Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03985

Experiment: LB_Anaerobic_180MIN_ZN16A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03980 and CSW01_03985 are separated by 106 nucleotidesCSW01_03985 and CSW01_03990 are separated by 235 nucleotides CSW01_03980: CSW01_03980 - IMP dehydrogenase, at 818,765 to 820,228 _03980 CSW01_03985: CSW01_03985 - GMP synthase (glutamine-hydrolyzing), at 820,335 to 821,888 _03985 CSW01_03990: CSW01_03990 - chitinase, at 822,124 to 823,848 _03990 Position (kb) 820 821 822Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 819.354 kb on - strand, within CSW01_03980at 819.392 kb on - strand, within CSW01_03980at 819.392 kb on - strand, within CSW01_03980at 819.392 kb on - strand, within CSW01_03980at 819.412 kb on - strand, within CSW01_03980at 819.443 kb on + strand, within CSW01_03980at 819.451 kb on - strand, within CSW01_03980at 819.451 kb on - strand, within CSW01_03980at 819.483 kb on - strand, within CSW01_03980at 819.494 kb on - strand, within CSW01_03980at 819.512 kb on + strand, within CSW01_03980at 819.531 kb on + strand, within CSW01_03980at 819.574 kb on - strand, within CSW01_03980at 819.589 kb on + strand, within CSW01_03980at 819.596 kb on - strand, within CSW01_03980at 819.635 kb on + strand, within CSW01_03980at 819.668 kb on + strand, within CSW01_03980at 819.678 kb on + strand, within CSW01_03980at 819.698 kb on + strand, within CSW01_03980at 819.706 kb on - strand, within CSW01_03980at 819.706 kb on - strand, within CSW01_03980at 819.872 kb on + strand, within CSW01_03980at 819.946 kb on + strand, within CSW01_03980at 819.946 kb on + strand, within CSW01_03980at 819.954 kb on + strand, within CSW01_03980at 820.019 kb on - strand, within CSW01_03980at 820.083 kb on + strandat 820.091 kb on - strandat 820.096 kb on + strandat 820.099 kb on - strandat 820.099 kb on - strandat 820.099 kb on - strandat 820.099 kb on - strandat 820.118 kb on - strandat 820.258 kb on + strandat 820.394 kb on - strandat 820.405 kb on + strandat 820.432 kb on + strandat 820.604 kb on + strand, within CSW01_03985at 820.604 kb on + strand, within CSW01_03985at 820.604 kb on + strand, within CSW01_03985at 820.612 kb on - strand, within CSW01_03985at 820.612 kb on - strand, within CSW01_03985at 820.612 kb on - strand, within CSW01_03985at 820.612 kb on - strand, within CSW01_03985at 820.612 kb on - strand, within CSW01_03985at 820.612 kb on - strand, within CSW01_03985at 820.647 kb on - strand, within CSW01_03985at 820.749 kb on - strand, within CSW01_03985at 820.842 kb on + strand, within CSW01_03985at 820.847 kb on + strand, within CSW01_03985at 820.850 kb on - strand, within CSW01_03985at 820.949 kb on - strand, within CSW01_03985at 821.002 kb on + strand, within CSW01_03985at 821.020 kb on + strand, within CSW01_03985at 821.037 kb on - strand, within CSW01_03985at 821.323 kb on + strand, within CSW01_03985at 821.323 kb on + strand, within CSW01_03985at 821.331 kb on - strand, within CSW01_03985at 821.426 kb on + strand, within CSW01_03985at 821.447 kb on + strand, within CSW01_03985at 821.473 kb on + strand, within CSW01_03985at 821.618 kb on - strand, within CSW01_03985at 821.660 kb on + strand, within CSW01_03985at 821.660 kb on + strand, within CSW01_03985at 821.660 kb on + strand, within CSW01_03985at 821.718 kb on + strand, within CSW01_03985at 821.733 kb on + strandat 821.741 kb on - strandat 821.841 kb on + strandat 821.841 kb on + strandat 821.841 kb on + strandat 821.841 kb on + strandat 821.841 kb on + strandat 821.841 kb on + strandat 821.841 kb on + strandat 821.849 kb on - strandat 821.849 kb on - strandat 821.849 kb on - strandat 821.849 kb on - strandat 821.849 kb on - strandat 821.849 kb on - strandat 821.946 kb on - strandat 822.178 kb on + strandat 822.186 kb on - strandat 822.275 kb on + strandat 822.293 kb on - strandat 822.460 kb on + strand, within CSW01_03990at 822.467 kb on + strand, within CSW01_03990at 822.531 kb on + strand, within CSW01_03990at 822.539 kb on - strand, within CSW01_03990at 822.675 kb on - strand, within CSW01_03990at 822.689 kb on + strand, within CSW01_03990at 822.689 kb on + strand, within CSW01_03990at 822.697 kb on - strand, within CSW01_03990at 822.697 kb on - strand, within CSW01_03990at 822.697 kb on - strand, within CSW01_03990at 822.712 kb on + strand, within CSW01_03990at 822.758 kb on + strand, within CSW01_03990at 822.771 kb on + strand, within CSW01_03990at 822.774 kb on - strand, within CSW01_03990at 822.796 kb on - strand, within CSW01_03990at 822.809 kb on + strand, within CSW01_03990at 822.835 kb on + strand, within CSW01_03990at 822.846 kb on - strand, within CSW01_03990at 822.854 kb on + strand, within CSW01_03990

