Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18565

Experiment: LB_Anaerobic_180MIN_ZN16A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18555 and CSW01_18560 are separated by 177 nucleotidesCSW01_18560 and CSW01_18565 overlap by 20 nucleotidesCSW01_18565 and CSW01_18570 are separated by 2 nucleotides CSW01_18555: CSW01_18555 - hypothetical protein, at 835,633 to 835,728 _18555 CSW01_18560: CSW01_18560 - hypothetical protein, at 835,906 to 836,097 _18560 CSW01_18565: CSW01_18565 - L-threonine 3-dehydrogenase, at 836,078 to 837,109 _18565 CSW01_18570: CSW01_18570 - glycine C-acetyltransferase, at 837,112 to 838,305 _18570 Position (kb) 836 837 838Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 835.085 kb on - strandat 835.086 kb on + strandat 835.130 kb on - strandat 835.141 kb on + strandat 835.176 kb on - strandat 835.191 kb on - strandat 835.276 kb on + strandat 835.281 kb on + strandat 835.284 kb on - strandat 835.306 kb on - strandat 835.306 kb on - strandat 835.413 kb on + strandat 835.413 kb on + strandat 835.418 kb on + strandat 835.435 kb on + strandat 835.452 kb on + strandat 835.508 kb on - strandat 835.608 kb on - strandat 835.693 kb on + strand, within CSW01_18555at 835.694 kb on + strand, within CSW01_18555at 835.694 kb on + strand, within CSW01_18555at 835.701 kb on - strand, within CSW01_18555at 835.818 kb on - strandat 835.913 kb on + strandat 836.065 kb on - strand, within CSW01_18560at 836.170 kb on + strandat 836.282 kb on + strand, within CSW01_18565at 836.308 kb on + strand, within CSW01_18565at 836.361 kb on + strand, within CSW01_18565at 836.409 kb on - strand, within CSW01_18565at 836.518 kb on + strand, within CSW01_18565at 836.584 kb on + strand, within CSW01_18565at 836.767 kb on + strand, within CSW01_18565at 836.767 kb on + strand, within CSW01_18565at 836.767 kb on + strand, within CSW01_18565at 836.788 kb on + strand, within CSW01_18565at 836.816 kb on + strand, within CSW01_18565at 836.933 kb on - strand, within CSW01_18565at 836.975 kb on + strand, within CSW01_18565at 837.037 kb on + strandat 837.040 kb on - strandat 837.081 kb on - strandat 837.171 kb on + strandat 837.260 kb on + strand, within CSW01_18570at 837.260 kb on + strand, within CSW01_18570at 837.260 kb on + strand, within CSW01_18570at 837.305 kb on - strand, within CSW01_18570at 837.434 kb on + strand, within CSW01_18570at 837.435 kb on + strand, within CSW01_18570at 837.565 kb on + strand, within CSW01_18570at 837.572 kb on + strand, within CSW01_18570at 837.572 kb on + strand, within CSW01_18570at 837.573 kb on - strand, within CSW01_18570at 837.573 kb on - strand, within CSW01_18570at 837.589 kb on + strand, within CSW01_18570at 837.652 kb on + strand, within CSW01_18570at 837.660 kb on - strand, within CSW01_18570at 837.660 kb on - strand, within CSW01_18570at 837.679 kb on + strand, within CSW01_18570at 837.749 kb on + strand, within CSW01_18570at 837.793 kb on + strand, within CSW01_18570at 837.830 kb on + strand, within CSW01_18570at 837.863 kb on + strand, within CSW01_18570at 837.863 kb on + strand, within CSW01_18570at 837.871 kb on - strand, within CSW01_18570at 837.871 kb on - strand, within CSW01_18570at 837.871 kb on - strand, within CSW01_18570at 837.871 kb on - strand, within CSW01_18570at 837.871 kb on - strand, within CSW01_18570at 837.871 kb on - strand, within CSW01_18570at 837.873 kb on + strand, within CSW01_18570at 837.873 kb on + strand, within CSW01_18570at 837.881 kb on - strand, within CSW01_18570at 837.919 kb on - strand, within CSW01_18570at 837.952 kb on - strand, within CSW01_18570at 838.043 kb on - strand, within CSW01_18570at 838.096 kb on + strand, within CSW01_18570at 838.105 kb on - strand, within CSW01_18570

