Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18515

Experiment: LB_Anaerobic_180MIN_ZN16A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18510 and CSW01_18515 are separated by 207 nucleotidesCSW01_18515 and CSW01_18520 are separated by 299 nucleotides CSW01_18510: CSW01_18510 - D-serine dehydratase, at 826,120 to 827,445 _18510 CSW01_18515: CSW01_18515 - DNA-binding transcriptional regulator DsdC, at 827,653 to 828,597 _18515 CSW01_18520: CSW01_18520 - linear amide C-N hydrolase, at 828,897 to 829,973 _18520 Position (kb) 827 828 829Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 826.694 kb on - strand, within CSW01_18510at 826.785 kb on - strand, within CSW01_18510at 826.804 kb on - strand, within CSW01_18510at 826.804 kb on - strand, within CSW01_18510at 826.835 kb on - strand, within CSW01_18510at 826.876 kb on + strand, within CSW01_18510at 826.953 kb on + strand, within CSW01_18510at 826.959 kb on - strand, within CSW01_18510at 826.961 kb on - strand, within CSW01_18510at 827.070 kb on - strand, within CSW01_18510at 827.078 kb on - strand, within CSW01_18510at 827.099 kb on - strand, within CSW01_18510at 827.099 kb on - strand, within CSW01_18510at 827.148 kb on + strand, within CSW01_18510at 827.148 kb on + strand, within CSW01_18510at 827.148 kb on + strand, within CSW01_18510at 827.188 kb on - strand, within CSW01_18510at 827.204 kb on + strand, within CSW01_18510at 827.212 kb on - strand, within CSW01_18510at 827.268 kb on - strand, within CSW01_18510at 827.281 kb on + strand, within CSW01_18510at 827.281 kb on + strand, within CSW01_18510at 827.304 kb on + strand, within CSW01_18510at 827.316 kb on + strandat 827.326 kb on + strandat 827.326 kb on + strandat 827.344 kb on - strandat 827.383 kb on - strandat 827.402 kb on + strandat 827.424 kb on + strandat 827.424 kb on + strandat 827.429 kb on + strandat 827.429 kb on + strandat 827.429 kb on + strandat 827.432 kb on - strandat 827.432 kb on - strandat 827.432 kb on - strandat 827.470 kb on - strandat 827.495 kb on - strandat 827.495 kb on - strandat 827.571 kb on - strandat 827.582 kb on + strandat 827.595 kb on - strandat 827.612 kb on - strandat 827.612 kb on - strandat 827.614 kb on + strandat 827.621 kb on - strandat 827.621 kb on - strandat 827.626 kb on + strandat 827.626 kb on + strandat 827.638 kb on + strandat 827.639 kb on + strandat 827.643 kb on + strandat 827.643 kb on + strandat 827.643 kb on + strandat 827.643 kb on + strandat 827.643 kb on + strandat 827.645 kb on + strandat 827.646 kb on - strandat 827.651 kb on - strandat 827.661 kb on - strandat 827.664 kb on + strandat 827.665 kb on + strandat 827.672 kb on - strandat 827.672 kb on - strandat 827.672 kb on - strandat 827.672 kb on - strandat 827.672 kb on - strandat 827.672 kb on - strandat 827.672 kb on - strandat 827.731 kb on - strandat 827.742 kb on + strandat 827.772 kb on + strand, within CSW01_18515at 827.772 kb on + strand, within CSW01_18515at 827.773 kb on + strand, within CSW01_18515at 827.773 kb on + strand, within CSW01_18515at 827.777 kb on + strand, within CSW01_18515at 827.777 kb on + strand, within CSW01_18515at 827.779 kb on + strand, within CSW01_18515at 827.779 kb on + strand, within CSW01_18515at 827.785 kb on - strand, within CSW01_18515at 827.785 kb on - strand, within CSW01_18515at 827.785 kb on - strand, within CSW01_18515at 827.959 kb on + strand, within CSW01_18515at 827.993 kb on + strand, within CSW01_18515at 828.003 kb on + strand, within CSW01_18515at 828.011 kb on - strand, within CSW01_18515at 828.011 kb on - strand, within CSW01_18515at 828.013 kb on - strand, within CSW01_18515at 828.029 kb on + strand, within CSW01_18515at 828.037 kb on - strand, within CSW01_18515at 828.037 kb on - strand, within CSW01_18515at 828.037 kb on - strand, within CSW01_18515at 828.039 kb on + strand, within CSW01_18515at 828.047 kb on - strand, within CSW01_18515at 828.132 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.194 kb on + strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.202 kb on - strand, within CSW01_18515at 828.234 kb on + strand, within CSW01_18515at 828.241 kb on - strand, within CSW01_18515at 828.248 kb on - strand, within CSW01_18515at 828.249 kb on + strand, within CSW01_18515at 828.249 kb on - strand, within CSW01_18515at 828.251 kb on + strand, within CSW01_18515at 828.251 kb on + strand, within CSW01_18515at 828.259 kb on - strand, within CSW01_18515at 828.261 kb on - strand, within CSW01_18515at 828.311 kb on - strand, within CSW01_18515at 828.315 kb on + strand, within CSW01_18515at 828.320 kb on + strand, within CSW01_18515at 828.361 kb on + strand, within CSW01_18515at 828.429 kb on - strand, within CSW01_18515at 828.452 kb on + strand, within CSW01_18515at 828.458 kb on - strand, within CSW01_18515at 828.471 kb on + strand, within CSW01_18515at 828.473 kb on - strand, within CSW01_18515at 828.477 kb on + strand, within CSW01_18515at 828.477 kb on + strand, within CSW01_18515at 828.477 kb on + strand, within CSW01_18515at 828.477 kb on + strand, within CSW01_18515at 828.477 kb on + strand, within CSW01_18515at 828.477 kb on + strand, within CSW01_18515at 828.477 kb on + strand, within CSW01_18515at 828.485 kb on - strand, within CSW01_18515at 828.485 kb on - strand, within CSW01_18515at 828.485 kb on - strand, within CSW01_18515at 828.485 kb on - strand, within CSW01_18515at 828.485 kb on - strand, within CSW01_18515at 828.681 kb on - strandat 828.683 kb on + strandat 828.683 kb on + strandat 828.691 kb on + strandat 828.691 kb on - strandat 828.691 kb on - strandat 828.693 kb on + strandat 828.693 kb on + strandat 828.693 kb on + strandat 828.698 kb on + strandat 828.701 kb on - strandat 828.701 kb on - strandat 828.701 kb on - strandat 828.701 kb on - strandat 828.701 kb on - strandat 828.703 kb on + strandat 828.706 kb on - strandat 828.776 kb on + strandat 828.797 kb on + strandat 828.805 kb on - strandat 828.815 kb on + strandat 828.815 kb on + strandat 828.816 kb on + strandat 828.823 kb on - strandat 828.859 kb on + strandat 828.867 kb on + strandat 828.919 kb on - strandat 828.983 kb on - strandat 828.986 kb on + strandat 828.995 kb on - strandat 828.995 kb on - strandat 829.057 kb on + strand, within CSW01_18520at 829.058 kb on + strand, within CSW01_18520at 829.175 kb on + strand, within CSW01_18520at 829.237 kb on + strand, within CSW01_18520at 829.237 kb on + strand, within CSW01_18520at 829.273 kb on - strand, within CSW01_18520at 829.287 kb on - strand, within CSW01_18520at 829.287 kb on - strand, within CSW01_18520at 829.318 kb on - strand, within CSW01_18520at 829.332 kb on + strand, within CSW01_18520at 829.341 kb on - strand, within CSW01_18520at 829.366 kb on - strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.413 kb on + strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.421 kb on - strand, within CSW01_18520at 829.502 kb on + strand, within CSW01_18520at 829.502 kb on + strand, within CSW01_18520at 829.508 kb on - strand, within CSW01_18520at 829.510 kb on - strand, within CSW01_18520at 829.510 kb on - strand, within CSW01_18520at 829.517 kb on - strand, within CSW01_18520at 829.548 kb on + strand, within CSW01_18520

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
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826,694 - CSW01_18510 0.43 -0.3
826,785 - CSW01_18510 0.50 +0.1
826,804 - CSW01_18510 0.52 +0.3
826,804 - CSW01_18510 0.52 +0.5
826,835 - CSW01_18510 0.54 +0.4
826,876 + CSW01_18510 0.57 -0.2
826,953 + CSW01_18510 0.63 +0.4
826,959 - CSW01_18510 0.63 +1.3
826,961 - CSW01_18510 0.63 +0.2
827,070 - CSW01_18510 0.72 +0.3
827,078 - CSW01_18510 0.72 -0.4
827,099 - CSW01_18510 0.74 -1.4
827,099 - CSW01_18510 0.74 +0.2
827,148 + CSW01_18510 0.78 +2.0
827,148 + CSW01_18510 0.78 +0.2
827,148 + CSW01_18510 0.78 -0.2
827,188 - CSW01_18510 0.81 +2.5
827,204 + CSW01_18510 0.82 +0.7
827,212 - CSW01_18510 0.82 -0.1
827,268 - CSW01_18510 0.87 +0.0
827,281 + CSW01_18510 0.88 -0.8
827,281 + CSW01_18510 0.88 -2.1
827,304 + CSW01_18510 0.89 +0.9
827,316 + -0.6
827,326 + -0.4
827,326 + -0.3
827,344 - +0.8
827,383 - +0.4
827,402 + +0.2
827,424 + -0.6
827,424 + +0.7
827,429 + -0.2
827,429 + -0.1
827,429 + +0.2
827,432 - -0.3
827,432 - +0.1
827,432 - -0.4
827,470 - +0.2
827,495 - +1.0
827,495 - -0.5
827,571 - -0.5
827,582 + +0.1
827,595 - -0.4
827,612 - -1.9
827,612 - +0.1
827,614 + +0.9
827,621 - -0.2
827,621 - -0.3
827,626 + +0.3
827,626 + -0.1
827,638 + -0.2
827,639 + -0.1
827,643 + +0.4
827,643 + -0.2
827,643 + -0.7
827,643 + +0.8
827,643 + +0.2
827,645 + +0.2
827,646 - +0.8
827,651 - +0.5
827,661 - +1.3
827,664 + +0.1
827,665 + -0.5
827,672 - -2.6
827,672 - +0.5
827,672 - -0.4
827,672 - -0.8
827,672 - +0.5
827,672 - +0.2
827,672 - +0.6
827,731 - +1.1
827,742 + +0.5
827,772 + CSW01_18515 0.13 -0.5
827,772 + CSW01_18515 0.13 +0.3
827,773 + CSW01_18515 0.13 +0.6
827,773 + CSW01_18515 0.13 +1.2
827,777 + CSW01_18515 0.13 -0.1
827,777 + CSW01_18515 0.13 -2.3
827,779 + CSW01_18515 0.13 +0.3
827,779 + CSW01_18515 0.13 -1.1
827,785 - CSW01_18515 0.14 -2.1
827,785 - CSW01_18515 0.14 +0.4
827,785 - CSW01_18515 0.14 -1.4
827,959 + CSW01_18515 0.32 -0.8
827,993 + CSW01_18515 0.36 -1.2
828,003 + CSW01_18515 0.37 -1.4
828,011 - CSW01_18515 0.38 -0.3
828,011 - CSW01_18515 0.38 -0.9
828,013 - CSW01_18515 0.38 +0.0
828,029 + CSW01_18515 0.40 -1.0
828,037 - CSW01_18515 0.41 +0.5
828,037 - CSW01_18515 0.41 +1.1
828,037 - CSW01_18515 0.41 +0.2
828,039 + CSW01_18515 0.41 -0.4
828,047 - CSW01_18515 0.42 +0.4
828,132 + CSW01_18515 0.51 -1.4
828,194 + CSW01_18515 0.57 +1.1
828,194 + CSW01_18515 0.57 -1.4
828,194 + CSW01_18515 0.57 +0.2
828,194 + CSW01_18515 0.57 +0.0
828,194 + CSW01_18515 0.57 -0.1
828,194 + CSW01_18515 0.57 +1.0
828,194 + CSW01_18515 0.57 +0.2
828,194 + CSW01_18515 0.57 -0.8
828,194 + CSW01_18515 0.57 +0.4
828,194 + CSW01_18515 0.57 -0.5