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
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819,354 - CSW01_03980 0.40 +0.5
819,392 - CSW01_03980 0.43 +0.7
819,392 - CSW01_03980 0.43 -0.7
819,392 - CSW01_03980 0.43 -0.5
819,412 - CSW01_03980 0.44 -0.5
819,443 + CSW01_03980 0.46 +0.5
819,451 - CSW01_03980 0.47 -0.5
819,451 - CSW01_03980 0.47 -0.2
819,483 - CSW01_03980 0.49 -1.6
819,494 - CSW01_03980 0.50 +0.8
819,512 + CSW01_03980 0.51 -1.6
819,531 + CSW01_03980 0.52 -2.1
819,574 - CSW01_03980 0.55 -1.2
819,589 + CSW01_03980 0.56 +0.5
819,596 - CSW01_03980 0.57 -0.8
819,635 + CSW01_03980 0.59 -2.0
819,668 + CSW01_03980 0.62 +1.5
819,678 + CSW01_03980 0.62 -1.1
819,698 + CSW01_03980 0.64 +0.2
819,706 - CSW01_03980 0.64 -1.8
819,706 - CSW01_03980 0.64 -1.6
819,872 + CSW01_03980 0.76 +0.5
819,946 + CSW01_03980 0.81 -1.5
819,946 + CSW01_03980 0.81 -0.8
819,954 + CSW01_03980 0.81 -0.3
820,019 - CSW01_03980 0.86 -0.2
820,083 + -1.0
820,091 - -0.8
820,096 + -0.9
820,099 - -0.4
820,099 - +0.1
820,099 - -1.9
820,099 - -0.7
820,118 - +0.2
820,258 + -0.2
820,394 - +1.5
820,405 + +0.5
820,432 + +1.5
820,604 + CSW01_03985 0.17 -0.5
820,604 + CSW01_03985 0.17 +0.5
820,604 + CSW01_03985 0.17 +1.5
820,612 - CSW01_03985 0.18 +1.5
820,612 - CSW01_03985 0.18 +0.0
820,612 - CSW01_03985 0.18 +0.5
820,612 - CSW01_03985 0.18 +0.5
820,612 - CSW01_03985 0.18 -0.5
820,612 - CSW01_03985 0.18 -0.9
820,647 - CSW01_03985 0.20 +2.1
820,749 - CSW01_03985 0.27 -2.8
820,842 + CSW01_03985 0.33 -1.1
820,847 + CSW01_03985 0.33 +0.5
820,850 - CSW01_03985 0.33 +0.8
820,949 - CSW01_03985 0.40 +0.2
821,002 + CSW01_03985 0.43 -0.5
821,020 + CSW01_03985 0.44 -1.5
821,037 - CSW01_03985 0.45 -2.7
821,323 + CSW01_03985 0.64 +0.5
821,323 + CSW01_03985 0.64 -1.5
821,331 - CSW01_03985 0.64 +0.5
821,426 + CSW01_03985 0.70 -0.5
821,447 + CSW01_03985 0.72 -0.5
821,473 + CSW01_03985 0.73 -2.3
821,618 - CSW01_03985 0.83 +0.5
821,660 + CSW01_03985 0.85 -1.8
821,660 + CSW01_03985 0.85 -0.2
821,660 + CSW01_03985 0.85 +1.5
821,718 + CSW01_03985 0.89 -1.5
821,733 + -1.1
821,741 - -2.8
821,841 + -0.5
821,841 + +0.9
821,841 + -0.3
821,841 + -2.1
821,841 + -1.5
821,841 + -0.5
821,841 + -2.1
821,849 - +1.5
821,849 - -2.1
821,849 - +0.5
821,849 - +0.5
821,849 - +0.5
821,849 - +0.5
821,946 - -0.3
822,178 + -0.4
822,186 - +0.2
822,275 + -0.3
822,293 - +0.2
822,460 + CSW01_03990 0.19 +0.2
822,467 + CSW01_03990 0.20 -0.2
822,531 + CSW01_03990 0.24 -0.8
822,539 - CSW01_03990 0.24 +1.2
822,675 - CSW01_03990 0.32 -0.8
822,689 + CSW01_03990 0.33 -0.1
822,689 + CSW01_03990 0.33 -0.4
822,697 - CSW01_03990 0.33 -0.1
822,697 - CSW01_03990 0.33 -0.4
822,697 - CSW01_03990 0.33 +0.1
822,712 + CSW01_03990 0.34 -0.1
822,758 + CSW01_03990 0.37 -0.6
822,771 + CSW01_03990 0.38 +0.1
822,774 - CSW01_03990 0.38 +0.1
822,796 - CSW01_03990 0.39 -0.9
822,809 + CSW01_03990 0.40 +0.1
822,835 + CSW01_03990 0.41 -0.2
822,846 - CSW01_03990 0.42 +0.5
822,854 + CSW01_03990 0.42 -0.5

Or see this region's nucleotide sequence