Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01395

Experiment: LB_Anaerobic_180MIN_ZN16A

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01390 and CSW01_01395 overlap by 35 nucleotidesCSW01_01395 and CSW01_01400 are separated by 347 nucleotides CSW01_01390: CSW01_01390 - mannose-6-phosphate isomerase, class I, at 273,249 to 274,448 _01390 CSW01_01395: CSW01_01395 - transcriptional regulator, at 274,414 to 275,394 _01395 CSW01_01400: CSW01_01400 - HlyC/CorC family transporter, at 275,742 to 276,800 _01400 Position (kb) 274 275 276Strain fitness (log2 ratio) -2 -1 0 1 2 3at 273.490 kb on + strand, within CSW01_01390at 273.490 kb on + strand, within CSW01_01390at 273.500 kb on - strand, within CSW01_01390at 273.507 kb on - strand, within CSW01_01390at 273.659 kb on + strand, within CSW01_01390at 273.659 kb on + strand, within CSW01_01390at 273.664 kb on + strand, within CSW01_01390at 273.667 kb on - strand, within CSW01_01390at 273.667 kb on - strand, within CSW01_01390at 273.667 kb on - strand, within CSW01_01390at 273.674 kb on + strand, within CSW01_01390at 273.674 kb on + strand, within CSW01_01390at 273.681 kb on - strand, within CSW01_01390at 273.709 kb on + strand, within CSW01_01390at 273.748 kb on - strand, within CSW01_01390at 273.782 kb on - strand, within CSW01_01390at 273.784 kb on + strand, within CSW01_01390at 273.785 kb on + strand, within CSW01_01390at 273.792 kb on - strand, within CSW01_01390at 273.793 kb on - strand, within CSW01_01390at 273.793 kb on - strand, within CSW01_01390at 273.886 kb on + strand, within CSW01_01390at 273.938 kb on + strand, within CSW01_01390at 273.958 kb on + strand, within CSW01_01390at 273.997 kb on - strand, within CSW01_01390at 273.997 kb on - strand, within CSW01_01390at 274.019 kb on + strand, within CSW01_01390at 274.021 kb on + strand, within CSW01_01390at 274.038 kb on + strand, within CSW01_01390at 274.038 kb on + strand, within CSW01_01390at 274.038 kb on + strand, within CSW01_01390at 274.038 kb on + strand, within CSW01_01390at 274.046 kb on - strand, within CSW01_01390at 274.046 kb on - strand, within CSW01_01390at 274.046 kb on - strand, within CSW01_01390at 274.046 kb on - strand, within CSW01_01390at 274.046 kb on - strand, within CSW01_01390at 274.046 kb on - strand, within CSW01_01390at 274.056 kb on + strand, within CSW01_01390at 274.057 kb on + strand, within CSW01_01390at 274.089 kb on + strand, within CSW01_01390at 274.099 kb on + strand, within CSW01_01390at 274.099 kb on + strand, within CSW01_01390at 274.100 kb on - strand, within CSW01_01390at 274.100 kb on - strand, within CSW01_01390at 274.102 kb on - strand, within CSW01_01390at 274.107 kb on - strand, within CSW01_01390at 274.111 kb on + strand, within CSW01_01390at 274.111 kb on + strand, within CSW01_01390at 274.119 kb on - strand, within CSW01_01390at 274.119 kb on - strand, within CSW01_01390at 274.129 kb on + strand, within CSW01_01390at 274.129 kb on + strand, within CSW01_01390at 274.130 kb on + strand, within CSW01_01390at 274.184 kb on - strand, within CSW01_01390at 274.189 kb on + strand, within CSW01_01390at 274.214 kb on + strand, within CSW01_01390at 274.216 kb on + strand, within