828,194 + CSW01_18515 0.57 -0.2
828,194 + CSW01_18515 0.57 +0.3
828,202 - CSW01_18515 0.58 -0.0
828,202 - CSW01_18515 0.58 -0.8
828,202 - CSW01_18515 0.58 +0.1
828,202 - CSW01_18515 0.58 -0.8
828,202 - CSW01_18515 0.58 +0.4
828,202 - CSW01_18515 0.58 +0.6
828,202 - CSW01_18515 0.58 +1.1
828,202 - CSW01_18515 0.58 +0.5
828,234 + CSW01_18515 0.61 -0.9
828,241 - CSW01_18515 0.62 +0.4
828,248 - CSW01_18515 0.63 -0.7
828,249 + CSW01_18515 0.63 -0.6
828,249 - CSW01_18515 0.63 +0.2
828,251 + CSW01_18515 0.63 +0.1
828,251 + CSW01_18515 0.63 +0.2
828,259 - CSW01_18515 0.64 +0.5
828,261 - CSW01_18515 0.64 +0.3
828,311 - CSW01_18515 0.70 -0.3
828,315 + CSW01_18515 0.70 -0.3
828,320 + CSW01_18515 0.71 +0.2
828,361 + CSW01_18515 0.75 +0.5
828,429 - CSW01_18515 0.82 -0.2
828,452 + CSW01_18515 0.85 +0.4
828,458 - CSW01_18515 0.85 -0.1
828,471 + CSW01_18515 0.87 +0.5
828,473 - CSW01_18515 0.87 -1.0
828,477 + CSW01_18515 0.87 -0.0
828,477 + CSW01_18515 0.87 -0.2
828,477 + CSW01_18515 0.87 -0.8
828,477 + CSW01_18515 0.87 +0.9
828,477 + CSW01_18515 0.87 -1.7
828,477 + CSW01_18515 0.87 +1.3
828,477 + CSW01_18515 0.87 +0.2
828,485 - CSW01_18515 0.88 +0.7
828,485 - CSW01_18515 0.88 -0.4
828,485 - CSW01_18515 0.88 +0.8
828,485 - CSW01_18515 0.88 -0.5
828,485 - CSW01_18515 0.88 +0.4
828,681 - +0.2
828,683 + +0.5
828,683 + -0.5
828,691 + +0.8
828,691 - -0.5
828,691 - +0.3
828,693 + +0.2
828,693 + +0.4
828,693 + +0.5
828,698 + -0.1
828,701 - +0.2
828,701 - +1.3
828,701 - -0.3
828,701 - -0.7
828,701 - +0.4
828,703 + +0.3
828,706 - +0.0
828,776 + -3.5
828,797 + -0.6
828,805 - -0.7
828,815 + +0.0
828,815 + +0.2
828,816 + -0.3
828,823 - +0.4
828,859 + +0.3
828,867 + -0.5
828,919 - -0.5
828,983 - +0.3
828,986 + -0.8
828,995 - -0.4
828,995 - +1.5
829,057 + CSW01_18520 0.15 +0.0
829,058 + CSW01_18520 0.15 -0.5
829,175 + CSW01_18520 0.26 +0.4
829,237 + CSW01_18520 0.32 -0.4
829,237 + CSW01_18520 0.32 +0.6
829,273 - CSW01_18520 0.35 -0.1
829,287 - CSW01_18520 0.36 -0.1
829,287 - CSW01_18520 0.36 -0.7
829,318 - CSW01_18520 0.39 +0.5
829,332 + CSW01_18520 0.40 -0.4
829,341 - CSW01_18520 0.41 -1.3
829,366 - CSW01_18520 0.44 +0.9
829,413 + CSW01_18520 0.48 +0.2
829,413 + CSW01_18520 0.48 -0.2
829,413 + CSW01_18520 0.48 +0.3
829,413 + CSW01_18520 0.48 +0.6
829,413 + CSW01_18520 0.48 -0.4
829,413 + CSW01_18520 0.48 -1.0
829,413 + CSW01_18520 0.48 +0.4
829,413 + CSW01_18520 0.48 -0.4
829,413 + CSW01_18520 0.48 +0.6
829,413 + CSW01_18520 0.48 +2.2
829,413 + CSW01_18520 0.48 -0.2
829,413 + CSW01_18520 0.48 +0.1
829,413 + CSW01_18520 0.48 -0.6
829,413 + CSW01_18520 0.48 -0.2
829,413 + CSW01_18520 0.48 -1.4
829,413 + CSW01_18520 0.48 -0.2
829,421 - CSW01_18520 0.49 -1.7
829,421 - CSW01_18520 0.49 -0.2
829,421 - CSW01_18520 0.49 -1.5
829,421 - CSW01_18520 0.49 -0.0
829,421 - CSW01_18520 0.49 +0.2
829,421 - CSW01_18520 0.49 +1.0
829,421 - CSW01_18520 0.49 +0.8
829,421 - CSW01_18520 0.49 +1.8
829,421 - CSW01_18520 0.49 -0.4
829,421 - CSW01_18520 0.49 +0.2
829,421 - CSW01_18520 0.49 +0.3
829,421 - CSW01_18520 0.49 +0.0
829,502 + CSW01_18520 0.56 -0.0
829,502 + CSW01_18520 0.56 -2.4
829,508 - CSW01_18520 0.57 +0.0
829,510 - CSW01_18520 0.57 -0.6
829,510 - CSW01_18520 0.57 +0.5
829,517 - CSW01_18520 0.58 +1.0
829,548 + CSW01_18520 0.60 -1.3

Or see this region's nucleotide sequence