Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02665

Experiment: LB_Anaerobic_180MIN_ZN16A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02655 and CSW01_02660 are separated by 273 nucleotidesCSW01_02660 and CSW01_02665 are separated by 176 nucleotidesCSW01_02665 and CSW01_02670 are separated by 177 nucleotidesCSW01_02670 and CSW01_02675 are separated by 47 nucleotidesCSW01_02675 and CSW01_02680 are separated by 30 nucleotides CSW01_02655: CSW01_02655 - type II secretion system protein, at 532,938 to 533,462 _02655 CSW01_02660: CSW01_02660 - high-affinity zinc uptake system protein ZnuA precursor, at 533,736 to 533,981 _02660 CSW01_02665: CSW01_02665 - peptidase M23, at 534,158 to 535,438 _02665 CSW01_02670: CSW01_02670 - hypothetical protein, at 535,616 to 535,843 _02670 CSW01_02675: CSW01_02675 - hypothetical protein, at 535,891 to 536,259 _02675 CSW01_02680: CSW01_02680 - WYL domain-containing protein, at 536,290 to 537,024 _02680 Position (kb) 534 535 536Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 533.162 kb on - strand, within CSW01_02655at 533.163 kb on - strand, within CSW01_02655at 533.163 kb on - strand, within CSW01_02655at 533.248 kb on + strand, within CSW01_02655at 533.255 kb on - strand, within CSW01_02655at 533.256 kb on - strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.329 kb on + strand, within CSW01_02655at 533.329 kb on + strand, within CSW01_02655at 533.337 kb on - strand, within CSW01_02655at 533.341 kb on + strand, within CSW01_02655at 533.350 kb on + strand, within CSW01_02655at 533.389 kb on - strand, within CSW01_02655at 533.415 kb on - strandat 533.430 kb on - strandat 533.446 kb on - strandat 533.507 kb on + strandat 533.515 kb on - strandat 533.538 kb on - strandat 533.654 kb on - strandat 533.679 kb on + strandat 533.689 kb on + strandat 533.697 kb on - strandat 533.697 kb on - strandat 533.723 kb on - strandat 533.750 kb on - strandat 533.891 kb on + strand, within CSW01_02660at 533.896 kb on + strand, within CSW01_02660at 533.896 kb on + strand, within CSW01_02660at 533.904 kb on - strand, within CSW01_02660at 533.904 kb on - strand, within CSW01_02660at 533.904 kb on - strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.945 kb on + strand, within CSW01_02660at 533.989 kb on + strandat 534.006 kb on - strandat 534.028 kb on - strandat 534.055 kb on - strandat 534.062 kb on + strandat 534.062 kb on + strandat 534.089 kb on - strandat 534.268 kb on - strandat 534.268 kb on - strandat 534.300 kb on + strand, within CSW01_02665at 534.349 kb on - strand, within CSW01_02665at 534.417 kb on - strand, within CSW01_02665at 534.418 kb on - strand, within CSW01_02665at 534.468 kb on - strand, within CSW01_02665at 534.526 kb on - strand, within CSW01_02665at 534.549 kb on + strand, within CSW01_02665at 534.556 kb on + strand, within CSW01_02665at 534.571 kb on - strand, within CSW01_02665at 534.583 kb on - strand, within CSW01_02665at 534.664 kb on + strand, within CSW01_02665at 534.671 kb on + strand, within CSW01_02665at 534.799 kb on + strand, within CSW01_02665at 534.817 kb on - strand, within CSW01_02665at 534.840 kb on - strand, within CSW01_02665at 534.898 kb on + strand, within CSW01_02665at 534.919 kb on - strand, within CSW01_02665at 534.921 kb on + strand, within CSW01_02665at 534.929 kb on - strand, within CSW01_02665at 534.942 kb on - strand, within CSW01_02665at 534.947 kb on + strand, within CSW01_02665at 