Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17500

Experiment: LB_Anaerobic_180MIN_ZN16A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17495 and CSW01_17500 are separated by 101 nucleotidesCSW01_17500 and CSW01_17505 are separated by 185 nucleotides CSW01_17495: CSW01_17495 - glycerol-3-phosphate dehydrogenase, at 591,126 to 592,664 _17495 CSW01_17500: CSW01_17500 - methyl-accepting chemotaxis protein, at 592,766 to 594,376 _17500 CSW01_17505: CSW01_17505 - hypothetical protein, at 594,562 to 595,185 _17505 Position (kb) 592 593 594 595Strain fitness (log2 ratio) -3 -2 -1 0 1at 591.784 kb on - strand, within CSW01_17495at 591.812 kb on + strand, within CSW01_17495at 591.812 kb on + strand, within CSW01_17495at 591.817 kb on + strand, within CSW01_17495at 591.887 kb on + strand, within CSW01_17495at 591.887 kb on + strand, within CSW01_17495at 591.889 kb on + strand, within CSW01_17495at 591.895 kb on - strand, within CSW01_17495at 591.895 kb on - strand, within CSW01_17495at 591.895 kb on - strand, within CSW01_17495at 592.153 kb on + strand, within CSW01_17495at 592.153 kb on + strand, within CSW01_17495at 592.153 kb on + strand, within CSW01_17495at 592.404 kb on + strand, within CSW01_17495at 592.480 kb on + strand, within CSW01_17495at 592.492 kb on + strand, within CSW01_17495at 592.498 kb on - strand, within CSW01_17495at 592.585 kb on + strandat 592.906 kb on + strandat 592.906 kb on + strandat 592.913 kb on + strandat 592.933 kb on + strand, within CSW01_17500at 592.974 kb on - strand, within CSW01_17500at 593.020 kb on + strand, within CSW01_17500at 593.068 kb on - strand, within CSW01_17500at 593.077 kb on + strand, within CSW01_17500at 593.077 kb on + strand, within CSW01_17500at 593.174 kb on + strand, within CSW01_17500at 593.179 kb on + strand, within CSW01_17500at 593.276 kb on - strand, within CSW01_17500at 593.305 kb on + strand, within CSW01_17500at 593.313 kb on - strand, within CSW01_17500at 593.313 kb on - strand, within CSW01_17500at 593.313 kb on - strand, within CSW01_17500at 593.323 kb on - strand, within CSW01_17500at 593.465 kb on + strand, within CSW01_17500at 593.473 kb on - strand, within CSW01_17500at 593.473 kb on - strand, within CSW01_17500at 593.555 kb on - strand, within CSW01_17500at 593.611 kb on - strand, within CSW01_17500at 593.707 kb on + strand, within CSW01_17500at 593.719 kb on + strand, within CSW01_17500at 593.727 kb on - strand, within CSW01_17500at 593.727 kb on - strand, within CSW01_17500at 593.727 kb on - strand, within CSW01_17500at 593.728 kb on + strand, within CSW01_17500at 593.736 kb on - strand, within CSW01_17500at 593.736 kb on - strand, within CSW01_17500at 593.749 kb on - strand, within CSW01_17500at 593.749 kb on - strand, within CSW01_17500at 593.807 kb on + strand, within CSW01_17500at 593.809 kb on + strand, within CSW01_17500at 593.868 kb on + strand, within CSW01_17500at 593.876 kb on - strand, within CSW01_17500at 593.890 kb on - strand, within CSW01_17500at 593.984 kb on - strand, within CSW01_17500at 594.000 kb on + strand, within CSW01_17500at 594.000 kb on + strand, within CSW01_17500at 594.000 kb on + strand, within CSW01_17500at 594.008 kb on - strand, within CSW01_17500at 594.106 kb on + strand, within CSW01_17500at 594.113 kb on - strand, within