Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_10035

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_10030 and AO356_10035 are separated by 253 nucleotidesAO356_10035 and AO356_10040 are separated by 209 nucleotides AO356_10030: AO356_10030 - Agmatine deiminase (EC 3.5.3.12) (from data), at 2,261,948 to 2,263,054 _10030 AO356_10035: AO356_10035 - hypothetical protein, at 2,263,308 to 2,266,220 _10035 AO356_10040: AO356_10040 - dTDP-glucose 4,6-dehydratase, at 2,266,430 to 2,267,512 _10040 Position (kb) 2263 2264 2265 2266 2267Strain fitness (log2 ratio) -2 -1 0 1at 2262.328 kb on - strand, within AO356_10030at 2262.328 kb on - strand, within AO356_10030at 2262.328 kb on - strand, within AO356_10030at 2262.384 kb on + strand, within AO356_10030at 2262.384 kb on + strand, within AO356_10030at 2262.384 kb on + strand, within AO356_10030at 2262.384 kb on + strand, within AO356_10030at 2262.384 kb on + strand, within AO356_10030at 2262.385 kb on - strand, within AO356_10030at 2262.385 kb on - strand, within AO356_10030at 2262.385 kb on - strand, within AO356_10030at 2262.385 kb on - strand, within AO356_10030at 2262.385 kb on - strand, within AO356_10030at 2262.678 kb on + strand, within AO356_10030at 2262.678 kb on + strand, within AO356_10030at 2262.678 kb on + strand, within AO356_10030at 2262.679 kb on - strand, within AO356_10030at 2262.679 kb on - strand, within AO356_10030at 2262.760 kb on + strand, within AO356_10030at 2262.760 kb on + strand, within AO356_10030at 2262.761 kb on - strand, within AO356_10030at 2263.098 kb on + strandat 2263.235 kb on + strandat 2263.235 kb on + strandat 2263.235 kb on + strandat 2263.235 kb on + strandat 2263.235 kb on + strandat 2263.235 kb on + strandat 2263.235 kb on + strandat 2263.235 kb on + strandat 2263.236 kb on - strandat 2263.236 kb on - strandat 2263.236 kb on - strandat 2263.238 kb on + strandat 2263.239 kb on - strandat 2263.239 kb on - strandat 2263.239 kb on - strandat 2263.239 kb on - strandat 2263.239 kb on - strandat 2263.326 kb on + strandat 2263.326 kb on + strandat 2263.327 kb on - strandat 2263.340 kb on + strandat 2263.340 kb on + strandat 2263.340 kb on + strandat 2263.341 kb on - strandat 2263.341 kb on - strandat 2263.341 kb on - strandat 2263.408 kb on + strandat 2263.409 kb on - strandat 2263.409 kb on - strandat 2263.525 kb on + strandat 2263.525 kb on + strandat 2263.525 kb on + strandat 2263.526 kb on - strandat 2263.708 kb on + strand, within AO356_10035at 2263.708 kb on + strand, within AO356_10035at 2263.708 kb on + strand, within AO356_10035at 2263.709 kb on - strand, within AO356_10035at 2263.709 kb on - strand, within AO356_10035at 2263.709 kb on - strand, within AO356_10035at 2263.883 kb on + strand, within AO356_10035at 2263.884 kb on - strand, within AO356_10035at 2263.915 kb on + strand, within AO356_10035at 2263.915 kb on + strand, within AO356_10035at 2263.915 kb on + strand, within AO356_10035at 2263.915 kb on + strand, within AO356_10035at 2263.916 kb on - strand, within AO356_10035at 2263.916 kb on - strand, within AO356_10035at 2263.930 kb on + strand, within AO356_10035at 2263.967 kb on - strand, within AO356_10035at 2263.967 kb on - strand, within AO356_10035at 2264.047 kb on + strand, within AO356_10035at 2264.047 kb on + strand, within AO356_10035at 2264.047 kb on + strand, within AO356_10035at 2264.048 kb on - strand, within AO356_10035at 2264.048 kb on - strand, within AO356_10035at 2264.048 