CSW01_01390at 274.224 kb on - strand, within CSW01_01390at 274.224 kb on - strand, within CSW01_01390at 274.224 kb on - strand, within CSW01_01390at 274.273 kb on + strand, within CSW01_01390at 274.289 kb on - strand, within CSW01_01390at 274.334 kb on - strandat 274.334 kb on - strandat 274.334 kb on - strandat 274.408 kb on + strandat 274.461 kb on - strandat 274.463 kb on + strandat 274.471 kb on - strandat 274.498 kb on + strandat 274.568 kb on + strand, within CSW01_01395at 274.629 kb on + strand, within CSW01_01395at 274.689 kb on + strand, within CSW01_01395at 274.690 kb on + strand, within CSW01_01395at 274.703 kb on - strand, within CSW01_01395at 274.746 kb on - strand, within CSW01_01395at 274.756 kb on + strand, within CSW01_01395at 274.764 kb on - strand, within CSW01_01395at 274.794 kb on - strand, within CSW01_01395at 274.895 kb on + strand, within CSW01_01395at 274.900 kb on + strand, within CSW01_01395at 274.913 kb on + strand, within CSW01_01395at 274.932 kb on + strand, within CSW01_01395at 274.937 kb on + strand, within CSW01_01395at 274.940 kb on - strand, within CSW01_01395at 274.991 kb on - strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.004 kb on + strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.012 kb on - strand, within CSW01_01395at 275.014 kb on + strand, within CSW01_01395at 275.014 kb on + strand, within CSW01_01395at 275.022 kb on - strand, within CSW01_01395at 275.043 kb on - strand, within CSW01_01395at 275.045 kb on - strand, within CSW01_01395at 275.085 kb on + strand, within CSW01_01395at 275.109 kb on - strand, within CSW01_01395at 275.114 kb on - strand, within CSW01_01395at 275.209 kb on + strand, within CSW01_01395at 275.233 kb on + strand, within CSW01_01395at 275.265 kb on - strand, within CSW01_01395at 275.294 kb on + strand, within CSW01_01395at 275.299 kb on + strandat 275.439 kb on - strandat 275.479 kb on + strandat 275.544 kb on + strandat 275.544 kb on + strandat 275.568 kb on + strandat 275.576 kb on - strandat 275.576 kb on - strandat 275.577 kb on - strandat 275.583 kb on + strandat 275.583 kb on + strandat 275.583 kb on + strandat 275.586 kb on - strandat 275.591 kb on - strandat 275.591 kb on - strandat 275.598 kb on - strandat 275.598 kb on - strandat 275.604 kb on - strandat 275.614 kb on - strandat 275.668 kb on - strandat 275.717 kb on + strandat 275.760 kb on + strandat 275.862 kb on + strand, within CSW01_01400at 275.868 kb on - strand, within CSW01_01400at 275.882 kb on + strand, within CSW01_01400at 275.890 kb on - strand, within CSW01_01400at 275.890 kb on - strand, within CSW01_01400at 275.898 kb on + strand, within CSW01_01400at 275.898 kb on + strand, within CSW01_01400at 275.898 kb on + strand, within CSW01_01400at 275.898 kb on + strand, within CSW01_01400at 275.903 kb on + strand, within CSW01_01400at 275.906 kb on - strand, within CSW01_01400at 275.906 kb on - strand, within CSW01_01400at 275.906 kb on - strand, within CSW01_01400at 275.906 kb on - strand, within CSW01_01400at 275.911 kb on - strand, within CSW01_01400at 275.911 kb on - strand, within CSW01_01400at 275.911 kb on - strand, within CSW01_01400at 275.961 kb on + strand, within