Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05535

Experiment: LB_Anaerobic_180MIN_ZN16A

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB_Anaerobic_180MIN_ZN16A
1,153,480	-		CSW01_05530	0.36	+0.4
1,153,481	-		CSW01_05530	0.36	-0.8
1,153,481	-		CSW01_05530	0.36	+0.1
1,153,521	-		CSW01_05530	0.39	+3.5
1,153,521	-		CSW01_05530	0.39	+0.2
1,153,532	+		CSW01_05530	0.40	+1.1
1,153,532	+		CSW01_05530	0.40	+0.9
1,153,540	-		CSW01_05530	0.41	-0.8
1,153,629	-		CSW01_05530	0.47	-0.0
1,153,646	-		CSW01_05530	0.49	-0.1
1,153,652	+		CSW01_05530	0.49	-0.5
1,153,660	-		CSW01_05530	0.50	-0.2
1,153,688	+		CSW01_05530	0.52	+0.4
1,153,688	+		CSW01_05530	0.52	-0.4
1,153,728	+		CSW01_05530	0.55	+0.4
1,153,791	+		CSW01_05530	0.59	+0.6
1,153,820	+		CSW01_05530	0.61	+1.2
1,153,853	+		CSW01_05530	0.64	-0.6
1,153,920	+		CSW01_05530	0.69	-0.8
1,153,936	-		CSW01_05530	0.70	+1.6
1,153,982	+		CSW01_05530	0.74	+0.0
1,154,054	-		CSW01_05530	0.79	-0.4
1,154,054	-		CSW01_05530	0.79	-0.8
1,154,054	-		CSW01_05530	0.79	-0.1
1,154,054	-		CSW01_05530	0.79	-1.1
1,154,086	+		CSW01_05530	0.81	+0.3
1,154,087	-		CSW01_05530	0.81	+0.0
1,154,154	+		CSW01_05530	0.86	+0.1
1,154,156	+		CSW01_05530	0.86	-2.4
1,154,156	+		CSW01_05530	0.86	+0.7
1,154,156	+		CSW01_05530	0.86	-0.2
1,154,156	+		CSW01_05530	0.86	+1.4
1,154,164	-		CSW01_05530	0.87	-0.1
1,154,164	-		CSW01_05530	0.87	-0.3
1,154,164	-		CSW01_05530	0.87	-0.4
1,154,164	-		CSW01_05530	0.87	+0.6
1,154,164	-		CSW01_05530	0.87	+0.2
1,154,164	-		CSW01_05530	0.87	-0.4
1,154,168	+		CSW01_05530	0.87	+1.7
1,154,176	-		CSW01_05530	0.88	+0.4
1,154,176	-		CSW01_05530	0.88	-0.5
1,154,176	-		CSW01_05530	0.88	-1.6
1,154,220	-				+0.3
1,154,242	-				-0.1
1,154,345	+				+0.6
1,154,345	+				-0.5
1,154,353	-				+0.1
1,154,427	+				+0.3
1,154,473	-				-0.8
1,154,504	-				+0.2
1,154,514	-				+0.2
1,154,514	-				-0.2
1,154,527	+		CSW01_05535	0.10	+0.5
1,154,535	-		CSW01_05535	0.11	+0.2
1,154,535	-		CSW01_05535	0.11	+0.4
1,154,602	-		CSW01_05535	0.15	+1.3
1,154,656	-		CSW01_05535	0.18	+0.1
1,154,734	+		CSW01_05535	0.23	+0.6
1,154,735	-		CSW01_05535	0.23	+0.5
1,154,769	-		CSW01_05535	0.25	+0.3
1,154,857	-		CSW01_05535	0.31	-0.5
1,154,881	+		CSW01_05535	0.32	-1.6
1,154,886	+		CSW01_05535	0.32	-0.5
1,154,886	+		CSW01_05535	0.32	+0.0
1,154,886	+		CSW01_05535	0.32	+1.0
1,154,886	+		CSW01_05535	0.32	-0.4
1,154,889	-		CSW01_05535	0.33	+0.2
1,154,894	-		CSW01_05535	0.33	+0.1
1,154,894	-		CSW01_05535	0.33	-0.3
1,154,894	-		CSW01_05535	0.33	+0.8
1,154,894	-		CSW01_05535	0.33	+0.3
1,154,894	-		CSW01_05535	0.33	+0.7
1,154,902	+		CSW01_05535	0.33	+0.6
1,154,902	+		CSW01_05535	0.33	+0.3
1,154,902	+		CSW01_05535	0.33	+0.8
1,155,000	+		CSW01_05535	0.40	+1.0
1,155,031	+		CSW01_05535	0.41	-0.5