kb on - strand, within AO356_10035at 2264.048 kb on - strand, within AO356_10035at 2264.048 kb on - strand, within AO356_10035at 2264.048 kb on - strand, within AO356_10035at 2264.048 kb on - strand, within AO356_10035at 2264.087 kb on - strand, within AO356_10035at 2264.087 kb on - strand, within AO356_10035at 2264.087 kb on - strand, within AO356_10035at 2264.087 kb on - strand, within AO356_10035at 2264.087 kb on - strand, within AO356_10035at 2264.197 kb on + strand, within AO356_10035at 2264.197 kb on + strand, within AO356_10035at 2264.198 kb on - strand, within AO356_10035at 2264.198 kb on - strand, within AO356_10035at 2264.533 kb on + strand, within AO356_10035at 2264.533 kb on + strand, within AO356_10035at 2264.533 kb on + strand, within AO356_10035at 2264.534 kb on - strand, within AO356_10035at 2264.534 kb on - strand, within AO356_10035at 2264.534 kb on - strand, within AO356_10035at 2264.534 kb on - strand, within AO356_10035at 2264.534 kb on - strand, within AO356_10035at 2264.534 kb on - strand, within AO356_10035at 2264.534 kb on - strand, within AO356_10035at 2264.536 kb on + strand, within AO356_10035at 2264.536 kb on + strand, within AO356_10035at 2264.536 kb on + strand, within AO356_10035at 2264.536 kb on + strand, within AO356_10035at 2264.536 kb on + strand, within AO356_10035at 2264.536 kb on + strand, within AO356_10035at 2264.536 kb on + strand, within AO356_10035at 2264.537 kb on - strand, within AO356_10035at 2264.537 kb on - strand, within AO356_10035at 2264.537 kb on - strand, within AO356_10035at 2264.537 kb on - strand, within AO356_10035at 2264.537 kb on - strand, within AO356_10035at 2264.537 kb on - strand, within AO356_10035at 2264.537 kb on - strand, within AO356_10035at 2264.537 kb on - strand, within AO356_10035at 2264.537 kb on - strand, within AO356_10035at 2264.628 kb on + strand, within AO356_10035at 2264.628 kb on + strand, within AO356_10035at 2264.629 kb on - strand, within AO356_10035at 2264.932 kb on + strand, within AO356_10035at 2264.932 kb on + strand, within AO356_10035at 2264.932 kb on + strand, within AO356_10035at 2264.932 kb on + strand, within AO356_10035at 2264.933 kb on - strand, within AO356_10035at 2264.933 kb on - strand, within AO356_10035at 2264.933 kb on - strand, within AO356_10035at 2264.980 kb on + strand, within AO356_10035at 2265.277 kb on + strand, within AO356_10035at 2265.277 kb on + strand, within AO356_10035at 2265.358 kb on - strand, within AO356_10035at 2265.400 kb on + strand, within AO356_10035at 2265.400 kb on + strand, within AO356_10035at 2265.401 kb on - strand, within AO356_10035at 2265.495 kb on - strand, within AO356_10035at 2265.703 kb on + strand, within AO356_10035at 2265.703 kb on + strand, within AO356_10035at 2265.703 kb on + strand, within AO356_10035at 2265.703 kb on + strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.704 kb on - strand, within AO356_10035at 2265.820 kb on - strand, within AO356_10035at 2265.871 kb on + strand, within AO356_10035at 2265.871 kb on + strand, within AO356_10035at 2265.871 kb on + strand, within AO356_10035at 2265.871 kb on + strand, within AO356_10035at 2265.872 kb on - strand, within AO356_10035at 2265.872 kb on - strand, within AO356_10035at 2266.011 kb on + strandat 2266.011 kb on + strandat 2266.011 kb on + strandat 2266.012 kb on - strandat 2266.012 kb on - strandat 2266.012 kb on - strandat 2266.012 kb on - strandat 2266.012 kb on - strandat 2266.027 