CSW01_01400at 275.968 kb on - strand, within CSW01_01400at 275.979 kb on + strand, within CSW01_01400at 275.979 kb on + strand, within CSW01_01400at 275.979 kb on + strand, within CSW01_01400at 275.979 kb on + strand, within CSW01_01400at 275.979 kb on + strand, within CSW01_01400at 275.986 kb on + strand, within CSW01_01400at 275.994 kb on - strand, within CSW01_01400at 276.065 kb on + strand, within CSW01_01400at 276.065 kb on + strand, within CSW01_01400at 276.065 kb on + strand, within CSW01_01400at 276.073 kb on - strand, within CSW01_01400at 276.073 kb on - strand, within CSW01_01400at 276.073 kb on - strand, within CSW01_01400at 276.073 kb on - strand, within CSW01_01400at 276.085 kb on - strand, within CSW01_01400at 276.109 kb on + strand, within CSW01_01400at 276.134 kb on + strand, within CSW01_01400at 276.349 kb on - strand, within CSW01_01400at 276.368 kb on - strand, within CSW01_01400

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_Anaerobic_180MIN_ZN16A
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273,490 + CSW01_01390 0.20 -1.2
273,490 + CSW01_01390 0.20 -0.2
273,500 - CSW01_01390 0.21 -0.2
273,507 - CSW01_01390 0.21 +0.3
273,659 + CSW01_01390 0.34 -0.1
273,659 + CSW01_01390 0.34 +0.4
273,664 + CSW01_01390 0.35 -0.3
273,667 - CSW01_01390 0.35 +0.1
273,667 - CSW01_01390 0.35 +1.0
273,667 - CSW01_01390 0.35 -0.1
273,674 + CSW01_01390 0.35 -0.2
273,674 + CSW01_01390 0.35 -0.5
273,681 - CSW01_01390 0.36 -0.2
273,709 + CSW01_01390 0.38 +0.4
273,748 - CSW01_01390 0.42 +0.1
273,782 - CSW01_01390 0.44 +0.5
273,784 + CSW01_01390 0.45 -0.3
273,785 + CSW01_01390 0.45 -0.2
273,792 - CSW01_01390 0.45 -1.8
273,793 - CSW01_01390 0.45 -0.0
273,793 - CSW01_01390 0.45 -0.9
273,886 + CSW01_01390 0.53 +0.4
273,938 + CSW01_01390 0.57 -0.4
273,958 + CSW01_01390 0.59 +0.8
273,997 - CSW01_01390 0.62 -0.1
273,997 - CSW01_01390 0.62 -0.5
274,019 + CSW01_01390 0.64 -0.2
274,021 + CSW01_01390 0.64 +0.5
274,038 + CSW01_01390 0.66 +0.3
274,038 + CSW01_01390 0.66 +0.0
274,038 + CSW01_01390 0.66 -0.3
274,038 + CSW01_01390 0.66 -0.3
274,046 - CSW01_01390 0.66 -0.8
274,046 - CSW01_01390 0.66 +0.4
274,046 - CSW01_01390 0.66 -0.1
274,046 - CSW01_01390 0.66 +0.1
274,046 - CSW01_01390 0.66 +0.1
274,046 - CSW01_01390 0.66 -0.6
274,056 + CSW01_01390 0.67 +0.9
274,057 + CSW01_01390 0.67 -0.5
274,089 + CSW01_01390 0.70 +0.3
274,099 + CSW01_01390 0.71 +0.1
274,099 + CSW01_01390 0.71 -0.1
274,100 - CSW01_01390 0.71 +0.2
274,100 - CSW01_01390 0.71 +0.1
274,102 - CSW01_01390 0.71 +0.2
274,107 - CSW01_01390 0.71 -0.3
274,111 + CSW01_01390 0.72 -0.6
274,111 + CSW01_01390 0.72 +0.1
274,119 - CSW01_01390 0.72 -0.0
274,119 - CSW01_01390 0.72 +0.2
274,129 + CSW01_01390 0.73 -0.5
274,129 + CSW01_01390 0.73 -0.6
274,130 + CSW01_01390 0.73 -0.9
274,184 - CSW01_01390 0.78 +0.1
274,189 + CSW01_01390 0.78 -0.0
274,214 + CSW01_01390 0.80 -0.2
274,216 + CSW01_01390 0.81 -0.4
274,224 - CSW01_01390 0.81 -0.7
274,224 - CSW01_01390 0.81 -0.6
274,224 - CSW01_01390 0.81 +1.0
274,273 + CSW01_01390 0.85 +0.1
274,289 - CSW01_01390 0.87 -0.2
274,334 - -0.4
274,334 - -0.1
274,334 - +0.2
274,408 + +0.1
274,461 - +0.3
274,463 + +0.3
274,471 - -0.1
274,498 + -0.9
