Experiment: LB_Anaerobic_180MIN_ZN16A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18175 and CSW01_18180 are separated by 81 nucleotides CSW01_18180 and CSW01_18185 are separated by 143 nucleotides
CSW01_18175: CSW01_18175 - LTA synthase family protein, at 741,484 to 743,457
_18175
CSW01_18180: CSW01_18180 - serine protease, at 743,539 to 744,531
_18180
CSW01_18185: CSW01_18185 - DEAD/DEAH box family ATP-dependent RNA helicase, at 744,675 to 746,666
_18185
Position (kb) 743
744
745 Strain fitness (log2 ratio) -2
-1
0
1
2 at 742.568 kb on - strand, within CSW01_18175 at 742.787 kb on + strand, within CSW01_18175 at 742.858 kb on + strand, within CSW01_18175 at 742.884 kb on + strand, within CSW01_18175 at 742.929 kb on + strand, within CSW01_18175 at 742.983 kb on - strand, within CSW01_18175 at 742.995 kb on - strand, within CSW01_18175 at 743.001 kb on + strand, within CSW01_18175 at 743.041 kb on - strand, within CSW01_18175 at 743.286 kb on - strand at 743.397 kb on - strand at 743.397 kb on - strand at 743.464 kb on - strand at 743.634 kb on + strand at 743.636 kb on - strand at 743.648 kb on - strand, within CSW01_18180 at 743.670 kb on - strand, within CSW01_18180 at 743.673 kb on - strand, within CSW01_18180 at 743.675 kb on - strand, within CSW01_18180 at 743.683 kb on - strand, within CSW01_18180 at 743.706 kb on + strand, within CSW01_18180 at 743.799 kb on - strand, within CSW01_18180 at 743.882 kb on - strand, within CSW01_18180 at 743.934 kb on - strand, within CSW01_18180 at 743.979 kb on + strand, within CSW01_18180 at 743.986 kb on + strand, within CSW01_18180 at 743.986 kb on + strand, within CSW01_18180 at 743.986 kb on + strand, within CSW01_18180 at 743.994 kb on - strand, within CSW01_18180 at 744.040 kb on + strand, within CSW01_18180 at 744.040 kb on + strand, within CSW01_18180 at 744.048 kb on - strand, within CSW01_18180 at 744.096 kb on - strand, within CSW01_18180 at 744.105 kb on - strand, within CSW01_18180 at 744.123 kb on + strand, within CSW01_18180 at 744.164 kb on + strand, within CSW01_18180 at 744.284 kb on + strand, within CSW01_18180 at 744.284 kb on + strand, within CSW01_18180 at 744.284 kb on - strand, within CSW01_18180 at 744.292 kb on - strand, within CSW01_18180 at 744.292 kb on - strand, within CSW01_18180 at 744.296 kb on + strand, within CSW01_18180 at 744.357 kb on + strand, within CSW01_18180 at 744.718 kb on - strand at 744.719 kb on + strand at 744.737 kb on - strand at 744.875 kb on - strand, within CSW01_18185 at 745.227 kb on - strand, within CSW01_18185 at 745.316 kb on - strand, within CSW01_18185
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A remove 742,568 - CSW01_18175 0.55 +0.1 742,787 + CSW01_18175 0.66 +0.3 742,858 + CSW01_18175 0.70 -2.6 742,884 + CSW01_18175 0.71 +0.3 742,929 + CSW01_18175 0.73 -0.1 742,983 - CSW01_18175 0.76 +2.5 742,995 - CSW01_18175 0.77 +0.8 743,001 + CSW01_18175 0.77 +0.2 743,041 - CSW01_18175 0.79 -0.8 743,286 - -0.5 743,397 - +1.6 743,397 - +0.2 743,464 - -0.3 743,634 + +0.5 743,636 - -0.7 743,648 - CSW01_18180 0.11 +1.0 743,670 - CSW01_18180 0.13 +0.7 743,673 - CSW01_18180 0.13 +0.5 743,675 - CSW01_18180 0.14 +0.2 743,683 - CSW01_18180 0.15 -0.5 743,706 + CSW01_18180 0.17 +0.0 743,799 - CSW01_18180 0.26 +1.0 743,882 - CSW01_18180 0.35 -1.3 743,934 - CSW01_18180 0.40 +0.2 743,979 + CSW01_18180 0.44 +1.6 743,986 + CSW01_18180 0.45 +0.2 743,986 + CSW01_18180 0.45 +1.1 743,986 + CSW01_18180 0.45 -0.5 743,994 - CSW01_18180 0.46 +0.9 744,040 + CSW01_18180 0.50 -0.3 744,040 + CSW01_18180 0.50 -0.4 744,048 - CSW01_18180 0.51 +0.3 744,096 - CSW01_18180 0.56 -0.4 744,105 - CSW01_18180 0.57 -0.3 744,123 + CSW01_18180 0.59 +0.0 744,164 + CSW01_18180 0.63 +1.1 744,284 + CSW01_18180 0.75 +0.3 744,284 + CSW01_18180 0.75 -0.7 744,284 - CSW01_18180 0.75 +0.2 744,292 - CSW01_18180 0.76 +0.6 744,292 - CSW01_18180 0.76 -0.1 744,296 + CSW01_18180 0.76 +1.5 744,357 + CSW01_18180 0.82 +0.1 744,718 - -0.2 744,719 + +0.8 744,737 - +1.5 744,875 - CSW01_18185 0.10 +0.0 745,227 - CSW01_18185 0.28 +0.7 745,316 - CSW01_18185 0.32 +1.2
Or see this region's nucleotide sequence