Experiment: LB_Anaerobic_180MIN_ZN16A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17075 and CSW01_17080 are separated by 7 nucleotides CSW01_17080 and CSW01_17085 are separated by 171 nucleotides CSW01_17085 and CSW01_17090 are separated by 150 nucleotides CSW01_17090 and CSW01_17095 are separated by 206 nucleotides
CSW01_17075: CSW01_17075 - stress response translation initiation inhibitor YciH, at 506,466 to 506,777
_17075
CSW01_17080: CSW01_17080 - DUF3319 domain-containing protein, at 506,785 to 507,168
_17080
CSW01_17085: CSW01_17085 - D-alanine--D-alanine ligase, at 507,340 to 508,344
_17085
CSW01_17090: CSW01_17090 - SPOR domain-containing protein, at 508,495 to 509,082
_17090
CSW01_17095: CSW01_17095 - protein acetyltransferase, at 509,289 to 511,970
_17095
Position (kb) 507
508
509 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 506.520 kb on - strand, within CSW01_17075 at 506.638 kb on - strand, within CSW01_17075 at 506.639 kb on - strand, within CSW01_17075 at 506.737 kb on + strand, within CSW01_17075 at 506.745 kb on - strand, within CSW01_17075 at 507.029 kb on - strand, within CSW01_17080 at 507.052 kb on + strand, within CSW01_17080 at 507.319 kb on + strand at 507.367 kb on - strand at 508.539 kb on + strand at 508.809 kb on + strand, within CSW01_17090 at 508.826 kb on + strand, within CSW01_17090 at 508.826 kb on + strand, within CSW01_17090 at 508.834 kb on - strand, within CSW01_17090 at 508.834 kb on - strand, within CSW01_17090 at 508.908 kb on - strand, within CSW01_17090 at 508.920 kb on + strand, within CSW01_17090 at 508.993 kb on + strand, within CSW01_17090 at 509.008 kb on - strand, within CSW01_17090 at 509.016 kb on - strand, within CSW01_17090 at 509.097 kb on - strand at 509.163 kb on - strand at 509.163 kb on - strand at 509.223 kb on - strand at 509.223 kb on - strand at 509.285 kb on + strand at 509.294 kb on - strand at 509.317 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A remove 506,520 - CSW01_17075 0.17 +0.1 506,638 - CSW01_17075 0.55 +0.1 506,639 - CSW01_17075 0.55 +0.1 506,737 + CSW01_17075 0.87 -0.1 506,745 - CSW01_17075 0.89 -0.9 507,029 - CSW01_17080 0.64 -0.4 507,052 + CSW01_17080 0.70 -0.2 507,319 + -0.7 507,367 - +0.5 508,539 + -0.8 508,809 + CSW01_17090 0.53 -1.4 508,826 + CSW01_17090 0.56 -0.5 508,826 + CSW01_17090 0.56 -0.8 508,834 - CSW01_17090 0.58 +0.2 508,834 - CSW01_17090 0.58 -0.4 508,908 - CSW01_17090 0.70 +0.5 508,920 + CSW01_17090 0.72 -0.3 508,993 + CSW01_17090 0.85 -1.2 509,008 - CSW01_17090 0.87 -2.4 509,016 - CSW01_17090 0.89 -0.5 509,097 - -1.4 509,163 - +0.9 509,163 - -0.2 509,223 - -0.4 509,223 - +3.2 509,285 + +0.5 509,294 - -1.5 509,317 - +1.2
Or see this region's nucleotide sequence