Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_09155

Experiment: LB_Anaerobic_180MIN_ZN16A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_09150 and CSW01_09155 are separated by 371 nucleotidesCSW01_09155 and CSW01_09160 are separated by 115 nucleotides CSW01_09150: CSW01_09150 - AraC family transcriptional regulator, at 1,964,951 to 1,965,790 _09150 CSW01_09155: CSW01_09155 - PTS fructose transporter subunit IIC, at 1,966,162 to 1,968,063 _09155 CSW01_09160: CSW01_09160 - mannose-6-phosphate isomerase, class I, at 1,968,179 to 1,969,345 _09160 Position (kb) 1966 1967 1968 1969Strain fitness (log2 ratio) -1 0 1 2at 1965.273 kb on - strand, within CSW01_09150at 1965.305 kb on + strand, within CSW01_09150at 1965.373 kb on + strand, within CSW01_09150at 1965.373 kb on + strand, within CSW01_09150at 1965.373 kb on + strand, within CSW01_09150at 1965.373 kb on + strand, within CSW01_09150at 1965.381 kb on - strand, within CSW01_09150at 1965.395 kb on + strand, within CSW01_09150at 1965.398 kb on - strand, within CSW01_09150at 1965.422 kb on + strand, within CSW01_09150at 1965.422 kb on + strand, within CSW01_09150at 1965.455 kb on - strand, within CSW01_09150at 1965.515 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.518 kb on + strand, within CSW01_09150at 1965.523 kb on + strand, within CSW01_09150at 1965.523 kb on + strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.526 kb on - strand, within CSW01_09150at 1965.531 kb on - strand, within CSW01_09150at 1965.538 kb on - strand, within CSW01_09150at 1965.555 kb on + strand, within CSW01_09150at 1965.563 kb on - strand, within CSW01_09150at 1965.593 kb on - strand, within CSW01_09150at 1965.620 kb on + strand, within CSW01_09150at 1965.646 kb on + strand, within CSW01_09150at 1965.651 kb on + strand, within CSW01_09150at 1965.664 kb on + strand, within CSW01_09150at 1965.761 kb on - strandat 1965.761 kb on - strandat 1965.805 kb on - strandat 1965.832 kb on + strandat 1965.832 kb on + strandat 1965.832 kb on + strandat 1965.832 kb on + strandat 1965.835 kb on - strandat 1965.840 kb on - strandat 1965.840 kb on - strandat 1965.840 kb on - strandat 1965.840 kb on - strandat 1965.840 kb on - strandat 1965.840 kb on - strandat 1965.840 kb on - strandat 1965.840 kb on - strandat 1965.855 kb on - strandat 1965.857 kb on + strandat 1965.857 kb on + strandat 1965.857 kb on + strandat 1965.862 kb on + strandat 1965.867 kb on + strandat 1965.867 kb on + strandat 1965.867 kb on + strandat 1965.875 kb on - strandat 1965.875 kb on - strandat 1965.875 kb on - strandat 1965.875 kb on - strandat 1965.875 kb on - strandat 1965.875 kb on - strandat 1965.879 kb on + strandat 1965.887 kb on - strandat 1965.892 kb on - strandat 1966.055 kb on - strandat 1966.076 kb on - strandat 1966.148 kb on + strandat 1966.148 kb on + strandat 1966.153 kb on - strandat 1966.155 kb on + strandat 1966.184 kb on - strandat 1966.189 kb on - strandat 1966.315 kb on + strandat 1966.359 kb on + strand, within CSW01_09155at 1966.359 kb on + strand, within CSW01_09155at 1966.367 kb on - strand, within CSW01_09155at 1966.367 kb on - strand, within CSW01_09155at 1966.372 kb on + strand, within CSW01_09155at 1966.380 kb on - strand, within CSW01_09155at 1966.380 kb on - strand, within CSW01_09155at 1966.385 kb on - strand, within CSW01_09155at 1966.414 kb on + strand, within CSW01_09155at 1966.414 kb on - strand, within CSW01_09155at 1966.415 kb on - strand, within CSW01_09155at 1966.520 kb on + strand, within CSW01_09155at 1966.528 kb on - strand, within CSW01_09155at 