1,155,075	+		CSW01_05535	0.44	+0.6
1,155,083	-		CSW01_05535	0.45	+0.2
1,155,083	-		CSW01_05535	0.45	-0.6
1,155,098	+		CSW01_05535	0.46	-0.1
1,155,149	-		CSW01_05535	0.49	-0.5
1,155,237	-		CSW01_05535	0.54	+0.4
1,155,295	+		CSW01_05535	0.58	-1.0
1,155,295	+		CSW01_05535	0.58	+0.0
1,155,295	+		CSW01_05535	0.58	+0.4
1,155,303	-		CSW01_05535	0.58	+0.7
1,155,425	-		CSW01_05535	0.66	-1.2
1,155,439	+		CSW01_05535	0.67	-2.0
1,155,440	+		CSW01_05535	0.67	+1.5
1,155,495	+		CSW01_05535	0.70	+0.0
1,155,543	+		CSW01_05535	0.73	-0.2
1,155,543	+		CSW01_05535	0.73	+1.5
1,155,553	+		CSW01_05535	0.74	+0.2
1,155,553	+		CSW01_05535	0.74	+0.5
1,155,561	-		CSW01_05535	0.74	+0.4
1,155,561	-		CSW01_05535	0.74	+1.0
1,155,575	+		CSW01_05535	0.75	-0.0
1,155,581	-		CSW01_05535	0.76	+0.0
1,155,593	-		CSW01_05535	0.76	+1.0
1,155,596	-		CSW01_05535	0.77	+0.4
1,155,695	+		CSW01_05535	0.83	-0.2
1,155,695	+		CSW01_05535	0.83	-0.1
1,155,695	+		CSW01_05535	0.83	-0.7
1,155,782	+		CSW01_05535	0.88	+1.5
1,155,785	-		CSW01_05535	0.88	-1.0
1,155,799	+		CSW01_05535	0.89	+0.2
1,155,829	+				+0.0
1,155,885	-				+1.7
1,155,890	-				-1.0
1,155,890	-				+0.0
1,155,894	-				+0.0
1,155,929	+				-1.2
1,155,951	+				-0.3
1,155,961	-				-1.2
1,156,037	+				-0.2
1,156,100	-		CSW01_05540	0.15	+1.2
1,156,102	+		CSW01_05540	0.16	-0.7
1,156,102	+		CSW01_05540	0.16	-0.4
1,156,102	+		CSW01_05540	0.16	+0.7
1,156,110	-		CSW01_05540	0.17	-2.6
1,156,110	-		CSW01_05540	0.17	+0.1
1,156,110	-		CSW01_05540	0.17	-0.3
1,156,110	-		CSW01_05540	0.17	+2.4
1,156,110	-		CSW01_05540	0.17	-0.4
1,156,110	-		CSW01_05540	0.17	+2.0
1,156,110	-		CSW01_05540	0.17	-0.6
1,156,110	-		CSW01_05540	0.17	-0.5
1,156,115	-		CSW01_05540	0.17	+0.2
1,156,136	+		CSW01_05540	0.20	+0.4
1,156,136	+		CSW01_05540	0.20	-0.7
1,156,144	-		CSW01_05540	0.21	+0.7
1,156,180	+		CSW01_05540	0.25	-1.5
1,156,180	+		CSW01_05540	0.25	+0.7
1,156,188	-		CSW01_05540	0.26	-0.3
1,156,188	-		CSW01_05540	0.26	+0.1
1,156,188	-		CSW01_05540	0.26	+0.0
1,156,190	-		CSW01_05540	0.27	+0.4
1,156,200	-		CSW01_05540	0.28	+0.4
1,156,206	+		CSW01_05540	0.29	+0.7
1,156,206	+		CSW01_05540	0.29	-0.2
1,156,206	+		CSW01_05540	0.29	-0.0
1,156,214	-		CSW01_05540	0.30	+0.5
1,156,214	-		CSW01_05540	0.30	+0.6
1,156,221	+		CSW01_05540	0.30	-0.8
1,156,408	-		CSW01_05540	0.53	-0.4
1,156,459	-		CSW01_05540	0.60	-0.1
1,156,465	+		CSW01_05540	0.60	-1.6
1,156,494	+		CSW01_05540	0.64	+0.6
1,156,512	-		CSW01_05540	0.66	-0.7
1,156,556	-		CSW01_05540	0.72	-1.9
1,156,556	-		CSW01_05540	0.72	-0.7
1,156,561	-		CSW01_05540	0.72	-0.2
1,156,563	+		CSW01_05540	0.72	+0.4
1,156,617	+		CSW01_05540	0.79	+1.2
1,156,617	+		CSW01_05540	0.79	-1.5
1,156,625	-		CSW01_05540	0.80	+0.0
1,156,702	+		CSW01_05540	0.90	-2.0
1,156,932	-				+2.5