Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11770

Experiment: L-Isoleucine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_11760 and AO356_11765 are separated by 182 nucleotidesAO356_11765 and AO356_11770 are separated by 9 nucleotidesAO356_11770 and AO356_11775 are separated by 1 nucleotidesAO356_11775 and AO356_11780 are separated by 62 nucleotides AO356_11760: AO356_11760 - cytidyltransferase, at 2,663,034 to 2,663,591 _11760 AO356_11765: AO356_11765 - amidase, at 2,663,774 to 2,664,421 _11765 AO356_11770: AO356_11770 - nicotinate phosphoribosyltransferase, at 2,664,431 to 2,665,660 _11770 AO356_11775: AO356_11775 - NAD synthetase, at 2,665,662 to 2,666,492 _11775 AO356_11780: AO356_11780 - chemotaxis protein, at 2,666,555 to 2,668,444 _11780 Position (kb) 2664 2665 2666Strain fitness (log2 ratio) -2 -1 0 1 2at 2663.446 kb on + strand, within AO356_11760at 2663.446 kb on + strand, within AO356_11760at 2663.446 kb on + strand, within AO356_11760at 2663.446 kb on + strand, within AO356_11760at 2663.447 kb on - strand, within AO356_11760at 2663.447 kb on - strand, within AO356_11760at 2663.447 kb on - strand, within AO356_11760at 2663.447 kb on - strand, within AO356_11760at 2663.447 kb on - strand, within AO356_11760at 2663.447 kb on - strand, within AO356_11760at 2663.447 kb on - strand, within AO356_11760at 2663.447 kb on - strand, within AO356_11760at 2664.089 kb on + strand, within AO356_11765at 2664.089 kb on + strand, within AO356_11765at 2664.090 kb on - strand, within AO356_11765at 2664.090 kb on - strand, within AO356_11765at 2664.095 kb on + strand, within AO356_11765at 2664.096 kb on - strand, within AO356_11765at 2664.096 kb on - strand, within AO356_11765at 2664.096 kb on - strand, within AO356_11765at 2664.096 kb on - strand, within AO356_11765at 2664.147 kb on - strand, within AO356_11765at 2664.189 kb on - strand, within AO356_11765at 2664.189 kb on - strand, within AO356_11765at 2664.189 kb on - strand, within AO356_11765at 2664.488 kb on + strandat 2664.488 kb on + strandat 2664.488 kb on + strandat 2664.488 kb on + strandat 2664.488 kb on + strandat 2664.489 kb on - strandat 2664.489 kb on - strandat 2664.489 kb on - strandat 2664.489 kb on - strandat 2664.491 kb on + strandat 2664.491 kb on + strandat 2664.491 kb on + strandat 2664.491 kb on + strandat 2664.491 kb on + strandat 2664.491 kb on + strandat 2664.491 kb on + strandat 2664.491 kb on + strandat 2664.491 kb on + strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.492 kb on - strandat 2664.548 kb on + strandat 2664.548 kb on + strandat 2664.549 kb on - strandat 2664.549 kb on - strandat 2664.737 kb on + strand, within AO356_11770at 2664.738 kb on - strand, within AO356_11770at 2664.860 kb on + strand, within AO356_11770at 2664.860 kb on + strand, within AO356_11770at 2664.860 kb on + strand, within AO356_11770at 2664.861 kb on - strand, within AO356_11770at 2664.861 kb on - strand, within AO356_11770at 2664.899 kb on + strand, within AO356_11770at 2664.899 kb on + strand, within AO356_11770at 2664.899 kb on + strand, within AO356_11770at 2664.899 kb on + strand, within AO356_11770at 2664.900 kb on - strand, within AO356_11770at 2664.900 kb on - strand, within AO356_11770at 2665.194 kb on - strand, within AO356_11770at 2665.265 kb on + strand, within AO356_11770at 2665.265 kb on + strand, within AO356_11770at 2665.265 kb on + strand, within AO356_11770at 2665.265 kb on + strand, within AO356_11770at 2665.265 kb on + strand, within AO356_11770at 2665.265 kb on + strand, within AO356_11770at 2665.265 kb on + strand, within AO356_11770at 2665.265 kb on + strand, within AO356_11770at 2665.265 kb on + strand, within AO356_11770at 2665.266 kb on - strand, within AO356_11770at 2665.266 kb on - strand, within AO356_11770at 2665.266 kb on - strand, within AO356_11770at 2665.266 kb on - strand, within AO356_11770at 2665.266 kb on - strand, within AO356_11770at 2665.280 kb on + strand, within AO356_11770at 2665.280 kb on + strand, within AO356_11770at 2665.280 kb on + strand, within AO356_11770at 2665.281 kb on - strand, within AO356_11770at 2665.281 kb on - strand, within AO356_11770at 2665.369 kb on + strand, within AO356_11770at 2665.661 kb on + strandat 2665.661 kb on + strandat 2665.661 kb on + strandat 2665.661 kb on + strandat 2665.662 kb on - strandat 2665.662 kb on - strandat 2665.662 kb on - strandat 2665.662 kb on - strandat 2665.662 kb on - strandat 2665.662 kb on - strandat 2665.662 kb on - strandat 2665.765 kb on + strand, within AO356_11775at 2665.765 kb on + strand, within AO356_11775at 2665.766 kb on - strand, within AO356_11775at 2665.888 kb on - strand, within AO356_11775at 2665.920 kb on + strand, within AO356_11775at 2665.920 kb on + strand, within AO356_11775at 2665.921 kb on - strand, within AO356_11775at 2665.921 kb on - strand, within AO356_11775at 2665.921 kb on - strand, within AO356_11775at 2665.921 kb on - strand, within AO356_11775at 2666.118 kb on + strand, within AO356_11775at 2666.118 kb on + strand, within AO356_11775at 2666.119 kb on - strand, within AO356_11775at 2666.119 kb on - strand, within AO356_11775at 2666.119 kb on - strand, within AO356_11775at 2666.119 kb on - strand, within AO356_11775at 2666.134 kb on + strand, within AO356_11775at 2666.134 kb on + strand, within AO356_11775at 2666.134 kb on + strand, within AO356_11775at 2666.134 kb on + strand, within AO356_11775at 2666.134 kb on + strand, within AO356_11775at 2666.134 kb on + strand, within AO356_11775at 2666.134 kb on + strand, within AO356_11775at 2666.134 kb on + strand, within AO356_11775at 2666.134 kb on + strand, within AO356_11775at 2666.135 kb on - strand, within AO356_11775at 2666.135 kb on - strand, within AO356_11775at 2666.135 kb on - strand, within AO356_11775at 2666.135 kb on - strand, within AO356_11775at 2666.358 kb on + strand, within AO356_11775at 2666.359 kb on - strand, within AO356_11775at 2666.359 kb on - strand, within AO356_11775at 2666.359 kb on - strand, within AO356_11775at 2666.370 kb on + strand, within AO356_11775at 2666.371 kb on - strand, within AO356_11775at 2666.371 kb on - strand, within AO356_11775at 2666.371 kb on - strand, within AO356_11775at 2666.388 kb on + strand, within