1966.528 kb on - strand, within CSW01_09155at 1966.528 kb on - strand, within CSW01_09155at 1966.549 kb on - strand, within CSW01_09155at 1966.653 kb on - strand, within CSW01_09155at 1966.689 kb on + strand, within CSW01_09155at 1966.689 kb on + strand, within CSW01_09155at 1966.689 kb on + strand, within CSW01_09155at 1966.697 kb on - strand, within CSW01_09155at 1966.697 kb on - strand, within CSW01_09155at 1966.729 kb on + strand, within CSW01_09155at 1967.087 kb on + strand, within CSW01_09155at 1967.118 kb on + strand, within CSW01_09155at 1967.118 kb on + strand, within CSW01_09155at 1967.249 kb on - strand, within CSW01_09155at 1967.301 kb on + strand, within CSW01_09155at 1967.305 kb on + strand, within CSW01_09155at 1967.309 kb on - strand, within CSW01_09155at 1967.407 kb on - strand, within CSW01_09155at 1967.407 kb on - strand, within CSW01_09155at 1967.437 kb on - strand, within CSW01_09155at 1967.534 kb on + strand, within CSW01_09155at 1967.542 kb on - strand, within CSW01_09155at 1967.749 kb on - strand, within CSW01_09155at 1967.758 kb on + strand, within CSW01_09155at 1967.765 kb on - strand, within CSW01_09155at 1967.793 kb on + strand, within CSW01_09155at 1967.818 kb on + strand, within CSW01_09155at 1967.866 kb on - strand, within CSW01_09155at 1967.896 kb on - strandat 1967.928 kb on - strandat 1967.937 kb on + strandat 1967.954 kb on + strandat 1968.001 kb on + strandat 1968.001 kb on + strandat 1968.008 kb on + strandat 1968.009 kb on - strandat 1968.009 kb on - strandat 1968.009 kb on - strandat 1968.090 kb on - strandat 1968.189 kb on - strandat 1968.262 kb on + strandat 1968.262 kb on + strandat 1968.300 kb on - strand, within CSW01_09160at 1968.497 kb on - strand, within CSW01_09160at 1968.520 kb on + strand, within CSW01_09160at 1968.528 kb on - strand, within CSW01_09160at 1968.661 kb on + strand, within CSW01_09160at 1968.766 kb on + strand, within CSW01_09160at 1968.869 kb on + strand, within CSW01_09160at 1968.869 kb on + strand, within CSW01_09160at 1968.869 kb on + strand, within CSW01_09160at 1968.904 kb on - strand, within CSW01_09160at 1968.951 kb on + strand, within CSW01_09160at 1968.951 kb on + strand, within CSW01_09160at 1968.951 kb on + strand, within CSW01_09160at 1968.951 kb on + strand, within CSW01_09160at 1968.959 kb on - strand, within CSW01_09160at 1968.964 kb on + strand, within CSW01_09160at 1969.048 kb on + strand, within CSW01_09160

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
remove
1,965,273 - CSW01_09150 0.38 -0.4
1,965,305 + CSW01_09150 0.42 -0.2
1,965,373 + CSW01_09150 0.50 +0.3
1,965,373 + CSW01_09150 0.50 -0.3
1,965,373 + CSW01_09150 0.50 +0.4
1,965,373 + CSW01_09150 0.50 -0.1
1,965,381 - CSW01_09150 0.51 +0.3
1,965,395 + CSW01_09150 0.53 -0.1
1,965,398 - CSW01_09150 0.53 -0.4
1,965,422 + CSW01_09150 0.56 +0.1
1,965,422 + CSW01_09150 0.56 -0.3
1,965,455 - CSW01_09150 0.60 +0.7
1,965,515 + CSW01_09150 0.67 -0.0
1,965,518 + CSW01_09150 0.68 -0.0
1,965,518 + CSW01_09150 0.68 -0.1
1,965,518 + CSW01_09150 0.68 -0.0
1,965,518 + CSW01_09150 0.68 -0.3
1,965,518 + CSW01_09150 0.68 +0.8
1,965,518 + CSW01_09150 0.68 +0.4
1,965,518 + CSW01_09150 0.68 +0.3
1,965,518 + CSW01_09150 0.68 +1.5
1,965,518 + CSW01_09150 0.68 -0.5
1,965,518 + CSW01_09150 0.68 +0.8
1,965,518 + CSW01_09150 0.68 +0.8
1,965,518 + CSW01_09150 0.68 +0.0
1,965,518 + CSW01_09150 0.68 +0.8
1,965,518 + CSW01_09150 0.68 +0.4
1,965,523 + CSW01_09150 0.68 +0.3
1,965,523 + CSW01_09150 0.68 +0.1
1,965,526 - CSW01_09150 0.68 +0.2
1,965,526 - CSW01_09150 0.68 -0.1
