Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05750

Experiment: LB_Anaerobic_180MIN_ZN16A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05745 and CSW01_05750 are separated by 4 nucleotidesCSW01_05750 and CSW01_05755 are separated by 3 nucleotides CSW01_05745: CSW01_05745 - ATP phosphoribosyltransferase, at 1,200,020 to 1,200,916 _05745 CSW01_05750: CSW01_05750 - histidinol dehydrogenase, at 1,200,921 to 1,202,216 _05750 CSW01_05755: CSW01_05755 - histidinol-phosphate transaminase, at 1,202,220 to 1,203,260 _05755 Position (kb) 1200 1201 1202 1203Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1200.210 kb on - strand, within CSW01_05745at 1200.265 kb on - strand, within CSW01_05745at 1200.267 kb on + strand, within CSW01_05745at 1200.275 kb on - strand, within CSW01_05745at 1200.408 kb on + strand, within CSW01_05745at 1200.408 kb on + strand, within CSW01_05745at 1200.408 kb on + strand, within CSW01_05745at 1200.416 kb on - strand, within CSW01_05745at 1200.416 kb on - strand, within CSW01_05745at 1200.416 kb on - strand, within CSW01_05745at 1200.416 kb on - strand, within CSW01_05745at 1200.418 kb on + strand, within CSW01_05745at 1200.426 kb on - strand, within CSW01_05745at 1200.433 kb on - strand, within CSW01_05745at 1200.491 kb on - strand, within CSW01_05745at 1200.500 kb on + strand, within CSW01_05745at 1200.500 kb on + strand, within CSW01_05745at 1200.508 kb on - strand, within CSW01_05745at 1200.508 kb on - strand, within CSW01_05745at 1200.521 kb on + strand, within CSW01_05745at 1200.558 kb on - strand, within CSW01_05745at 1200.566 kb on - strand, within CSW01_05745at 1200.633 kb on + strand, within CSW01_05745at 1200.641 kb on - strand, within CSW01_05745at 1200.662 kb on + strand, within CSW01_05745at 1200.719 kb on + strand, within CSW01_05745at 1200.736 kb on + strand, within CSW01_05745at 1200.811 kb on + strand, within CSW01_05745at 1200.846 kb on + strandat 1200.856 kb on + strandat 1200.856 kb on + strandat 1200.864 kb on - strandat 1200.911 kb on + strandat 1201.053 kb on - strand, within CSW01_05750at 1201.057 kb on - strand, within CSW01_05750at 1201.057 kb on - strand, within CSW01_05750at 1201.062 kb on - strand, within CSW01_05750at 1201.133 kb on - strand, within CSW01_05750at 1201.182 kb on + strand, within CSW01_05750at 1201.301 kb on - strand, within CSW01_05750at 1201.388 kb on + strand, within CSW01_05750at 1201.388 kb on + strand, within CSW01_05750at 1201.396 kb on - strand, within CSW01_05750at 1201.396 kb on - strand, within CSW01_05750at 1201.426 kb on + strand, within CSW01_05750at 1201.444 kb on - strand, within CSW01_05750at 1201.460 kb on - strand, within CSW01_05750at 1201.460 kb on - strand, within CSW01_05750at 1201.490 kb on + strand, within CSW01_05750at 1201.490 kb on + strand, within CSW01_05750at 1201.498 kb on - strand, within CSW01_05750at 1201.626 kb on + strand, within CSW01_05750at 1201.634 kb on - strand, within CSW01_05750at 1201.682 kb on - strand, within CSW01_05750at 1201.700 kb on - strand, within CSW01_05750at 1201.745 kb on - strand, within CSW01_05750at 1201.775 kb on + strand, within CSW01_05750at 1201.852 kb on + strand, within CSW01_05750at 1201.882 kb on + strand, within CSW01_05750at 1201.951 kb on + strand, within CSW01_05750at 1202.063 kb on - strand, within CSW01_05750at 1202.075 kb on + strand, within CSW01_05750at 1202.083 kb on - strand, within CSW01_05750at 1202.083 kb on - strand, within CSW01_05750at 1202.085 kb on + strand, within CSW01_05750at 1202.094 kb on - strandat 