Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14245

Experiment: LB_Anaerobic_180MIN_ZN16A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14235 and CSW01_14240 are separated by 13 nucleotidesCSW01_14240 and CSW01_14245 overlap by 4 nucleotidesCSW01_14245 and CSW01_14250 are separated by 198 nucleotides CSW01_14235: CSW01_14235 - copper chaperone PCu(A)C, at 45,637 to 46,089 _14235 CSW01_14240: CSW01_14240 - SCO family protein, at 46,103 to 46,684 _14240 CSW01_14245: CSW01_14245 - hypothetical protein, at 46,681 to 47,103 _14245 CSW01_14250: CSW01_14250 - DUF368 domain-containing protein, at 47,302 to 48,228 _14250 Position (kb) 46 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 45.788 kb on - strand, within CSW01_14235at 45.811 kb on + strand, within CSW01_14235at 45.883 kb on - strand, within CSW01_14235at 45.921 kb on - strand, within CSW01_14235at 45.933 kb on + strand, within CSW01_14235at 45.933 kb on + strand, within CSW01_14235at 46.033 kb on + strand, within CSW01_14235at 46.213 kb on + strand, within CSW01_14240at 46.221 kb on - strand, within CSW01_14240at 46.229 kb on - strand, within CSW01_14240at 46.389 kb on - strand, within CSW01_14240at 46.391 kb on + strand, within CSW01_14240at 46.391 kb on + strand, within CSW01_14240at 46.436 kb on + strand, within CSW01_14240at 46.436 kb on + strand, within CSW01_14240at 46.436 kb on + strand, within CSW01_14240at 46.444 kb on - strand, within CSW01_14240at 46.444 kb on - strand, within CSW01_14240at 46.477 kb on + strand, within CSW01_14240at 46.477 kb on + strand, within CSW01_14240at 46.477 kb on + strand, within CSW01_14240at 46.485 kb on - strand, within CSW01_14240at 46.485 kb on - strand, within CSW01_14240at 46.485 kb on - strand, within CSW01_14240at 46.497 kb on - strand, within CSW01_14240at 46.571 kb on + strand, within CSW01_14240at 46.571 kb on + strand, within CSW01_14240at 46.576 kb on + strand, within CSW01_14240at 46.581 kb on + strand, within CSW01_14240at 46.589 kb on - strand, within CSW01_14240at 46.589 kb on - strand, within CSW01_14240at 46.712 kb on - strandat 46.787 kb on + strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.797 kb on - strand, within CSW01_14245at 46.902 kb on - strand, within CSW01_14245at 46.928 kb on + strand, within CSW01_14245at 46.945 kb on + strand, within CSW01_14245at 47.095 kb on + strandat 47.129 kb on + strandat 47.261 kb on - strandat 47.283 kb on - strandat 47.286 kb on + strandat 47.656 kb on + strand, within CSW01_14250at 47.874 kb on + strand, within CSW01_14250at 48.067 kb on + strand, within CSW01_14250

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
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45,788 - CSW01_14235 0.33 -0.4
45,811 + CSW01_14235 0.38 +1.3
45,883 - CSW01_14235 0.54 +0.1
45,921 - CSW01_14235 0.63 -1.6
45,933 + CSW01_14235 0.65 -0.8
45,933 + CSW01_14235 0.65 +0.6
46,033 + CSW01_14235 0.87 +0.1
46,213 + CSW01_14240 0.19 +0.2
46,221 - CSW01_14240 0.20 -0.2
46,229 - CSW01_14240 0.22 -0.4
46,389 - CSW01_14240 0.49 +0.3
46,391 + CSW01_14240 0.49 -0.5
46,391 + CSW01_14240 0.49 +1.3
46,436 + CSW01_14240 0.57 -0.2
46,436 + CSW01_14240 0.57 +0.3
46,436 + CSW01_14240 0.57 -0.2
46,444 - CSW01_14240 0.59 +0.1
46,444 - CSW01_14240 0.59 +1.5
46,477 + CSW01_14240 0.64 +2.5
46,477 + CSW01_14240 0.64 +0.1
46,477 + CSW01_14240 0.64 +0.7
46,485 - CSW01_14240 0.66 -2.4
46,485 - CSW01_14240 0.66 -0.4
46,485 - CSW01_14240 0.66 -0.4
46,497 - CSW01_14240 0.68 +0.9
46,571 + CSW01_14240 0.80 -0.2
46,571 + CSW01_14240 0.80 -0.5
46,576 + CSW01_14240 0.81 -0.3
46,581 + CSW01_14240 0.82 -1.5
46,589 - CSW01_14240 0.84 +1.4
46,589 - CSW01_14240 0.84 -0.6
46,712 - -0.2
46,787 + CSW01_14245 0.25 -0.9
46,797 - CSW01_14245 0.27 +0.3
46,797 - CSW01_14245 0.27 -0.6
46,797 - CSW01_14245 0.27 +1.9
46,797 - CSW01_14245 0.27 -0.2
46,797 - CSW01_14245 0.27 -0.3
46,797 - CSW01_14245 0.27 +1.6
46,902 - CSW01_14245 0.52 +0.1
46,928 + CSW01_14245 0.58 +1.9
46,945 + CSW01_14245 0.62 -0.7
47,095 + -1.1
47,129 + -0.2
47,261 - -1.3
47,283 - -0.3
47,286 + +0.5
47,656 + CSW01_14250 0.38 +0.3
47,874 + CSW01_14250 0.62 -0.1
48,067 + CSW01_14250 0.83 -0.1

Or see this region's nucleotide sequence