AO356_11775at 2666.388 kb on + strand, within AO356_11775at 2666.389 kb on - strand, within AO356_11775at 2666.389 kb on - strand, within AO356_11775at 2666.442 kb on + strandat 2666.442 kb on + strandat 2666.442 kb on + strandat 2666.442 kb on + strandat 2666.442 kb on + strandat 2666.442 kb on + strandat 2666.442 kb on + strandat 2666.443 kb on - strandat 2666.443 kb on - strandat 2666.443 kb on - strandat 2666.443 kb on - strandat 2666.443 kb on - strandat 2666.490 kb on + strandat 2666.491 kb on - strandat 2666.491 kb on - strandat 2666.491 kb on - strandat 2666.491 kb on - strandat 2666.491 kb on - strandat 2666.491 kb on - strandat 2666.491 kb on - strandat 2666.504 kb on + strandat 2666.504 kb on + strandat 2666.504 kb on + strandat 2666.504 kb on + strandat 2666.505 kb on - strandat 2666.505 kb on - strandat 2666.505 kb on - strandat 2666.505 kb on - strandat 2666.505 kb on - strandat 2666.569 kb on + strandat 2666.569 kb on + strandat 2666.569 kb on + strandat 2666.569 kb on + strandat 2666.569 kb on + strandat 2666.569 kb on + strandat 2666.570 kb on - strandat 2666.570 kb on - strandat 2666.570 kb on - strandat 2666.570 kb on - strandat 2666.570 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
remove
2,663,446 + AO356_11760 0.74 +1.0
2,663,446 + AO356_11760 0.74 +1.0
2,663,446 + AO356_11760 0.74 +1.8
2,663,446 + AO356_11760 0.74 +0.9
2,663,447 - AO356_11760 0.74 -0.2
2,663,447 - AO356_11760 0.74 +0.6
2,663,447 - AO356_11760 0.74 +0.7
2,663,447 - AO356_11760 0.74 +0.3
2,663,447 - AO356_11760 0.74 +0.4
2,663,447 - AO356_11760 0.74 +1.7
2,663,447 - AO356_11760 0.74 +0.5
2,663,447 - AO356_11760 0.74 +2.6
2,664,089 + AO356_11765 0.49 -1.3
2,664,089 + AO356_11765 0.49 +1.0
2,664,090 - AO356_11765 0.49 +1.1
2,664,090 - AO356_11765 0.49 +0.5
2,664,095 + AO356_11765 0.50 -0.3
2,664,096 - AO356_11765 0.50 +0.9
2,664,096 - AO356_11765 0.50 +0.0
2,664,096 - AO356_11765 0.50 +1.2
2,664,096 - AO356_11765 0.50 +0.5
2,664,147 - AO356_11765 0.58 -0.1
2,664,189 - AO356_11765 0.64 -0.5
2,664,189 - AO356_11765 0.64 -0.2
2,664,189 - AO356_11765 0.64 +0.3
2,664,488 + +0.1
2,664,488 + +0.2
2,664,488 + -0.8
2,664,488 + -1.0
2,664,488 + -0.7
2,664,489 - -0.6
2,664,489 - +0.6
2,664,489 - +0.7
2,664,489 - +1.3
2,664,491 + -0.3
2,664,491 + -0.3
2,664,491 + +0.1
2,664,491 + +1.9
2,664,491 + -1.2
2,664,491 + +0.2
2,664,491 + -0.8
2,664,491 + -0.2
2,664,491 + -0.3
2,664,492 - +0.4
2,664,492 - +0.2
2,664,492 - +0.0
2,664,492 - -0.2
2,664,492 - +0.2
2,664,492 - +0.8
2,664,492 - +0.3
2,664,492 - -0.3
2,664,492 - +0.4
2,664,492 - +0.4
2,664,492 - +0.6
2,664,492 - +0.9
2,664,492 - +0.6
2,664,492 - +0.5
2,664,492 - -0.3
2,664,492 - -0.1
2,664,492 - +1.0
2,664,548 + +0.7
2,664,548 + -0.7
2,664,549 - +0.3
2,664,549 - +0.5
2,664,737 + AO356_11770 0.25 +0.2
2,664,738 - AO356_11770 0.25 +0.4
2,664,860 + AO356_11770 0.35 -0.3
2,664,860 + AO356_11770 0.35 -0.2
2,664,860 + AO356_11770 0.35 -0.8
2,664,861 - AO356_11770 0.35 +0.4
2,664,861 - AO356_11770 0.35 -0.7
2,664,899 + AO356_11770 0.38 -1.4
2,664,899 + AO356_11770 0.38 -0.0
2,664,899 + AO356_11770 0.38 +0.2
