Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02375

Experiment: LB_Anaerobic_180MIN_ZN16A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02350 and CSW01_02355 are separated by 14 nucleotidesCSW01_02355 and CSW01_02360 are separated by 28 nucleotidesCSW01_02360 and CSW01_02365 are separated by 15 nucleotidesCSW01_02365 and CSW01_02370 are separated by 41 nucleotidesCSW01_02370 and CSW01_02375 are separated by 414 nucleotidesCSW01_02375 and CSW01_02380 are separated by 255 nucleotidesCSW01_02380 and CSW01_02385 are separated by 37 nucleotidesCSW01_02385 and CSW01_02390 are separated by 10 nucleotidesCSW01_02390 and CSW01_02395 are separated by 48 nucleotidesCSW01_02395 and CSW01_02400 are separated by 109 nucleotides CSW01_02350: CSW01_02350 - tRNA-Asn, at 477,142 to 477,217 _02350 CSW01_02355: CSW01_02355 - tRNA-Thr, at 477,232 to 477,307 _02355 CSW01_02360: CSW01_02360 - tRNA-Asn, at 477,336 to 477,411 _02360 CSW01_02365: CSW01_02365 - tRNA-Thr, at 477,427 to 477,502 _02365 CSW01_02370: CSW01_02370 - tRNA-Phe, at 477,544 to 477,619 _02370 CSW01_02375: CSW01_02375 - methyl-accepting chemotaxis protein, at 478,034 to 479,659 _02375 CSW01_02380: CSW01_02380 - tRNA-Asn, at 479,915 to 479,990 _02380 CSW01_02385: CSW01_02385 - tRNA-Phe, at 480,028 to 480,103 _02385 CSW01_02390: CSW01_02390 - tRNA-Thr, at 480,114 to 480,189 _02390 CSW01_02395: CSW01_02395 - tRNA-Phe, at 480,238 to 480,313 _02395 CSW01_02400: CSW01_02400 - lytic murein transglycosylase, at 480,423 to 481,550 _02400 Position (kb) 478 479 480Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 477.751 kb on + strandat 477.779 kb on - strandat 477.885 kb on + strandat 477.909 kb on - strandat 477.945 kb on - strandat 478.005 kb on + strandat 478.005 kb on + strandat 478.059 kb on + strandat 478.066 kb on + strandat 478.066 kb on + strandat 478.066 kb on + strandat 478.066 kb on + strandat 478.074 kb on - strandat 478.074 kb on - strandat 478.074 kb on - strandat 478.074 kb on - strandat 478.074 kb on - strandat 478.074 kb on - strandat 478.104 kb on + strandat 478.112 kb on - strandat 478.123 kb on - strandat 478.130 kb on + strandat 478.135 kb on + strandat 478.135 kb on + strandat 478.138 kb on - strandat 478.138 kb on - strandat 478.249 kb on - strand, within CSW01_02375at 478.312 kb on - strand, within CSW01_02375at 478.312 kb on - strand, within CSW01_02375at 478.333 kb on - strand, within CSW01_02375at 478.395 kb on + strand, within CSW01_02375at 478.398 kb on - strand, within CSW01_02375at 478.403 kb on - strand, within CSW01_02375at 478.451 kb on + strand, within CSW01_02375at 478.619 kb on + strand, within CSW01_02375at 478.619 kb on + strand, within CSW01_02375at 478.619 kb on + strand, within CSW01_02375at 478.627 kb on - strand, within CSW01_02375at 478.627 kb on - strand, within CSW01_02375at 478.645 kb on + strand, within CSW01_02375at 478.666 kb on + strand, within CSW01_02375at 478.832 kb on + strand, within