534.948 kb on - strand, within CSW01_02665at 534.952 kb on + strand, within CSW01_02665at 534.955 kb on - strand, within CSW01_02665at 534.982 kb on + strand, within CSW01_02665at 534.983 kb on - strand, within CSW01_02665at 535.066 kb on + strand, within CSW01_02665at 535.119 kb on - strand, within CSW01_02665at 535.147 kb on - strand, within CSW01_02665at 535.149 kb on - strand, within CSW01_02665at 535.186 kb on - strand, within CSW01_02665at 535.273 kb on - strand, within CSW01_02665at 535.291 kb on + strand, within CSW01_02665at 535.319 kb on + strandat 535.359 kb on - strandat 535.503 kb on + strandat 535.535 kb on + strandat 535.535 kb on + strandat 535.640 kb on + strand, within CSW01_02670at 535.648 kb on - strand, within CSW01_02670at 535.648 kb on - strand, within CSW01_02670at 535.652 kb on - strand, within CSW01_02670at 535.675 kb on - strand, within CSW01_02670at 535.734 kb on - strand, within CSW01_02670at 535.898 kb on - strandat 535.898 kb on - strandat 535.902 kb on + strandat 535.946 kb on - strand, within CSW01_02675at 535.948 kb on + strand, within CSW01_02675at 535.948 kb on + strand, within CSW01_02675at 535.948 kb on + strand, within CSW01_02675at 535.955 kb on + strand, within CSW01_02675at 535.956 kb on - strand, within CSW01_02675at 535.956 kb on - strand, within CSW01_02675at 535.956 kb on - strand, within CSW01_02675at 535.989 kb on - strand, within CSW01_02675at 536.016 kb on + strand, within CSW01_02675at 536.016 kb on + strand, within CSW01_02675at 536.016 kb on + strand, within CSW01_02675at 536.017 kb on + strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.024 kb on - strand, within CSW01_02675at 536.081 kb on - strand, within CSW01_02675at 536.091 kb on - strand, within CSW01_02675at 536.148 kb on + strand, within CSW01_02675at 536.189 kb on + strand, within CSW01_02675at 536.226 kb on - strandat 536.238 kb on + strandat 536.239 kb on - strandat 536.243 kb on + strandat 536.243 kb on + strandat 536.243 kb on + strandat 536.243 kb on - strandat 536.264 kb on + strandat 536.264 kb on + strandat 536.271 kb on + strandat 536.271 kb on + strandat 536.279 kb on - strandat 536.326 kb on - strandat 536.326 kb on - strandat 536.326 kb on - strandat 536.365 kb on + strand, within CSW01_02680at 536.385 kb on - strand, within CSW01_02680at 536.404 kb on + strand, within CSW01_02680at 536.412 kb on - strand, within CSW01_02680at 536.419 kb on - strand, within CSW01_02680

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
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533,162 - CSW01_02655 0.43 -0.1
533,163 - CSW01_02655 0.43 +0.3
533,163 - CSW01_02655 0.43 +1.0
533,248 + CSW01_02655 0.59 -1.2
533,255 - CSW01_02655 0.60 -0.5
533,256 - CSW01_02655 0.61 -0.3
533,292 + CSW01_02655 0.67 +0.3
533,292 + CSW01_02655 0.67 +0.7
533,292 + CSW01_02655 0.67 -0.0
533,292 + CSW01_02655 0.67 +0.1
533,292 + CSW01_02655 0.67 -0.1
533,300 - CSW01_02655 0.69 -0.5
533,300 - CSW01_02655 0.69 +0.1
533,300 - CSW01_02655 0.69 -0.4
533,300 - CSW01_02655 0.69 -0.4
533,300 - CSW01_02655 0.69 -1.2
533,300 - CSW01_02655 0.69 +0.2
533,300 - CSW01_02655 0.69 -0.0
533,300 - CSW01_02655 0.69 -0.3
533,300 - CSW01_02655 0.69 -0.2
533,329 + CSW01_02655 0.74 -0.0
533,329 + CSW01_02655 0.74 -0.2
533,337 - CSW01_02655 0.76 -0.2
533,341 + CSW01_02655 0.77 +0.2
533,350 + CSW01_02655 0.78 +0.1
533,389 - CSW01_02655 0.86 -3.6
533,415 - -0.3
533,430 - +0.1
533,446 - +0.1
533,507 + -0.5
