Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15040

Experiment: LB_Anaerobic_180MIN_ZN16A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15035 and CSW01_15040 are separated by 57 nucleotidesCSW01_15040 and CSW01_15045 are separated by 174 nucleotides CSW01_15035: CSW01_15035 - transcriptional regulator, at 225,586 to 227,154 _15035 CSW01_15040: CSW01_15040 - ATP-binding protein, at 227,212 to 229,158 _15040 CSW01_15045: CSW01_15045 - hypothetical protein, at 229,333 to 230,382 _15045 Position (kb) 227 228 229 230Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 226.287 kb on + strand, within CSW01_15035at 226.294 kb on + strand, within CSW01_15035at 226.300 kb on - strand, within CSW01_15035at 226.314 kb on - strand, within CSW01_15035at 226.318 kb on + strand, within CSW01_15035at 226.385 kb on + strand, within CSW01_15035at 226.387 kb on + strand, within CSW01_15035at 226.460 kb on + strand, within CSW01_15035at 226.530 kb on - strand, within CSW01_15035at 226.530 kb on - strand, within CSW01_15035at 226.582 kb on + strand, within CSW01_15035at 226.641 kb on - strand, within CSW01_15035at 226.648 kb on + strand, within CSW01_15035at 226.723 kb on + strand, within CSW01_15035at 226.723 kb on + strand, within CSW01_15035at 226.972 kb on - strand, within CSW01_15035at 227.149 kb on + strandat 227.149 kb on + strandat 227.175 kb on - strandat 227.327 kb on - strandat 227.361 kb on - strandat 227.536 kb on + strand, within CSW01_15040at 227.536 kb on + strand, within CSW01_15040at 227.536 kb on + strand, within CSW01_15040at 227.536 kb on + strand, within CSW01_15040at 227.536 kb on + strand, within CSW01_15040at 227.544 kb on - strand, within CSW01_15040at 227.544 kb on - strand, within CSW01_15040at 227.552 kb on + strand, within CSW01_15040at 227.552 kb on + strand, within CSW01_15040at 227.560 kb on - strand, within CSW01_15040at 227.621 kb on - strand, within CSW01_15040at 227.788 kb on + strand, within CSW01_15040at 227.829 kb on - strand, within CSW01_15040at 227.852 kb on - strand, within CSW01_15040at 227.852 kb on - strand, within CSW01_15040at 227.908 kb on + strand, within CSW01_15040at 227.997 kb on - strand, within CSW01_15040at 228.019 kb on - strand, within CSW01_15040at 228.105 kb on + strand, within CSW01_15040at 228.113 kb on - strand, within CSW01_15040at 228.113 kb on - strand, within CSW01_15040at 228.251 kb on + strand, within CSW01_15040at 228.251 kb on + strand, within CSW01_15040at 228.290 kb on - strand, within CSW01_15040at 228.290 kb on - strand, within CSW01_15040at 228.524 kb on + strand, within CSW01_15040at 228.532 kb on - strand, within CSW01_15040at 228.688 kb on - strand, within CSW01_15040at 228.787 kb on - strand, within CSW01_15040at 228.790 kb on + strand, within CSW01_15040at 228.808 kb on + strand, within CSW01_15040at 228.808 kb on + strand, within CSW01_15040at 228.911 kb on - strand, within CSW01_15040at 228.917 kb on - strand, within CSW01_15040at 228.924 kb on + strand, within CSW01_15040at 229.004 kb on + strandat 229.079 kb on + strandat 229.084 kb on + strandat 229.087 kb on - strandat 229.205 kb on + strandat 229.234 kb on + strandat 229.256 kb on - strandat 229.261 kb on + strandat 229.263 kb on + strandat 229.271 kb on - strandat 229.271 kb on - strandat 229.271 kb on - strandat 229.271 kb on - strandat 229.327 kb on - strandat 229.335 kb on + strandat 229.358 kb on + strandat 229.459 kb on + strand, within CSW01_15045at 229.481 kb on - strand, within CSW01_15045at 229.596 kb on + strand, within CSW01_15045at 229.702 kb on + strand, within CSW01_15045at 229.796 kb on - strand, within CSW01_15045at 229.796 kb on - strand, within CSW01_15045at 229.799 kb on + strand, within CSW01_15045at 229.799 kb on + strand, within CSW01_15045at 229.889 kb on - strand, within CSW01_15045at 229.889 kb on - strand, within CSW01_15045at 230.068 kb on - strand, within CSW01_15045at 230.085 kb on + strand, within CSW01_15045at 230.085 kb on + strand, within CSW01_15045