CSW01_02375at 478.832 kb on + strand, within CSW01_02375at 478.840 kb on - strand, within CSW01_02375at 478.840 kb on - strand, within CSW01_02375at 478.844 kb on + strand, within CSW01_02375at 478.872 kb on - strand, within CSW01_02375at 478.872 kb on - strand, within CSW01_02375at 478.877 kb on - strand, within CSW01_02375at 478.877 kb on - strand, within CSW01_02375at 478.904 kb on + strand, within CSW01_02375at 478.909 kb on + strand, within CSW01_02375at 478.979 kb on + strand, within CSW01_02375at 478.979 kb on + strand, within CSW01_02375at 478.979 kb on + strand, within CSW01_02375at 478.980 kb on - strand, within CSW01_02375at 478.984 kb on + strand, within CSW01_02375at 478.987 kb on - strand, within CSW01_02375at 478.987 kb on - strand, within CSW01_02375at 478.992 kb on - strand, within CSW01_02375at 479.093 kb on - strand, within CSW01_02375at 479.104 kb on + strand, within CSW01_02375at 479.149 kb on - strand, within CSW01_02375at 479.190 kb on + strand, within CSW01_02375at 479.198 kb on - strand, within CSW01_02375at 479.298 kb on + strand, within CSW01_02375at 479.339 kb on + strand, within CSW01_02375at 479.339 kb on + strand, within CSW01_02375at 479.344 kb on + strand, within CSW01_02375at 479.344 kb on + strand, within CSW01_02375at 479.344 kb on + strand, within CSW01_02375at 479.344 kb on + strand, within CSW01_02375at 479.349 kb on + strand, within CSW01_02375at 479.352 kb on - strand, within CSW01_02375at 479.352 kb on - strand, within CSW01_02375at 479.429 kb on + strand, within CSW01_02375at 479.460 kb on + strand, within CSW01_02375at 479.502 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.520 kb on + strandat 479.528 kb on - strandat 479.528 kb on - strandat 479.528 kb on - strandat 479.541 kb on - strandat 479.620 kb on - strandat 479.680 kb on + strandat 479.680 kb on + strandat 479.680 kb on + strandat 479.680 kb on + strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.688 kb on - strandat 479.735 kb on - strandat 479.735 kb on - strandat 479.835 kb on + strandat 479.939 kb on - strand, within CSW01_02380at 479.966 kb on + strand, within CSW01_02380at 480.158 kb on - strand, within CSW01_02390at 480.191 kb on + strandat 480.191 kb on + strandat 480.199 kb on - strandat 480.543 kb on - strand, within CSW01_02400at 480.543 kb on - strand, within CSW01_02400at 480.568 kb on + strand, within CSW01_02400at 480.577 kb on + strand, within CSW01_02400at 480.577 kb on + strand, within CSW01_02400at 480.577 kb on - strand, within CSW01_02400at 480.587 kb on - strand, within CSW01_02400at 480.632 kb on - strand, within CSW01_02400at 480.632 kb on - strand, within CSW01_02400at 480.634 kb on + strand, within CSW01_02400at 480.642 kb on - strand, within CSW01_02400

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
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477,751 + +0.2
477,779 - +0.4
477,885 + -0.4
477,909 - +0.1
477,945 - +0.5
478,005 + +0.4
478,005 + -1.2