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
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835,085 - +0.9
835,086 + -0.2
835,130 - +0.0
835,141 + +1.0
835,176 - -0.1
835,191 - +1.4
835,276 + +0.1
835,281 + -0.0
835,284 - -0.8
835,306 - -0.4
835,306 - +0.7
835,413 + +0.0
835,413 + -1.1
835,418 + -0.0
835,435 + -0.5
835,452 + +0.0
835,508 - -0.0
835,608 - -0.8
835,693 + CSW01_18555 0.62 +0.2
835,694 + CSW01_18555 0.64 -0.0
835,694 + CSW01_18555 0.64 +0.9
835,701 - CSW01_18555 0.71 +0.7
835,818 - -0.6
835,913 + +0.8
836,065 - CSW01_18560 0.83 +1.5
836,170 + -0.4
836,282 + CSW01_18565 0.20 +0.2
836,308 + CSW01_18565 0.22 -0.9
836,361 + CSW01_18565 0.27 +1.4
836,409 - CSW01_18565 0.32 +0.4
836,518 + CSW01_18565 0.43 -3.1
836,584 + CSW01_18565 0.49 +2.8
836,767 + CSW01_18565 0.67 -0.5
836,767 + CSW01_18565 0.67 -0.2
836,767 + CSW01_18565 0.67 -0.5
836,788 + CSW01_18565 0.69 -0.8
836,816 + CSW01_18565 0.72 +1.2
836,933 - CSW01_18565 0.83 -0.1
836,975 + CSW01_18565 0.87 -0.3
837,037 + -1.2
837,040 - +0.2
837,081 - -0.9
837,171 + -0.1
837,260 + CSW01_18570 0.12 -0.7
837,260 + CSW01_18570 0.12 +1.3
837,260 + CSW01_18570 0.12 +1.0
837,305 - CSW01_18570 0.16 +0.6
837,434 + CSW01_18570 0.27 -0.8
837,435 + CSW01_18570 0.27 -1.4
837,565 + CSW01_18570 0.38 -0.2
837,572 + CSW01_18570 0.39 +3.5
837,572 + CSW01_18570 0.39 -1.9
837,573 - CSW01_18570 0.39 -1.0
837,573 - CSW01_18570 0.39 +1.1
837,589 + CSW01_18570 0.40 +0.2
837,652 + CSW01_18570 0.45 -0.5
837,660 - CSW01_18570 0.46 -0.4
837,660 - CSW01_18570 0.46 -0.8
837,679 + CSW01_18570 0.47 +0.1
837,749 + CSW01_18570 0.53 -0.1
837,793 + CSW01_18570 0.57 +0.7
837,830 + CSW01_18570 0.60 +0.2
837,863 + CSW01_18570 0.63 -0.6
837,863 + CSW01_18570 0.63 +0.4
837,871 - CSW01_18570 0.64 -0.4
837,871 - CSW01_18570 0.64 -0.2
837,871 - CSW01_18570 0.64 -0.8
837,871 - CSW01_18570 0.64 +1.2
837,871 - CSW01_18570 0.64 -1.0
837,871 - CSW01_18570 0.64 -0.2
837,873 + CSW01_18570 0.64 +0.7
837,873 + CSW01_18570 0.64 -1.1
837,881 - CSW01_18570 0.64 +0.2
837,919 - CSW01_18570 0.68 -0.2
837,952 - CSW01_18570 0.70 -1.8
838,043 - CSW01_18570 0.78 +1.3
838,096 + CSW01_18570 0.82 -0.7
838,105 - CSW01_18570 0.83 -1.1

Or see this region's nucleotide sequence