Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29895

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29890 and AO356_29895 are separated by 407 nucleotidesAO356_29895 and AO356_29900 are separated by 188 nucleotides AO356_29890: AO356_29890 - phosphodiesterase, at 6,950,868 to 6,952,121 _29890 AO356_29895: AO356_29895 - AraC family transcriptional regulator, at 6,952,529 to 6,953,494 _29895 AO356_29900: AO356_29900 - L-fucose dehydrogenase, at 6,953,683 to 6,954,867 _29900 Position (kb) 6952 6953 6954Strain fitness (log2 ratio) -1 0 1at 6951.558 kb on + strand, within AO356_29890at 6951.559 kb on - strand, within AO356_29890at 6951.616 kb on + strand, within AO356_29890at 6951.616 kb on + strand, within AO356_29890at 6951.616 kb on + strand, within AO356_29890at 6951.616 kb on + strand, within AO356_29890at 6951.617 kb on - strand, within AO356_29890at 6951.617 kb on - strand, within AO356_29890at 6951.620 kb on + strand, within AO356_29890at 6951.620 kb on + strand, within AO356_29890at 6951.621 kb on - strand, within AO356_29890at 6951.621 kb on - strand, within AO356_29890at 6951.621 kb on - strand, within AO356_29890at 6951.623 kb on - strand, within AO356_29890at 6951.675 kb on + strand, within AO356_29890at 6951.676 kb on - strand, within AO356_29890at 6951.725 kb on + strand, within AO356_29890at 6952.065 kb on + strandat 6952.078 kb on + strandat 6952.078 kb on + strandat 6952.079 kb on - strandat 6952.079 kb on - strandat 6952.079 kb on - strandat 6952.079 kb on - strandat 6952.139 kb on + strandat 6952.231 kb on + strandat 6952.272 kb on - strandat 6952.275 kb on + strandat 6952.275 kb on + strandat 6952.276 kb on - strandat 6952.280 kb on + strandat 6952.423 kb on + strandat 6952.424 kb on - strandat 6952.489 kb on - strandat 6952.666 kb on + strand, within AO356_29895at 6952.666 kb on + strand, within AO356_29895at 6952.704 kb on + strand, within AO356_29895at 6952.804 kb on + strand, within AO356_29895at 6952.815 kb on + strand, within AO356_29895at 6952.816 kb on - strand, within AO356_29895at 6952.816 kb on - strand, within AO356_29895at 6952.917 kb on + strand, within AO356_29895at 6952.917 kb on + strand, within AO356_29895at 6952.917 kb on + strand, within AO356_29895at 6952.917 kb on + strand, within AO356_29895at 6952.917 kb on + strand, within AO356_29895at 6952.917 kb on + strand, within AO356_29895at 6952.918 kb on - strand, within AO356_29895at 6952.918 kb on - strand, within AO356_29895at 6952.919 kb on + strand, within AO356_29895at 6952.919 kb on + strand, within AO356_29895at 6953.127 kb on - strand, within AO356_29895at 6953.130 kb on + strand, within AO356_29895at 6953.131 kb on - strandat 6953.281 kb on - strand, within AO356_29895at 6953.290 kb on - strand, within AO356_29895at 6953.299 kb on + strand, within AO356_29895at 6953.300 kb on - strand, within AO356_29895at 6953.300 kb on - strand, within AO356_29895at 6953.303 kb on + strand, within AO356_29895at 6953.304 kb on - strand, within AO356_29895at 6953.304 kb on - strand, within AO356_29895at 6953.304 kb on - strand, within AO356_29895at 6953.511 kb on + strandat 6953.618 kb on + strandat 6953.618 kb on + strandat 6953.619 kb on - strandat 6953.619 kb on - strandat 6953.625 kb on + strandat 6953.625 kb on + strandat 6953.707 kb on + strandat 6953.862 kb on - strand, within AO356_29900at 6953.881 kb on + strand, within AO356_29900at 6953.881 kb on + strand, within AO356_29900at 6953.882 kb on - strand, within AO356_29900at 6953.882 kb on - strand, within AO356_29900at 6953.882 kb on - strand, within AO356_29900at 6953.882 kb on - strand, within AO356_29900at 6953.882 kb on - strand, within AO356_29900at 6953.928 kb on + strand, within AO356_29900at 6953.929 kb on - strand, within AO356_29900at 6954.047 kb on + strand, within AO356_29900at 6954.047 kb on + strand, within AO356_29900at 6954.082 kb on + strand, within AO356_29900at 6954.082 kb on + strand, within AO356_29900at 6954.083 kb on - strand, within AO356_29900at 6954.148 kb on - strand, within AO356_29900at 6954.148 kb on - strand, within AO356_29900at 6954.175 kb on + strand, within AO356_29900at 6954.176 kb on - strand, within AO356_29900at 6954.187 kb on + strand, within AO356_29900at 6954.187 kb on + strand, within AO356_29900at 6954.188 kb on - strand, within AO356_29900at 6954.286 kb on - strand, within AO356_29900at 6954.478 kb on + strand, within AO356_29900