1202.155 kb on + strandat 1202.155 kb on + strandat 1202.155 kb on + strandat 1202.155 kb on + strandat 1202.163 kb on - strandat 1202.163 kb on - strandat 1202.163 kb on - strandat 1202.163 kb on - strandat 1202.178 kb on - strandat 1202.186 kb on - strandat 1202.265 kb on - strandat 1202.306 kb on - strandat 1202.365 kb on - strand, within CSW01_05755at 1202.365 kb on - strand, within CSW01_05755at 1202.365 kb on - strand, within CSW01_05755at 1202.389 kb on - strand, within CSW01_05755at 1202.393 kb on + strand, within CSW01_05755at 1202.393 kb on + strand, within CSW01_05755at 1202.472 kb on + strand, within CSW01_05755at 1202.472 kb on - strand, within CSW01_05755at 1202.514 kb on - strand, within CSW01_05755at 1202.516 kb on + strand, within CSW01_05755at 1202.631 kb on + strand, within CSW01_05755at 1202.727 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.840 kb on + strand, within CSW01_05755at 1202.848 kb on - strand, within CSW01_05755at 1202.848 kb on - strand, within CSW01_05755at 1202.848 kb on - strand, within CSW01_05755at 1202.862 kb on + strand, within CSW01_05755at 1202.870 kb on - strand, within CSW01_05755at 1202.870 kb on - strand, within CSW01_05755at 1202.893 kb on - strand, within CSW01_05755at 1202.898 kb on - strand, within CSW01_05755at 1202.972 kb on - strand, within CSW01_05755at 1202.980 kb on - strand, within CSW01_05755at 1202.996 kb on + strand, within CSW01_05755at 1203.017 kb on - strand, within CSW01_05755at 1203.055 kb on + strand, within CSW01_05755at 1203.121 kb on + strand, within CSW01_05755at 1203.129 kb on - strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.131 kb on + strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.139 kb on - strand, within CSW01_05755at 1203.150 kb on - strand, within CSW01_05755

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
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1,200,210 - CSW01_05745 0.21 +0.2
1,200,265 - CSW01_05745 0.27 +1.1
1,200,267 + CSW01_05745 0.28 +0.1
1,200,275 - CSW01_05745 0.28 -2.8
1,200,408 + CSW01_05745 0.43 +0.3
1,200,408 + CSW01_05745 0.43 -0.2
1,200,408 + CSW01_05745 0.43 -0.6
1,200,416 - CSW01_05745 0.44 -0.3
1,200,416 - CSW01_05745 0.44 -1.3
1,200,416 - CSW01_05745 0.44 -0.2
1,200,416 - CSW01_05745 0.44 -0.1
1,200,418 + CSW01_05745 0.44 +0.9
1,200,426 - CSW01_05745 0.45 +0.1
1,200,433 - CSW01_05745 0.46 +0.2
1,200,491 - CSW01_05745 0.53 -0.7
1,200,500 + CSW01_05745 0.54 +1.9
1,200,500 + CSW01_05745 0.54 +0.5
1,200,508 - CSW01_05745 0.54 -1.1
1,200,508 - CSW01_05745 0.54 -1.0
1,200,521 + CSW01_05745 0.56 +1.2
1,200,558 - CSW01_05745 0.60 +1.0
1,200,566 - CSW01_05745 0.61 +0.9
1,200,633 + CSW01_05745 0.68 -0.4
1,200,641 - CSW01_05745 0.69 -0.6
1,200,662 + CSW01_05745 0.72 -0.8
1,200,719 + CSW01_05745 0.78 -0.2
1,200,736 + CSW01_05745 0.80 -0.2
1,200,811 + CSW01_05745 0.88 -0.5
1,200,846 + +0.2
1,200,856 + +0.8
1,200,856 + +0.4
1,200,864 - -0.2
1,200,911 + +1.2
1,201,053 - CSW01_05750 0.10 +0.2
1,201,057 - CSW01_05750 0.10 -0.5
1,201,057 - CSW01_05750 0.10 -0.3
1,201,062 - CSW01_05750 0.11 +1.2
1,201,133 - CSW01_05750 0.16 -0.2
1,201,182 + CSW01_05750 0.20 +0.1
1,201,301 - CSW01_05750 0.29 -0.2
1,201,388 + CSW01_05750 0.36 +0.1
1,201,388 + CSW01_05750 0.36 -0.6
1,201,396 - CSW01_05750 0.37 -0.1
1,201,396 - CSW01_05750 0.37 +0.4
1,201,426 + CSW01_05750 0.39 +0.6
1,201,444 - CSW01_05750 0.40 -0.2
1,201,460 - CSW01_05750 0.42 -0.1
1,201,460 - CSW01_05750 0.42 -1.3
1,201,490 + CSW01_05750 0.44 -0.5
1,201,490 + CSW01_05750 0.44 +0.4
1,201,498 - CSW01_05750 0.45 -0.2