kb on + strandat 2266.027 kb on + strandat 2266.027 kb on + strandat 2266.028 kb on - strandat 2266.081 kb on + strandat 2266.081 kb on + strandat 2266.081 kb on + strandat 2266.133 kb on - strandat 2266.208 kb on + strandat 2266.209 kb on - strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.220 kb on + strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.221 kb on - strandat 2266.255 kb on + strandat 2266.255 kb on + strandat 2266.255 kb on + strandat 2266.255 kb on + strandat 2266.255 kb on + strandat 2266.255 kb on + strandat 2266.256 kb on - strandat 2266.256 kb on - strandat 2266.256 kb on - strandat 2266.278 kb on + strandat 2266.279 kb on - strandat 2266.279 kb on - strandat 2266.301 kb on + strandat 2266.326 kb on + strandat 2266.327 kb on - strandat 2266.350 kb on + strandat 2266.385 kb on + strandat 2266.385 kb on + strandat 2266.385 kb on + strandat 2266.385 kb on + strandat 2266.385 kb on + strandat 2266.385 kb on + strandat 2266.385 kb on + strandat 2266.386 kb on - strandat 2266.386 kb on - strandat 2266.386 kb on - strandat 2266.386 kb on - strandat 2266.386 kb on - strandat 2266.386 kb on - strandat 2266.386 kb on - strandat 2266.386 kb on - strandat 2266.394 kb on + strandat 2266.394 kb on + strandat 2266.394 kb on + strandat 2266.395 kb on - strandat 2266.395 kb on - strandat 2266.395 kb on - strandat 2266.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,262,328 - AO356_10030 0.34 -0.1
2,262,328 - AO356_10030 0.34 +0.7
2,262,328 - AO356_10030 0.34 -0.6
2,262,384 + AO356_10030 0.39 +0.4
2,262,384 + AO356_10030 0.39 +0.7
2,262,384 + AO356_10030 0.39 +1.2
2,262,384 + AO356_10030 0.39 -0.1
2,262,384 + AO356_10030 0.39 -1.6
2,262,385 - AO356_10030 0.39 +1.0
2,262,385 - AO356_10030 0.39 -0.4
2,262,385 - AO356_10030 0.39 +1.4
2,262,385 - AO356_10030 0.39 +0.2
2,262,385 - AO356_10030 0.39 +0.3
2,262,678 + AO356_10030 0.66 -0.3
2,262,678 + AO356_10030 0.66 +0.8
2,262,678 + AO356_10030 0.66 -0.4
2,262,679 - AO356_10030 0.66 -0.1
2,262,679 - AO356_10030 0.66 +0.4
2,262,760 + AO356_10030 0.73 +0.5
2,262,760 + AO356_10030 0.73 -0.3
2,262,761 - AO356_10030 0.73 +0.3
2,263,098 + +0.4
2,263,235 + -0.3
2,263,235 + -0.2
2,263,235 + +0.7
2,263,235 + -0.4
2,263,235 + +0.7
2,263,235 + -0.2
2,263,235 + -0.0
2,263,235 + +1.0
2,263,236 - +0.2
2,263,236 - +0.1
2,263,236 - -0.1
2,263,238 + +0.4
2,263,239 - -1.9
2,263,239 - -0.3
2,263,239 - +0.2
2,263,239 - -0.0
2,263,239 - +0.2
2,263,326 + +0.4
2,263,326 + -0.2
2,263,327 - +0.0
2,263,340 + +0.2
2,263,340 + +0.4
2,263,340 + -0.1
2,263,341 - -0.2
2,263,341 - +0.3
2,263,341 - -0.6
2,263,408 + +0.7
2,263,409 - -0.5
2,263,409 - +0.9
2,263,525 + -0.5
2,263,525 + +0.3
2,263,525 + -0.9
2,263,526 - +0.1
2,263,708 + AO356_10035 0.14 +0.1
2,263,708 + AO356_10035 0.14 +0.6
2,263,708 + AO356_10035 0.14 -2.3
2,263,709 - AO356_10035 0.14 -0.1
2,263,709 - AO356_10035 0.14 -0.1
2,263,709 - AO356_10035 0.14 -0.4
2,263,883 + AO356_10035 0.20 -0.4
2,263,884 - AO356_10035 0.20 +1.7
2,263,915 + AO356_10035 0.21 +0.6
2,263,915 + AO356_10035 0.21 -0.7
2,263,915 + AO356_10035 0.21 +0.6
2,263,915 + AO356_10035 0.21 -0.5
2,263,916 - AO356_10035 0.21 +0.2
2,263,916 - AO356_10035 0.21 +0.2
2,263,930 + AO356_10035 0.21 -0.7
2,263,967 - AO356_10035 0.23 -1.2
2,263,967 - AO356_10035 0.23 -1.1
2,264,047 + AO356_10035 0.25 -0.8
2,264,047 + AO356_10035 0.25 -0.7
2,264,047 + AO356_10035 0.25 -0.1
2,264,048 - AO356_10035 0.25 +0.5
2,264,048 - AO356_10035 0.25 -0.4