CSW01_17500at 594.113 kb on - strand, within CSW01_17500at 594.114 kb on - strand, within CSW01_17500at 594.248 kb on + strandat 594.322 kb on - strandat 594.407 kb on + strandat 594.415 kb on - strandat 594.456 kb on - strandat 594.591 kb on + strandat 594.694 kb on - strand, within CSW01_17505at 594.753 kb on + strand, within CSW01_17505at 594.799 kb on + strand, within CSW01_17505at 594.898 kb on - strand, within CSW01_17505at 595.005 kb on - strand, within CSW01_17505at 595.011 kb on + strand, within CSW01_17505at 595.014 kb on + strand, within CSW01_17505at 595.037 kb on + strand, within CSW01_17505at 595.045 kb on - strand, within CSW01_17505at 595.052 kb on + strand, within CSW01_17505at 595.126 kb on - strandat 595.359 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
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591,784 - CSW01_17495 0.43 -3.3
591,812 + CSW01_17495 0.45 -0.9
591,812 + CSW01_17495 0.45 +0.6
591,817 + CSW01_17495 0.45 -1.0
591,887 + CSW01_17495 0.49 -1.1
591,887 + CSW01_17495 0.49 -0.8
591,889 + CSW01_17495 0.50 -1.2
591,895 - CSW01_17495 0.50 -0.1
591,895 - CSW01_17495 0.50 -1.8
591,895 - CSW01_17495 0.50 -1.4
592,153 + CSW01_17495 0.67 -0.1
592,153 + CSW01_17495 0.67 -0.7
592,153 + CSW01_17495 0.67 +0.2
592,404 + CSW01_17495 0.83 -0.2
592,480 + CSW01_17495 0.88 -0.5
592,492 + CSW01_17495 0.89 -0.6
592,498 - CSW01_17495 0.89 +0.2
592,585 + -0.0
592,906 + +0.6
592,906 + +0.2
592,913 + +0.6
592,933 + CSW01_17500 0.10 +0.5
592,974 - CSW01_17500 0.13 -0.5
593,020 + CSW01_17500 0.16 -1.2
593,068 - CSW01_17500 0.19 -0.0
593,077 + CSW01_17500 0.19 -0.1
593,077 + CSW01_17500 0.19 -0.5
593,174 + CSW01_17500 0.25 +0.1
593,179 + CSW01_17500 0.26 -0.1
593,276 - CSW01_17500 0.32 +0.7
593,305 + CSW01_17500 0.33 +0.3
593,313 - CSW01_17500 0.34 -1.4
593,313 - CSW01_17500 0.34 -0.5
593,313 - CSW01_17500 0.34 +0.5
593,323 - CSW01_17500 0.35 +0.6
593,465 + CSW01_17500 0.43 +0.2
593,473 - CSW01_17500 0.44 +0.8
593,473 - CSW01_17500 0.44 +0.2
593,555 - CSW01_17500 0.49 +0.2
593,611 - CSW01_17500 0.52 -0.2
593,707 + CSW01_17500 0.58 -0.0
593,719 + CSW01_17500 0.59 +0.0
593,727 - CSW01_17500 0.60 +0.1
593,727 - CSW01_17500 0.60 +0.5
593,727 - CSW01_17500 0.60 -0.8
593,728 + CSW01_17500 0.60 -0.6
593,736 - CSW01_17500 0.60 -0.4
593,736 - CSW01_17500 0.60 -0.2
593,749 - CSW01_17500 0.61 +0.4
593,749 - CSW01_17500 0.61 +0.1
593,807 + CSW01_17500 0.65 +0.2
593,809 + CSW01_17500 0.65 +1.6
593,868 + CSW01_17500 0.68 +0.3
593,876 - CSW01_17500 0.69 -0.5
593,890 - CSW01_17500 0.70 -0.9
593,984 - CSW01_17500 0.76 -1.0
594,000 + CSW01_17500 0.77 -1.8
594,000 + CSW01_17500 0.77 +0.3
594,000 + CSW01_17500 0.77 -0.7
594,008 - CSW01_17500 0.77 +0.1
594,106 + CSW01_17500 0.83 -1.4
594,113 - CSW01_17500 0.84 +0.5
594,113 - CSW01_17500 0.84 +0.0
594,114 - CSW01_17500 0.84 +1.1
594,248 + +1.5
594,322 - -0.2
594,407 + +0.5
594,415 - -2.4
594,456 - -0.2
594,591 + -0.1
594,694 - CSW01_17505 0.21 +1.0
594,753 + CSW01_17505 0.31 -1.4
594,799 + CSW01_17505 0.38 -0.2
594,898 - CSW01_17505 0.54 +0.4
595,005 - CSW01_17505 0.71 +0.2
595,011 + CSW01_17505 0.72 +0.6
595,014 + CSW01_17505 0.72 -0.3
595,037 + CSW01_17505 0.76 -1.3
595,045 - CSW01_17505 0.77 -0.2
595,052 + CSW01_17505 0.79 +0.7
595,126 - -0.5
595,359 - -0.8

Or see this region's nucleotide sequence