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
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226,287 + CSW01_15035 0.45 -0.0
226,294 + CSW01_15035 0.45 +1.4
226,300 - CSW01_15035 0.46 +0.1
226,314 - CSW01_15035 0.46 +0.2
226,318 + CSW01_15035 0.47 +0.6
226,385 + CSW01_15035 0.51 +0.3
226,387 + CSW01_15035 0.51 +0.2
226,460 + CSW01_15035 0.56 -0.2
226,530 - CSW01_15035 0.60 +0.8
226,530 - CSW01_15035 0.60 -0.2
226,582 + CSW01_15035 0.63 -0.7
226,641 - CSW01_15035 0.67 -0.5
226,648 + CSW01_15035 0.68 +1.1
226,723 + CSW01_15035 0.72 +0.3
226,723 + CSW01_15035 0.72 -0.1
226,972 - CSW01_15035 0.88 +2.4
227,149 + +0.2
227,149 + -0.3
227,175 - -1.0
227,327 - +0.1
227,361 - +0.2
227,536 + CSW01_15040 0.17 +0.1
227,536 + CSW01_15040 0.17 -0.0
227,536 + CSW01_15040 0.17 -0.5
227,536 + CSW01_15040 0.17 +2.6
227,536 + CSW01_15040 0.17 -0.3
227,544 - CSW01_15040 0.17 -0.7
227,544 - CSW01_15040 0.17 +0.3
227,552 + CSW01_15040 0.17 -0.9
227,552 + CSW01_15040 0.17 +1.2
227,560 - CSW01_15040 0.18 +0.3
227,621 - CSW01_15040 0.21 +0.9
227,788 + CSW01_15040 0.30 +0.3
227,829 - CSW01_15040 0.32 +0.0
227,852 - CSW01_15040 0.33 +0.1
227,852 - CSW01_15040 0.33 +2.7
227,908 + CSW01_15040 0.36 -0.2
227,997 - CSW01_15040 0.40 -0.3
228,019 - CSW01_15040 0.41 -1.8
228,105 + CSW01_15040 0.46 -1.3
228,113 - CSW01_15040 0.46 -0.7
228,113 - CSW01_15040 0.46 +0.2
228,251 + CSW01_15040 0.53 +0.0
228,251 + CSW01_15040 0.53 +0.8
228,290 - CSW01_15040 0.55 -0.6
228,290 - CSW01_15040 0.55 -0.3
228,524 + CSW01_15040 0.67 -0.1
228,532 - CSW01_15040 0.68 -0.4
228,688 - CSW01_15040 0.76 -0.6
228,787 - CSW01_15040 0.81 -0.9
228,790 + CSW01_15040 0.81 -0.0
228,808 + CSW01_15040 0.82 +0.1
228,808 + CSW01_15040 0.82 +0.6
228,911 - CSW01_15040 0.87 -0.3
228,917 - CSW01_15040 0.88 -0.1
228,924 + CSW01_15040 0.88 -1.5
229,004 + -1.3
229,079 + +0.4
229,084 + -0.9
229,087 - +0.3
229,205 + +0.7
229,234 + -0.4
229,256 - +0.3
229,261 + -2.3
229,263 + +1.3
229,271 - +0.8
229,271 - +1.8
229,271 - +0.4
229,271 - -0.5
229,327 - +1.7
229,335 + +1.0
229,358 + -0.3
229,459 + CSW01_15045 0.12 +0.4
229,481 - CSW01_15045 0.14 +0.6
229,596 + CSW01_15045 0.25 +0.7
229,702 + CSW01_15045 0.35 +0.1
229,796 - CSW01_15045 0.44 +0.7
229,796 - CSW01_15045 0.44 +0.2
229,799 + CSW01_15045 0.44 -2.1
229,799 + CSW01_15045 0.44 +0.0
229,889 - CSW01_15045 0.53 -0.6
229,889 - CSW01_15045 0.53 +0.8
230,068 - CSW01_15045 0.70 +0.0
230,085 + CSW01_15045 0.72 +4.1
230,085 + CSW01_15045 0.72 -0.6

Or see this region's nucleotide sequence