478,059 + +0.0
478,066 + +0.2
478,066 + +1.2
478,066 + +0.9
478,066 + +0.4
478,074 - -0.4
478,074 - +0.2
478,074 - +0.1
478,074 - -0.6
478,074 - +0.6
478,074 - +0.5
478,104 + -1.0
478,112 - +0.4
478,123 - -0.2
478,130 + +0.5
478,135 + +0.4
478,135 + +1.3
478,138 - -0.6
478,138 - -0.1
478,249 - CSW01_02375 0.13 -0.2
478,312 - CSW01_02375 0.17 -1.0
478,312 - CSW01_02375 0.17 -3.0
478,333 - CSW01_02375 0.18 +0.6
478,395 + CSW01_02375 0.22 +1.3
478,398 - CSW01_02375 0.22 +0.9
478,403 - CSW01_02375 0.23 +0.1
478,451 + CSW01_02375 0.26 -0.6
478,619 + CSW01_02375 0.36 +0.7
478,619 + CSW01_02375 0.36 -0.4
478,619 + CSW01_02375 0.36 -0.0
478,627 - CSW01_02375 0.36 +0.7
478,627 - CSW01_02375 0.36 +0.3
478,645 + CSW01_02375 0.38 -0.6
478,666 + CSW01_02375 0.39 +0.4
478,832 + CSW01_02375 0.49 +0.5
478,832 + CSW01_02375 0.49 +0.2
478,840 - CSW01_02375 0.50 +0.2
478,840 - CSW01_02375 0.50 +0.1
478,844 + CSW01_02375 0.50 +0.1
478,872 - CSW01_02375 0.52 +0.2
478,872 - CSW01_02375 0.52 -0.1
478,877 - CSW01_02375 0.52 -0.3
478,877 - CSW01_02375 0.52 +0.5
478,904 + CSW01_02375 0.54 +0.3
478,909 + CSW01_02375 0.54 +0.2
478,979 + CSW01_02375 0.58 +0.8
478,979 + CSW01_02375 0.58 +1.1
478,979 + CSW01_02375 0.58 -0.2
478,980 - CSW01_02375 0.58 +0.2
478,984 + CSW01_02375 0.58 +1.2
478,987 - CSW01_02375 0.59 +0.3
478,987 - CSW01_02375 0.59 -0.3
478,992 - CSW01_02375 0.59 +0.8
479,093 - CSW01_02375 0.65 -0.6
479,104 + CSW01_02375 0.66 +0.0
479,149 - CSW01_02375 0.69 +0.4
479,190 + CSW01_02375 0.71 +0.3
479,198 - CSW01_02375 0.72 +0.3
479,298 + CSW01_02375 0.78 -1.0
479,339 + CSW01_02375 0.80 -0.7
479,339 + CSW01_02375 0.80 -0.5
479,344 + CSW01_02375 0.81 -0.7
479,344 + CSW01_02375 0.81 +0.2
479,344 + CSW01_02375 0.81 -0.1
479,344 + CSW01_02375 0.81 +0.2
479,349 + CSW01_02375 0.81 -0.2
479,352 - CSW01_02375 0.81 -0.1
479,352 - CSW01_02375 0.81 -0.4
479,429 + CSW01_02375 0.86 +0.5
479,460 + CSW01_02375 0.88 +2.2
479,502 + +0.8
479,520 + +0.2
479,520 + +0.3
479,520 + +0.9
479,520 + +0.4
479,520 + +0.5
479,520 + -0.2
479,520 + -0.3
479,520 + +0.5
479,520 + +0.8
479,520 + +0.5
479,520 + -0.6
479,520 + -0.1
479,520 + +1.5
479,528 - -0.1
479,528 - +0.9
479,528 - +0.3
479,541 - +0.5
479,620 - -0.9
479,680 + +0.6
479,680 + -0.1
479,680 + +1.0
479,680 + +0.7
479,688 - +0.0
479,688 - -0.3
479,688 - +0.1
479,688 - -0.3
479,688 - -0.7
479,688 - -0.6
479,688 - +0.2
479,735 - +1.2
479,735 - -1.0
479,835 + +0.1
479,939 - CSW01_02380 0.32 -0.3
479,966 + CSW01_02380 0.67 -0.8
480,158 - CSW01_02390 0.58 +0.1
480,191 + -2.0
480,191 + +0.2
480,199 - -0.1
480,543 - CSW01_02400 0.11 -0.6
480,543 - CSW01_02400 0.11 +0.5
480,568 + CSW01_02400 0.13 +0.1
480,577 + CSW01_02400 0.14 -1.0
480,577 + CSW01_02400 0.14 +0.8
480,577 - CSW01_02400 0.14 -0.9
480,587 - CSW01_02400 0.15 +0.5
480,632 - CSW01_02400 0.19 +3.0
480,632 - CSW01_02400 0.19 +0.4
480,634 + CSW01_02400 0.19 +0.9
480,642 - CSW01_02400 0.19 -0.6

Or see this region's nucleotide sequence