2,664,899 + AO356_11770 0.38 +0.4
2,664,900 - AO356_11770 0.38 -0.0
2,664,900 - AO356_11770 0.38 +1.0
2,665,194 - AO356_11770 0.62 -0.8
2,665,265 + AO356_11770 0.68 +0.0
2,665,265 + AO356_11770 0.68 -0.7
2,665,265 + AO356_11770 0.68 -0.1
2,665,265 + AO356_11770 0.68 -0.4
2,665,265 + AO356_11770 0.68 +0.1
2,665,265 + AO356_11770 0.68 -0.3
2,665,265 + AO356_11770 0.68 +0.6
2,665,265 + AO356_11770 0.68 +0.1
2,665,265 + AO356_11770 0.68 -0.4
2,665,266 - AO356_11770 0.68 +0.0
2,665,266 - AO356_11770 0.68 +0.8
2,665,266 - AO356_11770 0.68 -2.1
2,665,266 - AO356_11770 0.68 +1.3
2,665,266 - AO356_11770 0.68 +0.6
2,665,280 + AO356_11770 0.69 +0.7
2,665,280 + AO356_11770 0.69 -1.0
2,665,280 + AO356_11770 0.69 +1.3
2,665,281 - AO356_11770 0.69 -0.3
2,665,281 - AO356_11770 0.69 +0.5
2,665,369 + AO356_11770 0.76 +0.9
2,665,661 + +0.6
2,665,661 + +0.4
2,665,661 + +0.0
2,665,661 + +0.9
2,665,662 - +0.4
2,665,662 - +0.5
2,665,662 - +0.7
2,665,662 - -0.1
2,665,662 - +1.0
2,665,662 - -1.5
2,665,662 - -0.3
2,665,765 + AO356_11775 0.12 +0.3
2,665,765 + AO356_11775 0.12 +0.4
2,665,766 - AO356_11775 0.13 -0.3
2,665,888 - AO356_11775 0.27 -0.3
2,665,920 + AO356_11775 0.31 -0.2
2,665,920 + AO356_11775 0.31 +0.3
2,665,921 - AO356_11775 0.31 +0.0
2,665,921 - AO356_11775 0.31 -0.0
2,665,921 - AO356_11775 0.31 +0.1
2,665,921 - AO356_11775 0.31 -1.4
2,666,118 + AO356_11775 0.55 -0.1
2,666,118 + AO356_11775 0.55 -1.0
2,666,119 - AO356_11775 0.55 -0.5
2,666,119 - AO356_11775 0.55 +1.0
2,666,119 - AO356_11775 0.55 -0.7
2,666,119 - AO356_11775 0.55 -0.9
2,666,134 + AO356_11775 0.57 +0.8
2,666,134 + AO356_11775 0.57 +0.4
2,666,134 + AO356_11775 0.57 -0.5
2,666,134 + AO356_11775 0.57 +0.0
2,666,134 + AO356_11775 0.57 +0.4
2,666,134 + AO356_11775 0.57 -0.1
2,666,134 + AO356_11775 0.57 +0.9
2,666,134 + AO356_11775 0.57 +0.3
2,666,134 + AO356_11775 0.57 +0.9
2,666,135 - AO356_11775 0.57 +0.8
2,666,135 - AO356_11775 0.57 +0.7
2,666,135 - AO356_11775 0.57 +0.1
2,666,135 - AO356_11775 0.57 +0.1
2,666,358 + AO356_11775 0.84 +0.0
2,666,359 - AO356_11775 0.84 -0.4
2,666,359 - AO356_11775 0.84 +0.9
2,666,359 - AO356_11775 0.84 +0.5
2,666,370 + AO356_11775 0.85 +0.3
2,666,371 - AO356_11775 0.85 -0.4
2,666,371 - AO356_11775 0.85 -0.8
2,666,371 - AO356_11775 0.85 +1.2
2,666,388 + AO356_11775 0.87 +0.2
2,666,388 + AO356_11775 0.87 +1.0
2,666,389 - AO356_11775 0.87 -0.4
2,666,389 - AO356_11775 0.87 +0.2
2,666,442 + +0.1
2,666,442 + -1.2
2,666,442 + +1.1
2,666,442 + -0.2
2,666,442 + -1.4
2,666,442 + -0.4
2,666,442 + -1.1
2,666,443 - +0.3
2,666,443 - +0.5
2,666,443 - -1.3
2,666,443 - +0.0
2,666,443 - +0.1
2,666,490 + +1.1
2,666,491 - +0.3
2,666,491 - +0.8
2,666,491 - +0.6
2,666,491 - +0.4
2,666,491 - -0.4
2,666,491 - -0.6
2,666,491 - +0.1
2,666,504 + -0.8
2,666,504 + -0.5
2,666,504 + -1.6
2,666,504 + -0.5
2,666,505 - +0.9
2,666,505 - -0.8
2,666,505 - +0.7
2,666,505 - +0.3
2,666,505 - -0.4
2,666,569 + +0.7
2,666,569 + -1.0
2,666,569 + +0.2
2,666,569 + -0.2
2,666,569 + +0.3
2,666,569 + -0.9
2,666,570 - -0.7
2,666,570 - -0.3
2,666,570 - +0.5
2,666,570 - -0.5
2,666,570 - -0.2

Or see this region's nucleotide sequence