Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04520

Experiment: LB_Anaerobic_180MIN_ZN16A

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_04505 and CSW01_04510 are separated by 134 nucleotidesCSW01_04510 and CSW01_04515 overlap by 4 nucleotidesCSW01_04515 and CSW01_04520 are separated by 200 nucleotidesCSW01_04520 and CSW01_04525 are separated by 65 nucleotidesCSW01_04525 and CSW01_04530 overlap by 4 nucleotides CSW01_04505: CSW01_04505 - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 938,534 to 939,229 _04505 CSW01_04510: CSW01_04510 - 50S ribosomal protein L31 type B, at 939,364 to 939,621 _04510 CSW01_04515: CSW01_04515 - 50S ribosomal protein L36, at 939,618 to 939,743 _04515 CSW01_04520: CSW01_04520 - aminobenzoyl-glutamate transporter, at 939,944 to 941,530 _04520 CSW01_04525: CSW01_04525 - DUF188 domain-containing protein, at 941,596 to 942,045 _04525 CSW01_04530: CSW01_04530 - hypothetical protein, at 942,042 to 942,341 _04530 Position (kb) 939 940 941 942Strain fitness (log2 ratio) -2 -1 0 1 2at 939.037 kb on + strand, within CSW01_04505at 939.045 kb on - strand, within CSW01_04505at 939.077 kb on - strand, within CSW01_04505at 939.105 kb on + strand, within CSW01_04505at 939.115 kb on - strand, within CSW01_04505at 939.115 kb on - strand, within CSW01_04505at 939.440 kb on + strand, within CSW01_04510at 939.440 kb on + strand, within CSW01_04510at 939.466 kb on + strand, within CSW01_04510at 939.474 kb on - strand, within CSW01_04510at 939.526 kb on - strand, within CSW01_04510at 939.526 kb on - strand, within CSW01_04510at 939.536 kb on - strand, within CSW01_04510at 939.634 kb on - strand, within CSW01_04515at 939.730 kb on - strand, within CSW01_04515at 939.730 kb on - strand, within CSW01_04515at 939.730 kb on - strand, within CSW01_04515at 939.730 kb on - strand, within CSW01_04515at 939.920 kb on + strandat 939.938 kb on + strandat 939.946 kb on - strandat 939.946 kb on - strandat 940.039 kb on - strandat 940.039 kb on - strandat 940.104 kb on + strand, within CSW01_04520at 940.118 kb on + strand, within CSW01_04520at 940.194 kb on - strand, within CSW01_04520at 940.200 kb on + strand, within CSW01_04520at 940.200 kb on + strand, within CSW01_04520at 940.208 kb on - strand, within CSW01_04520at 940.208 kb on - strand, within CSW01_04520at 940.208 kb on - strand, within CSW01_04520at 940.234 kb on - strand, within CSW01_04520at 940.250 kb on + strand, within CSW01_04520at 940.250 kb on + strand, within CSW01_04520at 940.258 kb on - strand, within CSW01_04520at 940.258 kb on - strand, within CSW01_04520at 940.258 kb on - strand, within CSW01_04520at 940.304 kb on + strand, within CSW01_04520at 940.312 kb on - strand, within CSW01_04520at 940.312 kb on - strand, within CSW01_04520at 940.341 kb on - strand, within CSW01_04520at 940.352 kb on - strand, within CSW01_04520at 940.414 kb on - strand, within CSW01_04520at 940.445 kb on - strand, within CSW01_04520at 940.469 kb on - strand, within CSW01_04520at 940.469 kb on - strand, within CSW01_04520at 940.531 kb on + strand, within CSW01_04520at 940.608 kb on + strand, within CSW01_04520at 940.645 kb on - strand, within