Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18930

Experiment: LB_Anaerobic_180MIN_ZN16A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18925 and CSW01_18930 are separated by 341 nucleotidesCSW01_18930 and CSW01_18935 are separated by 286 nucleotides CSW01_18925: CSW01_18925 - sensor domain-containing diguanylate cyclase, at 906,669 to 908,042 _18925 CSW01_18930: CSW01_18930 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 908,384 to 908,992 _18930 CSW01_18935: CSW01_18935 - DUF3541 domain-containing protein, at 909,279 to 910,487 _18935 Position (kb) 908 909Strain fitness (log2 ratio) -2 -1 0 1 2at 907.442 kb on + strand, within CSW01_18925at 907.442 kb on + strand, within CSW01_18925at 907.497 kb on + strand, within CSW01_18925at 907.505 kb on - strand, within CSW01_18925at 907.524 kb on - strand, within CSW01_18925at 907.575 kb on - strand, within CSW01_18925at 907.646 kb on + strand, within CSW01_18925at 907.754 kb on + strand, within CSW01_18925at 907.806 kb on - strand, within CSW01_18925at 907.846 kb on + strand, within CSW01_18925at 907.918 kb on + strandat 907.986 kb on + strandat 908.015 kb on + strandat 908.045 kb on - strandat 908.093 kb on - strandat 908.205 kb on + strandat 908.237 kb on + strandat 908.245 kb on - strandat 908.252 kb on - strandat 908.269 kb on + strandat 908.295 kb on - strandat 908.610 kb on + strand, within CSW01_18930at 908.618 kb on - strand, within CSW01_18930at 908.620 kb on + strand, within CSW01_18930at 908.620 kb on + strand, within CSW01_18930at 908.630 kb on + strand, within CSW01_18930at 908.703 kb on - strand, within CSW01_18930at 908.729 kb on + strand, within CSW01_18930at 908.737 kb on - strand, within CSW01_18930at 908.737 kb on - strand, within CSW01_18930at 908.758 kb on - strand, within CSW01_18930at 908.802 kb on + strand, within CSW01_18930at 908.810 kb on - strand, within CSW01_18930at 908.810 kb on - strand, within CSW01_18930at 908.906 kb on + strand, within CSW01_18930at 908.924 kb on - strand, within CSW01_18930at 909.076 kb on + strandat 909.082 kb on + strandat 909.090 kb on - strandat 909.193 kb on + strandat 909.198 kb on + strandat 909.201 kb on - strandat 909.201 kb on - strandat 909.201 kb on - strandat 909.214 kb on - strandat 909.216 kb on + strandat 909.307 kb on + strandat 909.412 kb on - strand, within CSW01_18935at 909.423 kb on + strand, within CSW01_18935at 909.431 kb on - strand, within CSW01_18935at 909.448 kb on + strand, within CSW01_18935at 909.522 kb on - strand, within CSW01_18935at 909.552 kb on - strand, within CSW01_18935at 909.552 kb on - strand, within CSW01_18935at 909.552 kb on - strand, within CSW01_18935at 909.632 kb on + strand, within CSW01_18935at 909.648 kb on + strand, within CSW01_18935at 909.653 kb on + strand, within CSW01_18935at 909.658 kb on + strand, within CSW01_18935at 909.661 kb on - strand, within CSW01_18935at 909.712 kb on + strand, within CSW01_18935at 909.712 kb on + strand, within CSW01_18935at 909.793 kb on + strand, within CSW01_18935at 909.801 kb on - strand, within CSW01_18935at 909.801 kb on - strand, within CSW01_18935at 909.871 kb on + strand, within CSW01_18935at 909.879 kb on - strand, within CSW01_18935at 909.887 kb on - strand, within CSW01_18935at 909.910 kb on - strand, within CSW01_18935at 909.992 kb on - strand, within CSW01_18935

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
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907,442 + CSW01_18925 0.56 +0.8
907,442 + CSW01_18925 0.56 -0.9
907,497 + CSW01_18925 0.60 -0.7
907,505 - CSW01_18925 0.61 -1.3
907,524 - CSW01_18925 0.62 +0.3
907,575 - CSW01_18925 0.66 +1.8
907,646 + CSW01_18925 0.71 +0.4
907,754 + CSW01_18925 0.79 -0.5
907,806 - CSW01_18925 0.83 +0.7
907,846 + CSW01_18925 0.86 +0.6
907,918 + -0.1
907,986 + +0.1
908,015 + -0.9
908,045 - +0.6
908,093 - -0.2
908,205 + +1.1
908,237 + -1.0
908,245 - +0.5
908,252 - -0.8
908,269 + -0.3
908,295 - +0.5
908,610 + CSW01_18930 0.37 +0.2
908,618 - CSW01_18930 0.38 +0.2
908,620 + CSW01_18930 0.39 +0.0
908,620 + CSW01_18930 0.39 -0.2
908,630 + CSW01_18930 0.40 -0.3
908,703 - CSW01_18930 0.52 -0.1
908,729 + CSW01_18930 0.57 -0.4
908,737 - CSW01_18930 0.58 -0.1
908,737 - CSW01_18930 0.58 -0.4
908,758 - CSW01_18930 0.61 +0.1
908,802 + CSW01_18930 0.69 -0.1
908,810 - CSW01_18930 0.70 -0.1
908,810 - CSW01_18930 0.70 -0.7
908,906 + CSW01_18930 0.86 -0.4
908,924 - CSW01_18930 0.89 -1.1
909,076 + -1.9
909,082 + -0.3
909,090 - -0.0
909,193 + -0.6
909,198 + +0.1
909,201 - +1.8
909,201 - +0.4
909,201 - +0.4
909,214 - +0.3
909,216 + +0.3
909,307 + +1.0
909,412 - CSW01_18935 0.11 -0.5
909,423 + CSW01_18935 0.12 +0.9
909,431 - CSW01_18935 0.13 +0.6
909,448 + CSW01_18935 0.14 +0.4
909,522 - CSW01_18935 0.20 +0.3
909,552 - CSW01_18935 0.23 -0.4
909,552 - CSW01_18935 0.23 -0.1
909,552 - CSW01_18935 0.23 -0.3
909,632 + CSW01_18935 0.29 +0.5
909,648 + CSW01_18935 0.31 -1.0
909,653 + CSW01_18935 0.31 +1.7
909,658 + CSW01_18935 0.31 +1.5
909,661 - CSW01_18935 0.32 -1.0
909,712 + CSW01_18935 0.36 -0.1
909,712 + CSW01_18935 0.36 +0.8
909,793 + CSW01_18935 0.43 +2.3
909,801 - CSW01_18935 0.43 +0.0
909,801 - CSW01_18935 0.43 +1.7
909,871 + CSW01_18935 0.49 -0.2
909,879 - CSW01_18935 0.50 -0.2
909,887 - CSW01_18935 0.50 +1.1
909,910 - CSW01_18935 0.52 -0.4
909,992 - CSW01_18935 0.59 -0.7

Or see this region's nucleotide sequence