Experiment: LB_Anaerobic_180MIN_ZN16A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18010 and CSW01_18015 are separated by 103 nucleotides CSW01_18015 and CSW01_18020 are separated by 99 nucleotides CSW01_18020 and CSW01_18025 are separated by 36 nucleotides CSW01_18025 and CSW01_18030 are separated by 36 nucleotides
CSW01_18010: CSW01_18010 - cytochrome C554, at 708,387 to 708,695
_18010
CSW01_18015: CSW01_18015 - TetR/AcrR family transcriptional regulator, at 708,799 to 709,533
_18015
CSW01_18020: CSW01_18020 - DEAD/DEAH box helicase, at 709,633 to 710,901
_18020
CSW01_18025: CSW01_18025 - ACP phosphodiesterase, at 710,938 to 711,519
_18025
CSW01_18030: CSW01_18030 - hypothetical protein, at 711,556 to 711,675
_18030
Position (kb) 709
710
711 Strain fitness (log2 ratio) -1
0
1
2 at 708.757 kb on - strand at 708.779 kb on + strand at 708.787 kb on - strand at 708.872 kb on + strand at 708.882 kb on + strand, within CSW01_18015 at 708.904 kb on - strand, within CSW01_18015 at 709.044 kb on + strand, within CSW01_18015 at 709.044 kb on + strand, within CSW01_18015 at 709.044 kb on + strand, within CSW01_18015 at 709.052 kb on - strand, within CSW01_18015 at 709.052 kb on - strand, within CSW01_18015 at 709.058 kb on - strand, within CSW01_18015 at 709.084 kb on - strand, within CSW01_18015 at 709.084 kb on - strand, within CSW01_18015 at 709.199 kb on + strand, within CSW01_18015 at 709.207 kb on - strand, within CSW01_18015 at 709.250 kb on - strand, within CSW01_18015 at 709.341 kb on - strand, within CSW01_18015 at 709.412 kb on - strand, within CSW01_18015 at 709.443 kb on + strand, within CSW01_18015 at 709.443 kb on + strand, within CSW01_18015 at 709.456 kb on - strand, within CSW01_18015 at 709.466 kb on - strand at 709.487 kb on - strand at 709.748 kb on - strand at 709.752 kb on + strand at 709.752 kb on + strand at 709.760 kb on - strand, within CSW01_18020 at 709.858 kb on + strand, within CSW01_18020 at 709.866 kb on - strand, within CSW01_18020 at 709.866 kb on - strand, within CSW01_18020 at 710.181 kb on - strand, within CSW01_18020 at 710.254 kb on + strand, within CSW01_18020 at 710.324 kb on + strand, within CSW01_18020 at 710.379 kb on - strand, within CSW01_18020 at 710.390 kb on - strand, within CSW01_18020 at 710.428 kb on + strand, within CSW01_18020 at 710.430 kb on + strand, within CSW01_18020 at 710.567 kb on + strand, within CSW01_18020 at 710.582 kb on - strand, within CSW01_18020 at 710.605 kb on + strand, within CSW01_18020 at 710.613 kb on - strand, within CSW01_18020 at 710.682 kb on + strand, within CSW01_18020 at 710.843 kb on + strand at 710.892 kb on + strand at 710.958 kb on - strand at 711.016 kb on - strand, within CSW01_18025 at 711.018 kb on + strand, within CSW01_18025 at 711.019 kb on + strand, within CSW01_18025 at 711.026 kb on - strand, within CSW01_18025 at 711.041 kb on + strand, within CSW01_18025 at 711.041 kb on + strand, within CSW01_18025 at 711.069 kb on + strand, within CSW01_18025 at 711.074 kb on + strand, within CSW01_18025 at 711.079 kb