Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18425

Experiment: LB_Anaerobic_180MIN_ZN16A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18410 and CSW01_18415 are separated by 8 nucleotidesCSW01_18415 and CSW01_18420 are separated by 161 nucleotidesCSW01_18420 and CSW01_18425 are separated by 7 nucleotidesCSW01_18425 and CSW01_18430 are separated by 291 nucleotides CSW01_18410: CSW01_18410 - ABC transporter ATP-binding protein, at 804,564 to 805,247 _18410 CSW01_18415: CSW01_18415 - hypothetical protein, at 805,256 to 805,927 _18415 CSW01_18420: CSW01_18420 - hypothetical protein, at 806,089 to 806,232 _18420 CSW01_18425: CSW01_18425 - oxidoreductase, at 806,240 to 807,163 _18425 CSW01_18430: CSW01_18430 - alpha-amylase, at 807,455 to 809,527 _18430 Position (kb) 806 807 808Strain fitness (log2 ratio) -2 -1 0 1 2 3at 805.253 kb on + strandat 805.253 kb on + strandat 805.253 kb on + strandat 805.274 kb on + strandat 805.282 kb on - strandat 805.282 kb on - strandat 805.282 kb on - strandat 805.337 kb on - strand, within CSW01_18415at 805.383 kb on - strand, within CSW01_18415at 805.464 kb on - strand, within CSW01_18415at 805.561 kb on + strand, within CSW01_18415at 805.569 kb on - strand, within CSW01_18415at 805.569 kb on - strand, within CSW01_18415at 805.577 kb on + strand, within CSW01_18415at 805.707 kb on - strand, within CSW01_18415at 805.709 kb on + strand, within CSW01_18415at 805.724 kb on + strand, within CSW01_18415at 805.778 kb on + strand, within CSW01_18415at 805.813 kb on + strand, within CSW01_18415at 805.813 kb on + strand, within CSW01_18415at 805.822 kb on - strand, within CSW01_18415at 805.826 kb on + strand, within CSW01_18415at 805.856 kb on + strand, within CSW01_18415at 805.983 kb on - strandat 806.079 kb on - strandat 806.135 kb on + strand, within CSW01_18420at 806.196 kb on + strand, within CSW01_18420at 806.196 kb on + strand, within CSW01_18420at 806.204 kb on - strand, within CSW01_18420at 806.209 kb on + strand, within CSW01_18420at 806.237 kb on - strandat 806.249 kb on + strandat 806.249 kb on + strandat 806.249 kb on + strandat 806.257 kb on - strandat 806.306 kb on + strandat 806.424 kb on - strand, within CSW01_18425at 806.428 kb on + strand, within CSW01_18425at 806.446 kb on - strand, within CSW01_18425at 806.451 kb on - strand, within CSW01_18425at 806.509 kb on + strand, within CSW01_18425at 806.602 kb on - strand, within CSW01_18425at 806.608 kb on - strand, within CSW01_18425at 806.618 kb on - strand, within CSW01_18425at 806.626 kb on - strand, within CSW01_18425at 806.653 kb on + strand, within CSW01_18425at 806.658 kb on + strand, within CSW01_18425at 806.658 kb on + strand, within CSW01_18425at 806.697 kb on + strand, within CSW01_18425at 806.705 kb on - strand, within CSW01_18425at 806.803 kb on + strand, within CSW01_18425at 806.887 kb on + strand, within CSW01_18425at 806.895 kb on - strand, within CSW01_18425at 806.929 kb on + strand, within CSW01_18425at 806.950 kb on - strand, within CSW01_18425at 806.970 kb on - strand, within CSW01_18425at 807.006 kb on + strand, within CSW01_18425at 807.027 kb on - strand, within CSW01_18425at 807.049 kb on - strand, within CSW01_18425at 807.052 kb on + strand, within CSW01_18425at 807.090 kb on + strandat 807.099 kb on + strandat 807.109 kb on + strandat 807.117 kb on - strandat 807.117 kb on - strandat 807.117 kb on - strandat 807.117 kb on - strandat 807.205 kb on + strandat 807.324 kb on - strandat 807.366 kb on + strandat 807.467 kb on + strandat 807.467 kb on + strandat 807.484 kb on + strandat 807.491 kb on + strandat 807.491 kb on + strandat 807.492 kb on - strandat 807.520 kb on + strandat 807.703 kb on + strand, within CSW01_18430at 807.713 kb on + strand, within CSW01_18430at 807.773 kb on + strand, within CSW01_18430at 807.781 kb on - strand, within CSW01_18430at 807.785 kb on + strand, within CSW01_18430at 807.786 kb on - strand, within CSW01_18430at 807.807 kb on + strand, within CSW01_18430at 807.807 kb on + strand, within CSW01_18430at 807.808 kb on + strand, within CSW01_18430at 807.815 kb on - strand, within CSW01_18430at 807.873 kb on - strand, within CSW01_18430at 807.873 kb on - strand, within CSW01_18430at 807.947 kb on + strand, within CSW01_18430at 807.967 kb on - strand, within CSW01_18430at 807.975 kb on + strand, within CSW01_18430at 808.002 kb on + strand, within CSW01_18430at 808.019 kb on + strand, within CSW01_18430at 808.059 kb on - strand, within CSW01_18430at 808.137 kb on - strand, within CSW01_18430at 808.160 kb on - strand, within CSW01_18430

