + Ga0059261_0589 0.37 -1.1
619,600 + Ga0059261_0589 0.37 +0.0
619,668 + Ga0059261_0589 0.43 -2.0
619,668 + Ga0059261_0589 0.43 -1.3
619,668 + Ga0059261_0589 0.43 -2.0
619,669 - Ga0059261_0589 0.43 +0.8
619,718 + Ga0059261_0589 0.47 +0.4
619,718 + Ga0059261_0589 0.47 -1.1
619,718 + Ga0059261_0589 0.47 +0.8
619,718 + Ga0059261_0589 0.47 -0.1
619,718 + Ga0059261_0589 0.47 -0.1
619,719 - Ga0059261_0589 0.47 -0.0
619,719 - Ga0059261_0589 0.47 -1.8
619,719 - Ga0059261_0589 0.47 -0.1
619,920 + Ga0059261_0589 0.63 +0.2
619,964 + Ga0059261_0589 0.67 +0.6
619,964 + Ga0059261_0589 0.67 +2.8
619,964 + Ga0059261_0589 0.67 -1.1
619,964 + Ga0059261_0589 0.67 -2.1
619,965 - Ga0059261_0589 0.67 -0.5
619,965 - Ga0059261_0589 0.67 -0.1
619,965 - Ga0059261_0589 0.67 -1.2
619,965 - Ga0059261_0589 0.67 +0.2
619,965 - Ga0059261_0589 0.67 +1.8
619,971 + Ga0059261_0589 0.68 +0.0
619,971 + Ga0059261_0589 0.68 -1.7
619,971 + Ga0059261_0589 0.68 -2.2
619,972 - Ga0059261_0589 0.68 +0.5
619,972 - Ga0059261_0589 0.68 +0.0
619,972 - Ga0059261_0589 0.68 -1.6
619,972 - Ga0059261_0589 0.68 -0.8
619,972 - Ga0059261_0589 0.68 +0.1
619,972 - Ga0059261_0589 0.68 +1.7
619,972 - Ga0059261_0589 0.68 -0.5
619,972 - Ga0059261_0589 0.68 -1.3
620,214 + Ga0059261_0589 0.87 +0.7
620,214 + Ga0059261_0589 0.87 -0.5
620,214 + Ga0059261_0589 0.87 -0.2
620,214 + Ga0059261_0589 0.87 -0.7
620,214 + Ga0059261_0589 0.87 -0.6
620,215 - Ga0059261_0589 0.88 -0.5
620,215 - Ga0059261_0589 0.88 -1.0
620,215 - +0.6
620,215 - Ga0059261_0589 0.88 -2.5
620,215 - Ga0059261_0589 0.88 -0.4
620,215 - Ga0059261_0589 0.88 -1.3
620,224 + Ga0059261_0589 0.88 +2.0
620,224 + Ga0059261_0589 0.88 +4.1
620,348 + +2.2
620,348 + +0.2
620,348 + +0.6
620,349 - +0.2
620,349 - +0.6
620,349 - -0.1
620,350 + -1.9
620,350 + -0.9
620,350 + -1.1
620,350 + +3.2
620,350 + -0.8
620,350 + -0.1
620,350 + +0.0
620,351 - -0.4
620,351 - +0.2
620,351 - -0.6
620,351 - -0.2
620,351 - -2.9
620,351 - -1.0
620,351 - +0.9
620,351 - +2.3
620,364 + +5.2
620,365 - -0.4
620,644 + Ga0059261_0590 0.18 +2.5
620,797 + Ga0059261_0590 0.30 -0.9
620,798 - Ga0059261_0590 0.30 -0.0
620,798 - Ga0059261_0590 0.30 -2.1
620,798 - Ga0059261_0590 0.30 -2.1
620,844 - Ga0059261_0590 0.34 -0.4
620,844 - Ga0059261_0590 0.34 -0.5
620,885 + +1.2
620,886 - Ga0059261_0590 0.37 -1.6
620,886 - Ga0059261_0590 0.37 -0.3
620,912 - Ga0059261_0590 0.39 +0.5
620,912 - Ga0059261_0590 0.39 +1.4
621,162 + Ga0059261_0590 0.59 -1.3
621,162 + Ga0059261_0590 0.59 +0.5
621,162 + Ga0059261_0590 0.59 -0.2
621,162 + Ga0059261_0590 0.59 -0.1
621,162 + Ga0059261_0590 0.59 -0.6
621,162 + Ga0059261_0590 0.59 -1.3
621,162 + Ga0059261_0590 0.59 +0.5
621,162 + Ga0059261_0590 0.59 +1.6
621,162 + Ga0059261_0590 0.59 -0.4
621,162 + Ga0059261_0590 0.59 -2.8
621,162 + Ga0059261_0590 0.59 -0.3
621,163 - Ga0059261_0590 0.59 -1.6
621,163 - Ga0059261_0590 0.59 -0.1
621,163 - Ga0059261_0590 0.59 -0.9
621,270 + Ga0059261_0590 0.67 -0.6
621,270 + Ga0059261_0590 0.67 -0.8
621,270 + Ga0059261_0590 0.67 -0.6
621,270 + Ga0059261_0590 0.67 -2.5
621,270 + Ga0059261_0590 0.67 +2.7
621,270 + Ga0059261_0590 0.67 -0.4
621,270 + Ga0059261_0590 0.67 +1.4
621,271 - Ga0059261_0590 0.67 +0.2
621,271 - Ga0059261_0590 0.67 -0.5
621,271 - Ga0059261_0590 0.67 -0.2
621,271 - Ga0059261_0590 0.67 -1.3
621,286 - Ga0059261_0590 0.69 -2.8
621,286 - Ga0059261_0590 0.69 -1.3
621,286 - Ga0059261_0590 0.69 -0.9
621,286 - Ga0059261_0590 0.69 -0.5
621,286 - Ga0059261_0590 0.69 +1.6
621,286 - +3.2
621,286 - Ga0059261_0590 0.69 +0.9
621,317 - Ga0059261_0590 0.71 -0.4
621,318 + Ga0059261_0590 0.71 -2.3
621,318 + Ga0059261_0590 0.71 +0.6
621,319 - Ga0059261_0590 0.71 -2.5
621,319 - Ga0059261_0590 0.71 -0.8
621,319 - Ga0059261_0590 0.71 +2.3

Or see this region's nucleotide sequence