on + strand, within CSW01_18025 at 711.082 kb on - strand, within CSW01_18025 at 711.100 kb on + strand, within CSW01_18025 at 711.124 kb on + strand, within CSW01_18025 at 711.199 kb on + strand, within CSW01_18025 at 711.207 kb on - strand, within CSW01_18025 at 711.207 kb on - strand, within CSW01_18025 at 711.260 kb on - strand, within CSW01_18025 at 711.285 kb on + strand, within CSW01_18025 at 711.372 kb on + strand, within CSW01_18025 at 711.385 kb on + strand, within CSW01_18025 at 711.587 kb on - strand, within CSW01_18030 at 711.637 kb on - strand, within CSW01_18030 at 711.639 kb on + strand, within CSW01_18030 at 711.647 kb on - strand, within CSW01_18030 at 711.683 kb on - strand at 711.683 kb on - strand at 711.710 kb on + strand at 711.737 kb on + strand at 711.761 kb on - strand at 711.767 kb on + strand at 711.817 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A remove 708,757 - -0.2 708,779 + +0.5 708,787 - +2.2 708,872 + +0.5 708,882 + CSW01_18015 0.11 -0.4 708,904 - CSW01_18015 0.14 -0.2 709,044 + CSW01_18015 0.33 +0.4 709,044 + CSW01_18015 0.33 +1.1 709,044 + CSW01_18015 0.33 -0.4 709,052 - CSW01_18015 0.34 +0.4 709,052 - CSW01_18015 0.34 +0.8 709,058 - CSW01_18015 0.35 +0.2 709,084 - CSW01_18015 0.39 +0.0 709,084 - CSW01_18015 0.39 -1.5 709,199 + CSW01_18015 0.54 -0.6 709,207 - CSW01_18015 0.56 +0.5 709,250 - CSW01_18015 0.61 +0.2 709,341 - CSW01_18015 0.74 -1.0 709,412 - CSW01_18015 0.83 +0.6 709,443 + CSW01_18015 0.88 -0.0 709,443 + CSW01_18015 0.88 +0.2 709,456 - CSW01_18015 0.89 -0.4 709,466 - -0.9 709,487 - -0.5 709,748 - +0.7 709,752 + -1.1 709,752 + -1.1 709,760 - CSW01_18020 0.10 -1.0 709,858 + CSW01_18020 0.18 -0.9 709,866 - CSW01_18020 0.18 +0.2 709,866 - CSW01_18020 0.18 +1.2 710,181 - CSW01_18020 0.43 -0.4 710,254 + CSW01_18020 0.49 +0.9 710,324 + CSW01_18020 0.54 +0.2 710,379 - CSW01_18020 0.59 +0.5 710,390 - CSW01_18020 0.60 -0.3 710,428 + CSW01_18020 0.63 +0.8 710,430 + CSW01_18020 0.63 +0.2 710,567 + CSW01_18020 0.74 -1.4 710,582 - CSW01_18020 0.75 -0.1 710,605 + CSW01_18020 0.77 -0.5 710,613 - CSW01_18020 0.77 +0.5 710,682 + CSW01_18020 0.83 -0.0 710,843 + -0.6 710,892 + +1.7 710,958 - +0.3 711,016 - CSW01_18025 0.13 +0.8 711,018 + CSW01_18025 0.14 -0.5 711,019 + CSW01_18025 0.14 +1.6 711,026 - CSW01_18025 0.15 -0.2 711,041 + CSW01_18025 0.18 +0.8 711,041 + CSW01_18025 0.18 -0.0 711,069 + CSW01_18025 0.23 -0.7 711,074 + CSW01_18025 0.23 -0.3 711,079 + CSW01_18025 0.24 -0.5 711,082 - CSW01_18025 0.25 -0.1 711,100 + CSW01_18025 0.28 +0.2 711,124 + CSW01_18025 0.32 -0.1 711,199 + CSW01_18025 0.45 +0.1 711,207 - CSW01_18025 0.46 -1.3 711,207 - CSW01_18025 0.46 +0.0 711,260 - CSW01_18025 0.55 +0.2 711,285 + CSW01_18025 0.60 +0.0 711,372 + CSW01_18025 0.75 -0.9 711,385 + CSW01_18025 0.77 +0.2 711,587 - CSW01_18030 0.26 -1.5 711,637 - CSW01_18030 0.68 +0.1 711,639 + CSW01_18030 0.69 -1.3 711,647 - CSW01_18030 0.76 +0.4 711,683 - -0.0 711,683 - -0.5 711,710 + -1.0 711,737 + -0.6 711,761 - -0.1 711,767 + +0.6 711,817 - +0.2
Or see this region's nucleotide sequence