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
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805,253 + +0.3
805,253 + -0.4
805,253 + +0.4
805,274 + -0.1
805,282 - -0.7
805,282 - +1.5
805,282 - +0.0
805,337 - CSW01_18415 0.12 +0.3
805,383 - CSW01_18415 0.19 -0.3
805,464 - CSW01_18415 0.31 +0.3
805,561 + CSW01_18415 0.45 +0.8
805,569 - CSW01_18415 0.47 -0.1
805,569 - CSW01_18415 0.47 +0.6
805,577 + CSW01_18415 0.48 +2.1
805,707 - CSW01_18415 0.67 +1.2
805,709 + CSW01_18415 0.67 +0.0
805,724 + CSW01_18415 0.70 +0.1
805,778 + CSW01_18415 0.78 -0.3
805,813 + CSW01_18415 0.83 -0.7
805,813 + CSW01_18415 0.83 -0.0
805,822 - CSW01_18415 0.84 +0.0
805,826 + CSW01_18415 0.85 -0.7
805,856 + CSW01_18415 0.89 +0.2
805,983 - +0.5
806,079 - +2.8
806,135 + CSW01_18420 0.32 +0.9
806,196 + CSW01_18420 0.74 +0.2
806,196 + CSW01_18420 0.74 -0.2
806,204 - CSW01_18420 0.80 -0.2
806,209 + CSW01_18420 0.83 -1.0
806,237 - -1.8
806,249 + +0.4
806,249 + -0.1
806,249 + +0.1
806,257 - -0.3
806,306 + -0.3
806,424 - CSW01_18425 0.20 +0.4
806,428 + CSW01_18425 0.20 +0.6
806,446 - CSW01_18425 0.22 -0.3
806,451 - CSW01_18425 0.23 +0.2
806,509 + CSW01_18425 0.29 +0.8
806,602 - CSW01_18425 0.39 -0.3
806,608 - CSW01_18425 0.40 +2.5
806,618 - CSW01_18425 0.41 -0.2
806,626 - CSW01_18425 0.42 +0.2
806,653 + CSW01_18425 0.45 +0.1
806,658 + CSW01_18425 0.45 +0.7
806,658 + CSW01_18425 0.45 +0.7
806,697 + CSW01_18425 0.49 -0.5
806,705 - CSW01_18425 0.50 +0.6
806,803 + CSW01_18425 0.61 +0.8
806,887 + CSW01_18425 0.70 -0.6
806,895 - CSW01_18425 0.71 -0.7
806,929 + CSW01_18425 0.75 +0.0
806,950 - CSW01_18425 0.77 -0.0
806,970 - CSW01_18425 0.79 -0.1
807,006 + CSW01_18425 0.83 -0.5
807,027 - CSW01_18425 0.85 +0.1
807,049 - CSW01_18425 0.88 +1.0
807,052 + CSW01_18425 0.88 -0.8
807,090 + +0.8
807,099 + -0.5
807,109 + +0.4
807,117 - -0.2
807,117 - -0.4
807,117 - -1.0
807,117 - -0.8
807,205 + -0.4
807,324 - +0.8
807,366 + +0.1
807,467 + -0.3
807,467 + +1.8
807,484 + +0.1
807,491 + -1.2
807,491 + -0.4
807,492 - -0.2
807,520 + +0.9
807,703 + CSW01_18430 0.12 -0.0
807,713 + CSW01_18430 0.12 +0.5
807,773 + CSW01_18430 0.15 +0.4
807,781 - CSW01_18430 0.16 -0.1
807,785 + CSW01_18430 0.16 +0.0
807,786 - CSW01_18430 0.16 +0.5
807,807 + CSW01_18430 0.17 -1.0
807,807 + CSW01_18430 0.17 -0.0
807,808 + CSW01_18430 0.17 +0.4
807,815 - CSW01_18430 0.17 +0.1
807,873 - CSW01_18430 0.20 -1.2
807,873 - CSW01_18430 0.20 +0.0
807,947 + CSW01_18430 0.24 -0.1
807,967 - CSW01_18430 0.25 -0.4
807,975 + CSW01_18430 0.25 -0.4
808,002 + CSW01_18430 0.26 +0.6
808,019 + CSW01_18430 0.27 -0.1
808,059 - CSW01_18430 0.29 +0.1
808,137 - CSW01_18430 0.33 +0.8
808,160 - CSW01_18430 0.34 +0.0

Or see this region's nucleotide sequence