1,201,626 + CSW01_05750 0.54 +0.4
1,201,634 - CSW01_05750 0.55 +0.3
1,201,682 - CSW01_05750 0.59 -0.8
1,201,700 - CSW01_05750 0.60 -0.2
1,201,745 - CSW01_05750 0.64 -0.3
1,201,775 + CSW01_05750 0.66 +0.2
1,201,852 + CSW01_05750 0.72 -1.0
1,201,882 + CSW01_05750 0.74 +0.1
1,201,951 + CSW01_05750 0.79 +2.4
1,202,063 - CSW01_05750 0.88 +0.6
1,202,075 + CSW01_05750 0.89 +1.2
1,202,083 - CSW01_05750 0.90 -0.1
1,202,083 - CSW01_05750 0.90 -0.2
1,202,085 + CSW01_05750 0.90 +1.2
1,202,094 - +0.1
1,202,155 + +3.1
1,202,155 + +0.6
1,202,155 + +0.2
1,202,155 + +1.1
1,202,163 - -0.2
1,202,163 - +1.2
1,202,163 - +0.1
1,202,163 - +0.3
1,202,178 - +1.0
1,202,186 - +0.1
1,202,265 - +0.3
1,202,306 - -0.6
1,202,365 - CSW01_05755 0.14 +0.2
1,202,365 - CSW01_05755 0.14 +0.1
1,202,365 - CSW01_05755 0.14 +0.3
1,202,389 - CSW01_05755 0.16 -0.3
1,202,393 + CSW01_05755 0.17 -0.3
1,202,393 + CSW01_05755 0.17 -0.9
1,202,472 + CSW01_05755 0.24 +0.2
1,202,472 - CSW01_05755 0.24 +0.3
1,202,514 - CSW01_05755 0.28 -0.4
1,202,516 + CSW01_05755 0.28 -1.0
1,202,631 + CSW01_05755 0.39 +2.7
1,202,727 + CSW01_05755 0.49 -1.1
1,202,840 + CSW01_05755 0.60 +0.6
1,202,840 + CSW01_05755 0.60 +0.9
1,202,840 + CSW01_05755 0.60 -0.9
1,202,840 + CSW01_05755 0.60 +0.8
1,202,840 + CSW01_05755 0.60 +0.6
1,202,840 + CSW01_05755 0.60 +0.4
1,202,840 + CSW01_05755 0.60 -0.1
1,202,848 - CSW01_05755 0.60 -1.1
1,202,848 - CSW01_05755 0.60 -0.9
1,202,848 - CSW01_05755 0.60 +0.5
1,202,862 + CSW01_05755 0.62 +0.6
1,202,870 - CSW01_05755 0.62 +0.3
1,202,870 - CSW01_05755 0.62 -0.8
1,202,893 - CSW01_05755 0.65 +0.5
1,202,898 - CSW01_05755 0.65 -0.5
1,202,972 - CSW01_05755 0.72 +1.6
1,202,980 - CSW01_05755 0.73 +0.1
1,202,996 + CSW01_05755 0.75 +2.3
1,203,017 - CSW01_05755 0.77 -0.4
1,203,055 + CSW01_05755 0.80 -0.1
1,203,121 + CSW01_05755 0.87 +0.2
1,203,129 - CSW01_05755 0.87 +0.5
1,203,131 + CSW01_05755 0.88 -0.3
1,203,131 + CSW01_05755 0.88 -0.0
1,203,131 + CSW01_05755 0.88 +0.3
1,203,131 + CSW01_05755 0.88 -0.1
1,203,131 + CSW01_05755 0.88 +0.2
1,203,131 + CSW01_05755 0.88 +0.3
1,203,131 + CSW01_05755 0.88 +0.1
1,203,131 + CSW01_05755 0.88 -0.0
1,203,131 + CSW01_05755 0.88 +0.4
1,203,131 + CSW01_05755 0.88 +1.4
1,203,131 + CSW01_05755 0.88 +0.4
1,203,131 + CSW01_05755 0.88 -1.9
1,203,131 + CSW01_05755 0.88 +0.3
1,203,131 + CSW01_05755 0.88 -1.7
1,203,131 + CSW01_05755 0.88 +0.1
1,203,131 + CSW01_05755 0.88 -1.0
1,203,131 + CSW01_05755 0.88 +0.3
1,203,131 + CSW01_05755 0.88 +0.9
1,203,131 + CSW01_05755 0.88 -0.3
1,203,131 + CSW01_05755 0.88 +0.2
1,203,131 + CSW01_05755 0.88 -0.2
1,203,131 + CSW01_05755 0.88 -0.5
1,203,131 + CSW01_05755 0.88 +0.2
1,203,131 + CSW01_05755 0.88 -0.1
1,203,131 + CSW01_05755 0.88 +1.1
1,203,131 + CSW01_05755 0.88 -1.1
1,203,139 - CSW01_05755 0.88 -0.0
1,203,139 - CSW01_05755 0.88 -0.6
1,203,139 - CSW01_05755 0.88 -0.6
1,203,139 - CSW01_05755 0.88 -0.3
1,203,139 - CSW01_05755 0.88 +0.1
1,203,139 - CSW01_05755 0.88 -0.0
1,203,139 - CSW01_05755 0.88 -0.0
1,203,139 - CSW01_05755 0.88 +0.0
1,203,139 - CSW01_05755 0.88 +0.3
1,203,139 - CSW01_05755 0.88 -1.8
1,203,139 - CSW01_05755 0.88 +0.7
1,203,139 - CSW01_05755 0.88 -0.4
1,203,139 - CSW01_05755 0.88 -0.6
1,203,139 - CSW01_05755 0.88 +0.3
1,203,139 - CSW01_05755 0.88 -0.1
1,203,139 - CSW01_05755 0.88 -0.4
1,203,139 - CSW01_05755 0.88 -0.1
1,203,139 - CSW01_05755 0.88 +0.1
1,203,139 - CSW01_05755 0.88 +1.5
1,203,139 - CSW01_05755 0.88 -0.0
1,203,139 - CSW01_05755 0.88 +0.1
1,203,150 - CSW01_05755 0.89 -0.4

Or see this region's nucleotide sequence