Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19140

Experiment: LB_Anaerobic_180MIN_ZN16A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_19130 and CSW01_19135 are separated by 115 nucleotidesCSW01_19135 and CSW01_19140 are separated by 96 nucleotidesCSW01_19140 and CSW01_19145 are separated by 255 nucleotides CSW01_19130: CSW01_19130 - FAA hydrolase family protein, at 955,390 to 956,004 _19130 CSW01_19135: CSW01_19135 - MarR family transcriptional regulator, at 956,120 to 956,578 _19135 CSW01_19140: CSW01_19140 - organic hydroperoxide resistance protein, at 956,675 to 957,112 _19140 CSW01_19145: CSW01_19145 - porin, at 957,368 to 958,363 _19145 Position (kb) 956 957 958Strain fitness (log2 ratio) -2 -1 0 1 2at 955.682 kb on - strand, within CSW01_19130at 955.723 kb on - strand, within CSW01_19130at 955.723 kb on - strand, within CSW01_19130at 955.732 kb on + strand, within CSW01_19130at 955.733 kb on - strand, within CSW01_19130at 955.735 kb on - strand, within CSW01_19130at 955.815 kb on - strand, within CSW01_19130at 955.852 kb on - strand, within CSW01_19130at 955.868 kb on + strand, within CSW01_19130at 955.868 kb on + strand, within CSW01_19130at 955.876 kb on - strand, within CSW01_19130at 955.917 kb on - strand, within CSW01_19130at 955.942 kb on - strand, within CSW01_19130at 956.000 kb on - strandat 956.011 kb on + strandat 956.019 kb on - strandat 956.173 kb on + strand, within CSW01_19135at 956.181 kb on - strand, within CSW01_19135at 956.181 kb on - strand, within CSW01_19135at 956.181 kb on - strand, within CSW01_19135at 956.220 kb on - strand, within CSW01_19135at 956.220 kb on - strand, within CSW01_19135at 956.222 kb on + strand, within CSW01_19135at 956.222 kb on + strand, within CSW01_19135at 956.225 kb on - strand, within CSW01_19135at 956.261 kb on - strand, within CSW01_19135at 956.419 kb on + strand, within CSW01_19135at 956.472 kb on + strand, within CSW01_19135at 956.472 kb on + strand, within CSW01_19135at 956.503 kb on + strand, within CSW01_19135at 956.503 kb on - strand, within CSW01_19135at 956.506 kb on - strand, within CSW01_19135at 956.574 kb on + strandat 956.582 kb on - strandat 956.582 kb on - strandat 956.729 kb on + strand, within CSW01_19140at 956.729 kb on - strand, within CSW01_19140at 956.731 kb on + strand, within CSW01_19140at 956.742 kb on - strand, within CSW01_19140at 956.742 kb on - strand, within CSW01_19140at 956.743 kb on + strand, within CSW01_19140at 956.806 kb on - strand, within CSW01_19140at 956.828 kb on - strand, within CSW01_19140at 956.844 kb on + strand, within CSW01_19140at 956.850 kb on - strand, within CSW01_19140at 956.948 kb on + strand, within CSW01_19140at 956.978 kb on - strand, within CSW01_19140at 956.978 kb on - strand, within CSW01_19140at 957.035 kb on - strand, within CSW01_19140at 957.035 kb on - strand, within CSW01_19140at 957.040 kb on + strand, within CSW01_19140at 957.040 kb on + strand, within CSW01_19140at 957.045 kb on + strand, within CSW01_19140at 957.048 kb on - strand, within CSW01_19140at 957.060 kb on - strand, within CSW01_19140at 957.072 kb on + strandat 957.075 kb on - strandat 957.088 kb on - strandat 957.098 kb on + strandat 957.099 kb on + strandat 957.099 kb on + strandat 957.214 kb on - strandat 957.319 kb on - strandat 957.416 kb on + strandat 957.424 kb on - strandat 957.430 kb on - strandat 957.485 kb on - strand, within CSW01_19145at 957.516 kb on - strand, within CSW01_19145at 957.531 kb on + strand, within CSW01_19145at 957.618 kb on + strand, within CSW01_19145at 957.729 kb on - strand, within CSW01_19145at 957.803 kb on + strand, within CSW01_19145at 957.803 kb on + strand, within CSW01_19145at 957.803 kb on + strand, within CSW01_19145at 957.803 kb on + strand, within CSW01_19145at 957.811 kb on - strand, within CSW01_19145at 957.813 kb on + strand, within CSW01_19145at 957.821 kb on - strand, within CSW01_19145at 957.851 kb on + strand, within CSW01_19145at 957.918 kb on + strand, within CSW01_19145at 957.918 kb on + strand, within CSW01_19145at 957.936 kb on - strand, within CSW01_19145at 957.965 kb on + strand, within CSW01_19145at 957.978 kb on - strand, within CSW01_19145at 957.996 kb on + strand, within CSW01_19145at 957.997 kb on + strand, within CSW01_19145at 958.033 kb on + strand, within CSW01_19145at 958.033 kb on + strand, within CSW01_19145at 958.041 kb on - strand, within CSW01_19145at 958.041 kb on - strand, within CSW01_19145at 958.041 kb on - strand, within CSW01_19145at 958.080 kb on - strand, within CSW01_19145