1,965,526 - CSW01_09150 0.68 -0.4
1,965,526 - CSW01_09150 0.68 -1.2
1,965,526 - CSW01_09150 0.68 +0.5
1,965,526 - CSW01_09150 0.68 +0.3
1,965,526 - CSW01_09150 0.68 +0.0
1,965,526 - CSW01_09150 0.68 +1.2
1,965,526 - CSW01_09150 0.68 -1.7
1,965,526 - CSW01_09150 0.68 +0.3
1,965,526 - CSW01_09150 0.68 +1.2
1,965,531 - CSW01_09150 0.69 -0.3
1,965,538 - CSW01_09150 0.70 +0.1
1,965,555 + CSW01_09150 0.72 +1.8
1,965,563 - CSW01_09150 0.73 +0.8
1,965,593 - CSW01_09150 0.76 -0.5
1,965,620 + CSW01_09150 0.80 +0.1
1,965,646 + CSW01_09150 0.83 +0.3
1,965,651 + CSW01_09150 0.83 +0.2
1,965,664 + CSW01_09150 0.85 -1.2
1,965,761 - -0.7
1,965,761 - +1.1
1,965,805 - -0.4
1,965,832 + +0.3
1,965,832 + +0.8
1,965,832 + -0.9
1,965,832 + +0.7
1,965,835 - +0.2
1,965,840 - -0.2
1,965,840 - -0.3
1,965,840 - -0.4
1,965,840 - -0.1
1,965,840 - +0.1
1,965,840 - -0.0
1,965,840 - +0.4
1,965,840 - -0.2
1,965,855 - -0.3
1,965,857 + +0.4
1,965,857 + -0.3
1,965,857 + +1.1
1,965,862 + +0.6
1,965,867 + +0.5
1,965,867 + -0.8
1,965,867 + +0.1
1,965,875 - +0.7
1,965,875 - -0.4
1,965,875 - -0.9
1,965,875 - +1.5
1,965,875 - -0.5
1,965,875 - +1.1
1,965,879 + -0.4
1,965,887 - +0.5
1,965,892 - -0.6
1,966,055 - -0.0
1,966,076 - -0.3
1,966,148 + +0.4
1,966,148 + -0.2
1,966,153 - +0.3
1,966,155 + +0.6
1,966,184 - +0.1
1,966,189 - +0.8
1,966,315 + -0.1
1,966,359 + CSW01_09155 0.10 +0.4
1,966,359 + CSW01_09155 0.10 -1.1
1,966,367 - CSW01_09155 0.11 +0.5
1,966,367 - CSW01_09155 0.11 -0.2
1,966,372 + CSW01_09155 0.11 +0.3
1,966,380 - CSW01_09155 0.11 +0.3
1,966,380 - CSW01_09155 0.11 +0.3
1,966,385 - CSW01_09155 0.12 +0.4
1,966,414 + CSW01_09155 0.13 +0.0
1,966,414 - CSW01_09155 0.13 -0.5
1,966,415 - CSW01_09155 0.13 +0.4
1,966,520 + CSW01_09155 0.19 +1.1
1,966,528 - CSW01_09155 0.19 -1.4
1,966,528 - CSW01_09155 0.19 +0.2
1,966,528 - CSW01_09155 0.19 +0.7
1,966,549 - CSW01_09155 0.20 +0.6
1,966,653 - CSW01_09155 0.26 +0.5
1,966,689 + CSW01_09155 0.28 -0.9
1,966,689 + CSW01_09155 0.28 -0.2
1,966,689 + CSW01_09155 0.28 +0.1
1,966,697 - CSW01_09155 0.28 -0.5
1,966,697 - CSW01_09155 0.28 +0.3
1,966,729 + CSW01_09155 0.30 +0.5
1,967,087 + CSW01_09155 0.49 -0.2
1,967,118 + CSW01_09155 0.50 +0.5
1,967,118 + CSW01_09155 0.50 +0.1
1,967,249 - CSW01_09155 0.57 +0.0
1,967,301 + CSW01_09155 0.60 +0.7
1,967,305 + CSW01_09155 0.60 +0.5
1,967,309 - CSW01_09155 0.60 +0.2
1,967,407 - CSW01_09155 0.65 +0.1
1,967,407 - CSW01_09155 0.65 +0.1
1,967,437 - CSW01_09155 0.67 +0.9
1,967,534 + CSW01_09155 0.72 +0.4
1,967,542 - CSW01_09155 0.73 +0.8
1,967,749 - CSW01_09155 0.83 -0.0
1,967,758 + CSW01_09155 0.84 +1.2
1,967,765 - CSW01_09155 0.84 +0.7
1,967,793 + CSW01_09155 0.86 +1.1
1,967,818 + CSW01_09155 0.87 -0.4
1,967,866 - CSW01_09155 0.90 +1.0
1,967,896 - +0.7
1,967,928 - -1.5
1,967,937 + +0.2
1,967,954 + +0.8
1,968,001 + +0.6
1,968,001 + -0.5
1,968,008 + -0.1
1,968,009 - +1.0
1,968,009 - +0.2
1,968,009 - +1.2
1,968,090 - +0.7
1,968,189 - +0.7
1,968,262 + -0.2
1,968,262 + +0.6
1,968,300 - CSW01_09160 0.10 -0.3
1,968,497 - CSW01_09160 0.27 +1.2
1,968,520 + CSW01_09160 0.29 -0.4
1,968,528 - CSW01_09160 0.30 -0.1
1,968,661 + CSW01_09160 0.41 +0.6
1,968,766 + CSW01_09160 0.50 -1.0
1,968,869 + CSW01_09160 0.59 +0.1
1,968,869 + CSW01_09160 0.59 +1.1
1,968,869 + CSW01_09160 0.59 -0.3
1,968,904 - CSW01_09160 0.62 -0.1
1,968,951 + CSW01_09160 0.66 -0.5
1,968,951 + CSW01_09160 0.66 -0.1
1,968,951 + CSW01_09160 0.66 -0.1
1,968,951 + CSW01_09160 0.66 +0.8
1,968,959 - CSW01_09160 0.67 +0.9
1,968,964 + CSW01_09160 0.67 -0.5
1,969,048 + CSW01_09160 0.74 -0.3

Or see this region's nucleotide sequence