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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6,951,558 + AO356_29890 0.55 -0.0
6,951,559 - AO356_29890 0.55 +1.7
6,951,616 + AO356_29890 0.60 -0.2
6,951,616 + AO356_29890 0.60 -1.0
6,951,616 + AO356_29890 0.60 +0.4
6,951,616 + AO356_29890 0.60 +0.5
6,951,617 - AO356_29890 0.60 +0.2
6,951,617 - AO356_29890 0.60 +0.9
6,951,620 + AO356_29890 0.60 +0.0
6,951,620 + AO356_29890 0.60 +0.2
6,951,621 - AO356_29890 0.60 +0.3
6,951,621 - AO356_29890 0.60 -0.5
6,951,621 - AO356_29890 0.60 +1.2
6,951,623 - AO356_29890 0.60 -0.1
6,951,675 + AO356_29890 0.64 +0.9
6,951,676 - AO356_29890 0.64 -0.2
6,951,725 + AO356_29890 0.68 +0.7
6,952,065 + +0.9
6,952,078 + -0.6
6,952,078 + +1.2
6,952,079 - +0.3
6,952,079 - -0.7
6,952,079 - +0.0
6,952,079 - +0.3
6,952,139 + -0.9
6,952,231 + +0.1
6,952,272 - -0.4
6,952,275 + -0.5
6,952,275 + -1.0
6,952,276 - +1.1
6,952,280 + +0.3
6,952,423 + +0.1
6,952,424 - +0.5
6,952,489 - -0.9
6,952,666 + AO356_29895 0.14 +0.1
6,952,666 + AO356_29895 0.14 -0.4
6,952,704 + AO356_29895 0.18 +0.4
6,952,804 + AO356_29895 0.28 -0.9
6,952,815 + AO356_29895 0.30 +1.5
6,952,816 - AO356_29895 0.30 -0.2
6,952,816 - AO356_29895 0.30 +1.2
6,952,917 + AO356_29895 0.40 +0.3
6,952,917 + AO356_29895 0.40 +0.7
6,952,917 + AO356_29895 0.40 +0.1
6,952,917 + AO356_29895 0.40 +0.8
6,952,917 + AO356_29895 0.40 -0.3
6,952,917 + AO356_29895 0.40 +0.3
6,952,918 - AO356_29895 0.40 -0.1
6,952,918 - AO356_29895 0.40 +0.9
6,952,919 + AO356_29895 0.40 +0.9
6,952,919 + AO356_29895 0.40 -0.0
6,953,127 - AO356_29895 0.62 +1.3
6,953,130 + AO356_29895 0.62 +0.2
6,953,131 - +0.5
6,953,281 - AO356_29895 0.78 +0.7
6,953,290 - AO356_29895 0.79 -0.8
6,953,299 + AO356_29895 0.80 +0.3
6,953,300 - AO356_29895 0.80 +1.1
6,953,300 - AO356_29895 0.80 -0.2
6,953,303 + AO356_29895 0.80 -0.2
6,953,304 - AO356_29895 0.80 +0.1
6,953,304 - AO356_29895 0.80 -0.0
6,953,304 - AO356_29895 0.80 +0.8
6,953,511 + -0.5
6,953,618 + -0.0
6,953,618 + +0.9
6,953,619 - +0.6
6,953,619 - -0.3
6,953,625 + -0.4
6,953,625 + +0.5
6,953,707 + -0.7
6,953,862 - AO356_29900 0.15 +1.4
6,953,881 + AO356_29900 0.17 +0.4
6,953,881 + AO356_29900 0.17 +0.7
6,953,882 - AO356_29900 0.17 +0.8
6,953,882 - AO356_29900 0.17 +0.4
6,953,882 - AO356_29900 0.17 +0.2
6,953,882 - AO356_29900 0.17 +0.8
6,953,882 - AO356_29900 0.17 -0.6
6,953,928 + AO356_29900 0.21 +0.1
6,953,929 - AO356_29900 0.21 +0.3
6,954,047 + AO356_29900 0.31 +0.2
6,954,047 + AO356_29900 0.31 -1.4
6,954,082 + AO356_29900 0.34 -0.1
6,954,082 + AO356_29900 0.34 +0.4
6,954,083 - AO356_29900 0.34 -0.2
6,954,148 - AO356_29900 0.39 +1.6
6,954,148 - AO356_29900 0.39 +0.6
6,954,175 + AO356_29900 0.42 +1.6
6,954,176 - AO356_29900 0.42 -0.2
6,954,187 + AO356_29900 0.43 +0.3
6,954,187 + AO356_29900 0.43 +0.6
6,954,188 - AO356_29900 0.43 +0.3
6,954,286 - AO356_29900 0.51 +0.5
6,954,478 + AO356_29900 0.67 -0.2

Or see this region's nucleotide sequence