CSW01_04520at 940.692 kb on + strand, within CSW01_04520at 940.725 kb on - strand, within CSW01_04520at 940.739 kb on + strand, within CSW01_04520at 940.739 kb on + strand, within CSW01_04520at 940.739 kb on + strand, within CSW01_04520at 940.781 kb on + strand, within CSW01_04520at 940.786 kb on + strand, within CSW01_04520at 940.794 kb on - strand, within CSW01_04520at 940.869 kb on - strand, within CSW01_04520at 940.870 kb on + strand, within CSW01_04520at 940.922 kb on - strand, within CSW01_04520at 940.944 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.949 kb on + strand, within CSW01_04520at 940.957 kb on - strand, within CSW01_04520at 940.957 kb on - strand, within CSW01_04520at 940.957 kb on - strand, within CSW01_04520at 940.957 kb on - strand, within CSW01_04520at 941.031 kb on + strand, within CSW01_04520at 941.035 kb on - strand, within CSW01_04520at 941.151 kb on - strand, within CSW01_04520at 941.151 kb on - strand, within CSW01_04520at 941.151 kb on - strand, within CSW01_04520at 941.153 kb on + strand, within CSW01_04520at 941.274 kb on + strand, within CSW01_04520at 941.274 kb on + strand, within CSW01_04520at 941.329 kb on - strand, within CSW01_04520at 941.354 kb on - strand, within CSW01_04520at 941.354 kb on - strand, within CSW01_04520at 941.354 kb on - strand, within CSW01_04520at 941.368 kb on + strand, within CSW01_04520at 941.447 kb on + strandat 941.469 kb on - strandat 941.601 kb on - strandat 941.748 kb on + strand, within CSW01_04525at 941.753 kb on + strand, within CSW01_04525at 941.836 kb on - strand, within CSW01_04525at 941.896 kb on + strand, within CSW01_04525at 941.896 kb on + strand, within CSW01_04525at 941.896 kb on + strand, within CSW01_04525at 941.969 kb on + strand, within CSW01_04525at 941.970 kb on - strand, within CSW01_04525at 942.032 kb on + strandat 942.032 kb on + strandat 942.063 kb on - strandat 942.088 kb on + strand, within CSW01_04530at 942.131 kb on + strand, within CSW01_04530at 942.131 kb on + strand, within CSW01_04530at 942.131 kb on + strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.139 kb on - strand, within CSW01_04530at 942.180 kb on + strand, within CSW01_04530at 942.225 kb on + strand, within CSW01_04530at 942.225 kb on + strand, within CSW01_04530at 942.250 kb on + strand, within CSW01_04530at 942.250 kb on + strand, within CSW01_04530at 942.328 kb on + strandat 942.336 kb on - strandat 942.371 kb on - strandat 942.407 kb on + strandat 942.428 kb on - strandat 942.525 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
remove
939,037 + CSW01_04505 0.72 +0.2
939,045 - CSW01_04505 0.73 -0.8
939,077 - CSW01_04505 0.78 -1.5
939,105 + CSW01_04505 0.82 -0.0
939,115 - CSW01_04505 0.83 -1.7
939,115 - CSW01_04505 0.83 -0.2
939,440 + CSW01_04510 0.29 +0.2
939,440 + CSW01_04510 0.29 +0.2
939,466 + CSW01_04510 0.40 +0.2
939,474 - CSW01_04510 0.43 -0.4
939,526 - CSW01_04510 0.63 -1.2
939,526 - CSW01_04510 0.63 +0.8
939,536 - CSW01_04510 0.67 +0.1
939,634 - CSW01_04515 0.13 -0.6
939,730 - CSW01_04515 0.89 +0.2
939,730 - CSW01_04515 0.89 -0.0
939,730 - CSW01_04515 0.89 +0.1
939,730 - CSW01_04515 0.89 -0.1
939,920 + -0.0