533,515 - +0.0
533,538 - -1.2
533,654 - -0.1
533,679 + +0.3
533,689 + -0.6
533,697 - -0.1
533,697 - +0.3
533,723 - -0.1
533,750 - +0.2
533,891 + CSW01_02660 0.63 -0.3
533,896 + CSW01_02660 0.65 +0.1
533,896 + CSW01_02660 0.65 -1.5
533,904 - CSW01_02660 0.68 -0.0
533,904 - CSW01_02660 0.68 +0.8
533,904 - CSW01_02660 0.68 -0.3
533,911 + CSW01_02660 0.71 -0.2
533,911 + CSW01_02660 0.71 +0.8
533,911 + CSW01_02660 0.71 -0.4
533,911 + CSW01_02660 0.71 +0.4
533,911 + CSW01_02660 0.71 -0.5
533,911 + CSW01_02660 0.71 +0.2
533,919 - CSW01_02660 0.74 +0.1
533,919 - CSW01_02660 0.74 +0.1
533,919 - CSW01_02660 0.74 +0.4
533,919 - CSW01_02660 0.74 -0.1
533,919 - CSW01_02660 0.74 -0.1
533,919 - CSW01_02660 0.74 -1.0
533,919 - CSW01_02660 0.74 +0.1
533,919 - CSW01_02660 0.74 -0.1
533,945 + CSW01_02660 0.85 -0.1
533,989 + +0.0
534,006 - -0.3
534,028 - +0.3
534,055 - +0.4
534,062 + -0.4
534,062 + +1.0
534,089 - -0.8
534,268 - -0.2
534,268 - -0.3
534,300 + CSW01_02665 0.11 +0.7
534,349 - CSW01_02665 0.15 +0.7
534,417 - CSW01_02665 0.20 -1.4
534,418 - CSW01_02665 0.20 -0.1
534,468 - CSW01_02665 0.24 +0.4
534,526 - CSW01_02665 0.29 +0.5
534,549 + CSW01_02665 0.31 -0.3
534,556 + CSW01_02665 0.31 +0.2
534,571 - CSW01_02665 0.32 +0.2
534,583 - CSW01_02665 0.33 -0.1
534,664 + CSW01_02665 0.40 +0.8
534,671 + CSW01_02665 0.40 +1.1
534,799 + CSW01_02665 0.50 +0.0
534,817 - CSW01_02665 0.51 +0.0
534,840 - CSW01_02665 0.53 -0.3
534,898 + CSW01_02665 0.58 -0.1
534,919 - CSW01_02665 0.59 +0.2
534,921 + CSW01_02665 0.60 +2.6
534,929 - CSW01_02665 0.60 +0.2
534,942 - CSW01_02665 0.61 +0.6
534,947 + CSW01_02665 0.62 -0.4
534,948 - CSW01_02665 0.62 +0.7
534,952 + CSW01_02665 0.62 +0.1
534,955 - CSW01_02665 0.62 -0.2
534,982 + CSW01_02665 0.64 -0.3
534,983 - CSW01_02665 0.64 +1.8
535,066 + CSW01_02665 0.71 +0.2
535,119 - CSW01_02665 0.75 +0.7
535,147 - CSW01_02665 0.77 +0.1
535,149 - CSW01_02665 0.77 +0.2
535,186 - CSW01_02665 0.80 -0.2
535,273 - CSW01_02665 0.87 -0.1
535,291 + CSW01_02665 0.88 +0.2
535,319 + -0.3
535,359 - +0.2
535,503 + -0.0
535,535 + -0.2
535,535 + +0.3
535,640 + CSW01_02670 0.11 -0.5
535,648 - CSW01_02670 0.14 +0.9
535,648 - CSW01_02670 0.14 -0.3
535,652 - CSW01_02670 0.16 -0.5
535,675 - CSW01_02670 0.26 -0.2
535,734 - CSW01_02670 0.52 -0.8
535,898 - -0.3
535,898 - -0.3
535,902 + +0.4
535,946 - CSW01_02675 0.15 -0.9
535,948 + CSW01_02675 0.15 +0.3
535,948 + CSW01_02675 0.15 +0.2
535,948 + CSW01_02675 0.15 +0.2
535,955 + CSW01_02675 0.17 +0.2
535,956 - CSW01_02675 0.18 +0.3
535,956 - CSW01_02675 0.18 -1.8
535,956 - CSW01_02675 0.18 -0.6
535,989 - CSW01_02675 0.27 +1.3
536,016 + CSW01_02675 0.34 -0.7
536,016 + CSW01_02675 0.34 -0.3
536,016 + CSW01_02675 0.34 -0.6
536,017 + CSW01_02675 0.34 -1.3
536,024 - CSW01_02675 0.36 +0.1
536,024 - CSW01_02675 0.36 +0.5
536,024 - CSW01_02675 0.36 -0.0
536,024 - CSW01_02675 0.36 +0.4
536,024 - CSW01_02675 0.36 +1.5
536,081 - CSW01_02675 0.51 -0.3
536,091 - CSW01_02675 0.54 -1.2
536,148 + CSW01_02675 0.70 -0.8
536,189 + CSW01_02675 0.81 +0.4
536,226 - -0.6
536,238 + -0.3
536,239 - -0.4
536,243 + -0.8
536,243 + -0.4
536,243 + -0.3
536,243 - +0.4
536,264 + +0.3
536,264 + +0.5
536,271 + +0.2
536,271 + +0.6
536,279 - +0.7
536,326 - -0.1
536,326 - +0.5
536,326 - +0.4
536,365 + CSW01_02680 0.10 +0.6
536,385 - CSW01_02680 0.13 -0.2
536,404 + CSW01_02680 0.16 -0.4
536,412 - CSW01_02680 0.17 +0.1
536,419 - CSW01_02680 0.18 -0.3

Or see this region's nucleotide sequence