274,568 + CSW01_01395 0.16 -0.1
274,629 + CSW01_01395 0.22 +1.0
274,689 + CSW01_01395 0.28 -0.2
274,690 + CSW01_01395 0.28 -1.0
274,703 - CSW01_01395 0.29 -0.5
274,746 - CSW01_01395 0.34 +0.2
274,756 + CSW01_01395 0.35 +0.5
274,764 - CSW01_01395 0.36 +0.5
274,794 - CSW01_01395 0.39 +0.2
274,895 + CSW01_01395 0.49 -0.3
274,900 + CSW01_01395 0.50 -0.1
274,913 + CSW01_01395 0.51 +0.1
274,932 + CSW01_01395 0.53 -0.6
274,937 + CSW01_01395 0.53 +0.2
274,940 - CSW01_01395 0.54 -0.6
274,991 - CSW01_01395 0.59 -0.8
275,004 + CSW01_01395 0.60 +1.0
275,004 + CSW01_01395 0.60 -0.5
275,004 + CSW01_01395 0.60 +0.6
275,004 + CSW01_01395 0.60 -0.2
275,004 + CSW01_01395 0.60 -1.0
275,004 + CSW01_01395 0.60 -0.1
275,004 + CSW01_01395 0.60 -0.1
275,004 + CSW01_01395 0.60 +0.1
275,004 + CSW01_01395 0.60 -0.3
275,012 - CSW01_01395 0.61 +0.4
275,012 - CSW01_01395 0.61 +0.1
275,012 - CSW01_01395 0.61 -0.0
275,012 - CSW01_01395 0.61 -0.3
275,012 - CSW01_01395 0.61 -0.6
275,012 - CSW01_01395 0.61 +0.3
275,012 - CSW01_01395 0.61 -0.6
275,012 - CSW01_01395 0.61 +1.5
275,012 - CSW01_01395 0.61 -0.3
275,012 - CSW01_01395 0.61 -0.4
275,012 - CSW01_01395 0.61 -1.3
275,012 - CSW01_01395 0.61 -0.1
275,012 - CSW01_01395 0.61 -1.7
275,014 + CSW01_01395 0.61 +0.1
275,014 + CSW01_01395 0.61 -0.2
275,022 - CSW01_01395 0.62 -1.2
275,043 - CSW01_01395 0.64 -0.2
275,045 - CSW01_01395 0.64 +0.5
275,085 + CSW01_01395 0.68 -0.1
275,109 - CSW01_01395 0.71 +0.7
275,114 - CSW01_01395 0.71 +0.5
275,209 + CSW01_01395 0.81 +0.0
275,233 + CSW01_01395 0.83 -0.1
275,265 - CSW01_01395 0.87 +0.2
275,294 + CSW01_01395 0.90 -0.8
275,299 + -0.5
275,439 - +0.1
275,479 + -0.1
275,544 + +0.0
275,544 + -0.2
275,568 + -0.1
275,576 - -0.1
275,576 - -2.6
275,577 - -0.4
275,583 + -0.5
275,583 + +0.7
275,583 + +0.0
275,586 - +1.0
275,591 - +0.1
275,591 - +0.5
275,598 - -0.2
275,598 - -0.5
275,604 - -0.3
275,614 - -1.2
275,668 - +0.3
275,717 + +0.3
275,760 + +0.3
275,862 + CSW01_01400 0.11 +0.1
275,868 - CSW01_01400 0.12 -0.1
275,882 + CSW01_01400 0.13 -0.6
275,890 - CSW01_01400 0.14 -0.4
275,890 - CSW01_01400 0.14 +0.7
275,898 + CSW01_01400 0.15 -1.0
275,898 + CSW01_01400 0.15 -0.8
275,898 + CSW01_01400 0.15 +0.6
275,898 + CSW01_01400 0.15 +0.0
275,903 + CSW01_01400 0.15 -0.1
275,906 - CSW01_01400 0.15 -0.2
275,906 - CSW01_01400 0.15 +0.5
275,906 - CSW01_01400 0.15 +0.5
275,906 - CSW01_01400 0.15 -0.2
275,911 - CSW01_01400 0.16 +0.1
275,911 - CSW01_01400 0.16 +0.3
275,911 - CSW01_01400 0.16 -0.7
275,961 + CSW01_01400 0.21 -0.7
275,968 - CSW01_01400 0.21 -1.5
275,979 + CSW01_01400 0.22 +0.1
275,979 + CSW01_01400 0.22 +3.1
275,979 + CSW01_01400 0.22 -0.5
275,979 + CSW01_01400 0.22 -2.0
275,979 + CSW01_01400 0.22 +0.1
275,986 + CSW01_01400 0.23 -0.4
275,994 - CSW01_01400 0.24 -0.1
276,065 + CSW01_01400 0.31 +0.5
276,065 + CSW01_01400 0.31 +0.3
276,065 + CSW01_01400 0.31 +0.5
276,073 - CSW01_01400 0.31 -0.4
276,073 - CSW01_01400 0.31 -1.8
276,073 - CSW01_01400 0.31 -0.3
276,073 - CSW01_01400 0.31 +0.2
276,085 - CSW01_01400 0.32 -0.2
276,109 + CSW01_01400 0.35 -0.5
276,134 + CSW01_01400 0.37 -0.1
276,349 - CSW01_01400 0.57 -0.0
276,368 - CSW01_01400 0.59 +0.2

Or see this region's nucleotide sequence