Experiment: LB_Anaerobic_180MIN_ZN16A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18100 and CSW01_18105 are separated by 125 nucleotides CSW01_18105 and CSW01_18110 overlap by 4 nucleotides CSW01_18110 and CSW01_18115 are separated by 56 nucleotides
CSW01_18100: CSW01_18100 - sensor domain-containing phosphodiesterase, at 727,140 to 729,023
_18100
CSW01_18105: CSW01_18105 - isopentenyl-diphosphate delta-isomerase, at 729,149 to 730,798
_18105
CSW01_18110: CSW01_18110 - hypothetical protein, at 730,795 to 730,899
_18110
CSW01_18115: CSW01_18115 - molecular chaperone DnaJ, at 730,956 to 731,585
_18115
Position (kb) 729
730
731 Strain fitness (log2 ratio) -2
-1
0
1
2 at 728.162 kb on + strand, within CSW01_18100 at 728.169 kb on + strand, within CSW01_18100 at 728.314 kb on - strand, within CSW01_18100 at 728.436 kb on + strand, within CSW01_18100 at 728.444 kb on - strand, within CSW01_18100 at 728.539 kb on + strand, within CSW01_18100 at 728.547 kb on - strand, within CSW01_18100 at 728.547 kb on - strand, within CSW01_18100 at 728.576 kb on + strand, within CSW01_18100 at 728.576 kb on + strand, within CSW01_18100 at 728.597 kb on + strand, within CSW01_18100 at 728.597 kb on + strand, within CSW01_18100 at 728.605 kb on - strand, within CSW01_18100 at 728.606 kb on - strand, within CSW01_18100 at 728.695 kb on + strand, within CSW01_18100 at 728.740 kb on - strand, within CSW01_18100 at 728.777 kb on + strand, within CSW01_18100 at 728.824 kb on - strand, within CSW01_18100 at 728.850 kb on - strand at 728.893 kb on - strand at 728.933 kb on + strand at 728.933 kb on + strand at 728.933 kb on + strand at 728.941 kb on - strand at 728.941 kb on - strand at 728.970 kb on + strand at 728.978 kb on - strand at 728.978 kb on - strand at 729.020 kb on - strand at 729.034 kb on + strand at 729.034 kb on + strand at 729.039 kb on + strand at 729.039 kb on + strand at 729.039 kb on + strand at 729.042 kb on - strand at 729.042 kb on - strand at 731.115 kb on + strand, within CSW01_18115 at 731.141 kb on - strand, within CSW01_18115 at 731.237 kb on + strand, within CSW01_18115 at 731.250 kb on - strand, within CSW01_18115 at 731.260 kb on + strand, within CSW01_18115 at 731.324 kb on - strand, within CSW01_18115 at 731.357 kb on - strand, within CSW01_18115 at 731.357 kb on - strand, within CSW01_18115 at 731.369 kb on + strand, within CSW01_18115 at 731.386 kb on - strand, within CSW01_18115 at 731.454 kb on + strand, within CSW01_18115 at 731.745 kb on + strand at 731.796 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A remove 728,162 + CSW01_18100 0.54 -0.0 728,169 + CSW01_18100 0.55 -0.9 728,314 - CSW01_18100 0.62 +1.9 728,436 + CSW01_18100 0.69 +0.2 728,444 - CSW01_18100 0.69 +1.2 728,539 + CSW01_18100 0.74 +0.9 728,547 - CSW01_18100 0.75 +0.5 728,547 - CSW01_18100 0.75 -1.0 728,576 + CSW01_18100 0.76 -0.3 728,576 + CSW01_18100 0.76 -0.5 728,597 + CSW01_18100 0.77 -2.6 728,597 + CSW01_18100 0.77 +0.2 728,605 - CSW01_18100 0.78 -0.7 728,606 - CSW01_18100 0.78 -1.1 728,695 + CSW01_18100 0.83 +2.0 728,740 - CSW01_18100 0.85 -0.7 728,777 + CSW01_18100 0.87 +0.7 728,824 - CSW01_18100 0.89 +0.5 728,850 - +0.3 728,893 - +0.0 728,933 + -0.2 728,933 + -1.4 728,933 + -0.7 728,941 - -0.0 728,941 - +0.7 728,970 + +0.3 728,978 - -0.7 728,978 - -0.0 729,020 - +0.0 729,034 + -0.5 729,034 + -0.1 729,039 + +1.0 729,039 + +0.0 729,039 + -0.3 729,042 - -0.2 729,042 - -0.3 731,115 + CSW01_18115 0.25 -0.5 731,141 - CSW01_18115 0.29 +0.3 731,237 + CSW01_18115 0.45 -0.4 731,250 - CSW01_18115 0.47 -1.4 731,260 + CSW01_18115 0.48 -0.3 731,324 - CSW01_18115 0.58 +0.7 731,357 - CSW01_18115 0.64 +1.0 731,357 - CSW01_18115 0.64 -0.1 731,369 + CSW01_18115 0.66 +0.1 731,386 - CSW01_18115 0.68 +0.2 731,454 + CSW01_18115 0.79 -2.2 731,745 + +0.2 731,796 - -1.6
Or see this region's nucleotide sequence