939,938 + -0.6
939,946 - -0.4
939,946 - -0.2
940,039 - -0.2
940,039 - +0.4
940,104 + CSW01_04520 0.10 +0.1
940,118 + CSW01_04520 0.11 +0.3
940,194 - CSW01_04520 0.16 +0.6
940,200 + CSW01_04520 0.16 +0.2
940,200 + CSW01_04520 0.16 -0.1
940,208 - CSW01_04520 0.17 -0.2
940,208 - CSW01_04520 0.17 +0.7
940,208 - CSW01_04520 0.17 +0.3
940,234 - CSW01_04520 0.18 -2.1
940,250 + CSW01_04520 0.19 +1.4
940,250 + CSW01_04520 0.19 -0.2
940,258 - CSW01_04520 0.20 +0.0
940,258 - CSW01_04520 0.20 +0.1
940,258 - CSW01_04520 0.20 -0.4
940,304 + CSW01_04520 0.23 +0.3
940,312 - CSW01_04520 0.23 +0.2
940,312 - CSW01_04520 0.23 +1.8
940,341 - CSW01_04520 0.25 +0.3
940,352 - CSW01_04520 0.26 -0.4
940,414 - CSW01_04520 0.30 +0.1
940,445 - CSW01_04520 0.32 -0.2
940,469 - CSW01_04520 0.33 +0.5
940,469 - CSW01_04520 0.33 +0.6
940,531 + CSW01_04520 0.37 -0.5
940,608 + CSW01_04520 0.42 -0.2
940,645 - CSW01_04520 0.44 -0.0
940,692 + CSW01_04520 0.47 +0.2
940,725 - CSW01_04520 0.49 -0.0
940,739 + CSW01_04520 0.50 +0.1
940,739 + CSW01_04520 0.50 -1.1
940,739 + CSW01_04520 0.50 +0.6
940,781 + CSW01_04520 0.53 -0.2
940,786 + CSW01_04520 0.53 +0.5
940,794 - CSW01_04520 0.54 -1.4
940,869 - CSW01_04520 0.58 +1.1
940,870 + CSW01_04520 0.58 +1.3
940,922 - CSW01_04520 0.62 +0.1
940,944 + CSW01_04520 0.63 -0.8
940,949 + CSW01_04520 0.63 +0.6
940,949 + CSW01_04520 0.63 +0.2
940,949 + CSW01_04520 0.63 +1.2
940,949 + CSW01_04520 0.63 -0.7
940,949 + CSW01_04520 0.63 +1.3
940,949 + CSW01_04520 0.63 -0.2
940,949 + CSW01_04520 0.63 -0.3
940,949 + CSW01_04520 0.63 +1.4
940,957 - CSW01_04520 0.64 +0.5
940,957 - CSW01_04520 0.64 -0.1
940,957 - CSW01_04520 0.64 -0.7
940,957 - CSW01_04520 0.64 +0.0
941,031 + CSW01_04520 0.68 +0.1
941,035 - CSW01_04520 0.69 +0.8
941,151 - CSW01_04520 0.76 +0.5
941,151 - CSW01_04520 0.76 +1.0
941,151 - CSW01_04520 0.76 -0.1
941,153 + CSW01_04520 0.76 +0.1
941,274 + CSW01_04520 0.84 -0.8
941,274 + CSW01_04520 0.84 +0.6
941,329 - CSW01_04520 0.87 -0.1
941,354 - CSW01_04520 0.89 -0.5
941,354 - CSW01_04520 0.89 -0.5
941,354 - CSW01_04520 0.89 +0.1
941,368 + CSW01_04520 0.90 -0.2
941,447 + +0.0
941,469 - +0.6
941,601 - -1.1
941,748 + CSW01_04525 0.34 +0.1
941,753 + CSW01_04525 0.35 -0.0
941,836 - CSW01_04525 0.53 +0.1
941,896 + CSW01_04525 0.67 -1.3
941,896 + CSW01_04525 0.67 +0.3
941,896 + CSW01_04525 0.67 +0.6
941,969 + CSW01_04525 0.83 -0.7
941,970 - CSW01_04525 0.83 +0.3
942,032 + +0.0
942,032 + -0.0
942,063 - +0.2
942,088 + CSW01_04530 0.15 +0.5
942,131 + CSW01_04530 0.30 +0.2
942,131 + CSW01_04530 0.30 +0.1
942,131 + CSW01_04530 0.30 +0.0
942,139 - CSW01_04530 0.32 -0.0
942,139 - CSW01_04530 0.32 -0.6
942,139 - CSW01_04530 0.32 -0.3
942,139 - CSW01_04530 0.32 +1.4
942,139 - CSW01_04530 0.32 +1.3
942,139 - CSW01_04530 0.32 +0.1
942,139 - CSW01_04530 0.32 +0.0
942,139 - CSW01_04530 0.32 +1.3
942,139 - CSW01_04530 0.32 -0.2
942,180 + CSW01_04530 0.46 -0.7
942,225 + CSW01_04530 0.61 +0.6
942,225 + CSW01_04530 0.61 -0.6
942,250 + CSW01_04530 0.69 -0.3
942,250 + CSW01_04530 0.69 -0.1
942,328 + +0.4
942,336 - -1.1
942,371 - -1.2
942,407 + -0.0
942,428 - +0.6
942,525 + -1.5

Or see this region's nucleotide sequence