Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07165

Experiment: LB_Anaerobic_180MIN_ZN16A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07160 and CSW01_07165 are separated by 285 nucleotidesCSW01_07165 and CSW01_07170 overlap by 11 nucleotidesCSW01_07170 and CSW01_07175 are separated by 1 nucleotides CSW01_07160: CSW01_07160 - spermidine/putrescine ABC transporter ATP-binding protein, at 1,524,537 to 1,525,670 _07160 CSW01_07165: CSW01_07165 - hypothetical protein, at 1,525,956 to 1,526,801 _07165 CSW01_07170: CSW01_07170 - glucosaminidase, at 1,526,791 to 1,527,594 _07170 CSW01_07175: CSW01_07175 - DUF2987 domain-containing protein, at 1,527,596 to 1,528,255 _07175 Position (kb) 1525 1526 1527Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1525.027 kb on + strand, within CSW01_07160at 1525.179 kb on + strand, within CSW01_07160at 1525.237 kb on + strand, within CSW01_07160at 1525.237 kb on + strand, within CSW01_07160at 1525.245 kb on - strand, within CSW01_07160at 1525.245 kb on - strand, within CSW01_07160at 1525.245 kb on - strand, within CSW01_07160at 1525.245 kb on - strand, within CSW01_07160at 1525.334 kb on - strand, within CSW01_07160at 1525.373 kb on + strand, within CSW01_07160at 1525.393 kb on + strand, within CSW01_07160at 1525.558 kb on + strandat 1525.842 kb on - strandat 1526.026 kb on - strandat 1526.031 kb on - strandat 1526.209 kb on + strand, within CSW01_07165at 1526.217 kb on - strand, within CSW01_07165at 1526.232 kb on - strand, within CSW01_07165at 1526.246 kb on + strand, within CSW01_07165at 1526.253 kb on + strand, within CSW01_07165at 1526.413 kb on + strand, within CSW01_07165at 1526.431 kb on - strand, within CSW01_07165at 1526.637 kb on + strand, within CSW01_07165at 1526.647 kb on + strand, within CSW01_07165at 1526.652 kb on + strand, within CSW01_07165at 1526.658 kb on + strand, within CSW01_07165at 1526.666 kb on - strand, within CSW01_07165at 1526.666 kb on - strand, within CSW01_07165at 1526.671 kb on - strand, within CSW01_07165at 1526.755 kb on - strandat 1526.810 kb on + strandat 1526.903 kb on + strand, within CSW01_07170at 1526.903 kb on + strand, within CSW01_07170at 1526.903 kb on + strand, within CSW01_07170at 1526.903 kb on + strand, within CSW01_07170at 1526.903 kb on + strand, within CSW01_07170at 1526.903 kb on + strand, within CSW01_07170at 1526.911 kb on - strand, within CSW01_07170at 1526.989 kb on - strand, within CSW01_07170at 1527.201 kb on - strand, within CSW01_07170at 1527.272 kb on + strand, within CSW01_07170at 1527.305 kb on + strand, within CSW01_07170at 1527.348 kb on + strand, within CSW01_07170at 1527.503 kb on - strand, within CSW01_07170at 1527.766 kb on + strand, within CSW01_07175

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
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1,525,027 + CSW01_07160 0.43 -0.8
1,525,179 + CSW01_07160 0.57 +0.5
1,525,237 + CSW01_07160 0.62 -1.0
1,525,237 + CSW01_07160 0.62 -0.7
1,525,245 - CSW01_07160 0.62 +0.1
1,525,245 - CSW01_07160 0.62 +0.2
1,525,245 - CSW01_07160 0.62 -3.3
1,525,245 - CSW01_07160 0.62 -1.6
1,525,334 - CSW01_07160 0.70 -0.8
1,525,373 + CSW01_07160 0.74 -0.9
1,525,393 + CSW01_07160 0.75 -2.9
1,525,558 + +0.0
1,525,842 - -0.5
1,526,026 - -1.4
1,526,031 - -0.1
1,526,209 + CSW01_07165 0.30 +0.2
1,526,217 - CSW01_07165 0.31 +0.0
1,526,232 - CSW01_07165 0.33 -0.1
1,526,246 + CSW01_07165 0.34 +1.3
1,526,253 + CSW01_07165 0.35 +0.5
1,526,413 + CSW01_07165 0.54 +0.4
1,526,431 - CSW01_07165 0.56 +2.3
1,526,637 + CSW01_07165 0.80 -0.5
1,526,647 + CSW01_07165 0.82 -0.4
1,526,652 + CSW01_07165 0.82 +0.1
1,526,658 + CSW01_07165 0.83 +0.3
1,526,666 - CSW01_07165 0.84 +0.2
1,526,666 - CSW01_07165 0.84 +0.3
1,526,671 - CSW01_07165 0.85 -0.2
1,526,755 - +1.1
1,526,810 + +1.3
1,526,903 + CSW01_07170 0.14 +0.3
1,526,903 + CSW01_07170 0.14 +1.1
1,526,903 + CSW01_07170 0.14 -0.1
1,526,903 + CSW01_07170 0.14 +0.2
1,526,903 + CSW01_07170 0.14 +0.1
1,526,903 + CSW01_07170 0.14 -1.1
1,526,911 - CSW01_07170 0.15 +0.0
1,526,989 - CSW01_07170 0.25 +0.3
1,527,201 - CSW01_07170 0.51 -0.3
1,527,272 + CSW01_07170 0.60 -0.3
1,527,305 + CSW01_07170 0.64 -0.9
1,527,348 + CSW01_07170 0.69 +0.5
1,527,503 - CSW01_07170 0.89 -0.2
1,527,766 + CSW01_07175 0.26 +0.8

Or see this region's nucleotide sequence