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
remove
955,682 - CSW01_19130 0.47 -2.1
955,723 - CSW01_19130 0.54 +0.5
955,723 - CSW01_19130 0.54 +0.1
955,732 + CSW01_19130 0.56 +0.7
955,733 - CSW01_19130 0.56 -0.1
955,735 - CSW01_19130 0.56 +0.4
955,815 - CSW01_19130 0.69 -0.0
955,852 - CSW01_19130 0.75 -0.2
955,868 + CSW01_19130 0.78 +1.7
955,868 + CSW01_19130 0.78 -1.0
955,876 - CSW01_19130 0.79 +0.8
955,917 - CSW01_19130 0.86 -0.4
955,942 - CSW01_19130 0.90 -2.2
956,000 - +0.5
956,011 + -0.6
956,019 - -0.0
956,173 + CSW01_19135 0.12 +0.2
956,181 - CSW01_19135 0.13 -0.7
956,181 - CSW01_19135 0.13 -0.2
956,181 - CSW01_19135 0.13 +0.3
956,220 - CSW01_19135 0.22 -0.2
956,220 - CSW01_19135 0.22 -0.7
956,222 + CSW01_19135 0.22 -0.6
956,222 + CSW01_19135 0.22 +0.1
956,225 - CSW01_19135 0.23 +0.3
956,261 - CSW01_19135 0.31 +0.1
956,419 + CSW01_19135 0.65 +0.3
956,472 + CSW01_19135 0.77 +0.3
956,472 + CSW01_19135 0.77 +0.1
956,503 + CSW01_19135 0.83 +0.0
956,503 - CSW01_19135 0.83 -0.4
956,506 - CSW01_19135 0.84 -0.1
956,574 + +0.5
956,582 - +0.7
956,582 - +2.0
956,729 + CSW01_19140 0.12 +1.2
956,729 - CSW01_19140 0.12 -0.3
956,731 + CSW01_19140 0.13 -0.7
956,742 - CSW01_19140 0.15 -0.0
956,742 - CSW01_19140 0.15 -0.3
956,743 + CSW01_19140 0.16 -0.1
956,806 - CSW01_19140 0.30 +0.7
956,828 - CSW01_19140 0.35 +0.1
956,844 + CSW01_19140 0.39 -1.5
956,850 - CSW01_19140 0.40 -1.4
956,948 + CSW01_19140 0.62 -0.7
956,978 - CSW01_19140 0.69 -0.9
956,978 - CSW01_19140 0.69 -0.3
957,035 - CSW01_19140 0.82 -1.9
957,035 - CSW01_19140 0.82 +0.5
957,040 + CSW01_19140 0.83 +1.6
957,040 + CSW01_19140 0.83 -0.3
957,045 + CSW01_19140 0.84 -1.5
957,048 - CSW01_19140 0.85 -0.7
957,060 - CSW01_19140 0.88 -0.6
957,072 + -0.3
957,075 - +0.4
957,088 - +0.1
957,098 + -0.3
957,099 + +1.0
957,099 + +0.4
957,214 - +0.6
957,319 - +0.6
957,416 + -0.1
957,424 - -2.7
957,430 - +1.1
957,485 - CSW01_19145 0.12 -0.9
957,516 - CSW01_19145 0.15 -1.0
957,531 + CSW01_19145 0.16 +0.4
957,618 + CSW01_19145 0.25 -2.5
957,729 - CSW01_19145 0.36 +0.1
957,803 + CSW01_19145 0.44 +1.8
957,803 + CSW01_19145 0.44 -0.3
957,803 + CSW01_19145 0.44 -1.9
957,803 + CSW01_19145 0.44 +0.8
957,811 - CSW01_19145 0.44 -0.6
957,813 + CSW01_19145 0.45 +0.1
957,821 - CSW01_19145 0.45 -1.6
957,851 + CSW01_19145 0.48 -0.3
957,918 + CSW01_19145 0.55 +0.5
957,918 + CSW01_19145 0.55 -0.4
957,936 - CSW01_19145 0.57 -0.8
957,965 + CSW01_19145 0.60 +0.7
957,978 - CSW01_19145 0.61 -0.1
957,996 + CSW01_19145 0.63 -0.2
957,997 + CSW01_19145 0.63 +0.0
958,033 + CSW01_19145 0.67 +0.3
958,033 + CSW01_19145 0.67 -0.2
958,041 - CSW01_19145 0.68 -0.5
958,041 - CSW01_19145 0.68 +0.4
958,041 - CSW01_19145 0.68 -0.1
958,080 - CSW01_19145 0.71 +0.3

Or see this region's nucleotide sequence