2,264,048 - AO356_10035 0.25 +0.4
2,264,048 - AO356_10035 0.25 +0.0
2,264,048 - AO356_10035 0.25 +0.4
2,264,048 - AO356_10035 0.25 +0.4
2,264,048 - AO356_10035 0.25 +0.3
2,264,087 - AO356_10035 0.27 -0.1
2,264,087 - AO356_10035 0.27 -0.2
2,264,087 - AO356_10035 0.27 +0.9
2,264,087 - AO356_10035 0.27 +0.8
2,264,087 - AO356_10035 0.27 -0.1
2,264,197 + AO356_10035 0.31 -0.1
2,264,197 + AO356_10035 0.31 +0.5
2,264,198 - AO356_10035 0.31 -0.1
2,264,198 - AO356_10035 0.31 -0.6
2,264,533 + AO356_10035 0.42 +0.2
2,264,533 + AO356_10035 0.42 -0.7
2,264,533 + AO356_10035 0.42 +0.3
2,264,534 - AO356_10035 0.42 -0.2
2,264,534 - AO356_10035 0.42 -0.4
2,264,534 - AO356_10035 0.42 -0.6
2,264,534 - AO356_10035 0.42 -1.1
2,264,534 - AO356_10035 0.42 -0.2
2,264,534 - AO356_10035 0.42 -0.5
2,264,534 - AO356_10035 0.42 +0.6
2,264,536 + AO356_10035 0.42 -0.1
2,264,536 + AO356_10035 0.42 -0.4
2,264,536 + AO356_10035 0.42 +0.4
2,264,536 + AO356_10035 0.42 +1.4
2,264,536 + AO356_10035 0.42 -0.1
2,264,536 + AO356_10035 0.42 -0.6
2,264,536 + AO356_10035 0.42 +0.3
2,264,537 - AO356_10035 0.42 -0.5
2,264,537 - AO356_10035 0.42 -0.3
2,264,537 - AO356_10035 0.42 +0.3
2,264,537 - AO356_10035 0.42 +0.1
2,264,537 - AO356_10035 0.42 +0.2
2,264,537 - AO356_10035 0.42 -0.3
2,264,537 - AO356_10035 0.42 -0.5
2,264,537 - AO356_10035 0.42 -2.6
2,264,537 - AO356_10035 0.42 -0.0
2,264,628 + AO356_10035 0.45 -0.0
2,264,628 + AO356_10035 0.45 +0.2
2,264,629 - AO356_10035 0.45 -0.6
2,264,932 + AO356_10035 0.56 -0.4
2,264,932 + AO356_10035 0.56 -0.6
2,264,932 + AO356_10035 0.56 +0.5
2,264,932 + AO356_10035 0.56 +0.5
2,264,933 - AO356_10035 0.56 +0.4
2,264,933 - AO356_10035 0.56 +0.4
2,264,933 - AO356_10035 0.56 +1.2
2,264,980 + AO356_10035 0.57 +0.5
2,265,277 + AO356_10035 0.68 +1.1
2,265,277 + AO356_10035 0.68 +0.3
2,265,358 - AO356_10035 0.70 -2.3
2,265,400 + AO356_10035 0.72 +0.6
2,265,400 + AO356_10035 0.72 -0.2
2,265,401 - AO356_10035 0.72 +1.3
2,265,495 - AO356_10035 0.75 +0.5
2,265,703 + AO356_10035 0.82 -0.0
2,265,703 + AO356_10035 0.82 +0.1
2,265,703 + AO356_10035 0.82 -0.4
2,265,703 + AO356_10035 0.82 -0.7
2,265,704 - AO356_10035 0.82 -0.3
2,265,704 - AO356_10035 0.82 -1.9
2,265,704 - AO356_10035 0.82 +1.0
2,265,704 - AO356_10035 0.82 -0.5
2,265,704 - AO356_10035 0.82 +1.3
2,265,704 - AO356_10035 0.82 -0.6
2,265,704 - AO356_10035 0.82 -0.4
2,265,704 - AO356_10035 0.82 -1.4
2,265,820 - AO356_10035 0.86 +1.0
2,265,871 + AO356_10035 0.88 +0.5
2,265,871 + AO356_10035 0.88 +0.1
2,265,871 + AO356_10035 0.88 +0.7
2,265,871 + AO356_10035 0.88 -0.3
2,265,872 - AO356_10035 0.88 +0.4
2,265,872 - AO356_10035 0.88 +0.5
2,266,011 + +0.3
2,266,011 + +0.1
2,266,011 + +0.8
2,266,012 - -0.3
2,266,012 - -0.3
2,266,012 - +0.4
2,266,012 - -0.5
2,266,012 - +0.0
2,266,027 + -0.2
2,266,027 + -0.4
2,266,027 + -0.0
2,266,028 - -0.3
2,266,081 + +0.1
2,266,081 + +0.3
2,266,081 + +0.3
2,266,133 - +0.6
2,266,208 + +0.2
2,266,209 - +0.0
2,266,220 + -2.1
2,266,220 + +0.7
2,266,220 + +0.3
2,266,220 + -0.8
2,266,220 + -1.4
2,266,220 + +0.7
2,266,220 + +0.3
2,266,220 + -0.1
2,266,220 + -0.0
2,266,220 + +0.4
2,266,220 + +0.4
2,266,221 - +0.3
2,266,221 - +0.4
2,266,221 - +0.6
2,266,221 - +0.3
2,266,221 - -0.2
2,266,221 - -0.6
2,266,221 - +1.0
2,266,221 - +0.5
2,266,221 - -0.4
2,266,255 + +0.3
2,266,255 + +0.9
2,266,255 + +0.8
2,266,255 + +0.6
2,266,255 + +0.0
2,266,255 + -0.1
2,266,256 - -0.6
2,266,256 - +0.3
2,266,256 - +0.1
2,266,278 + +0.1
2,266,279 - +0.8
2,266,279 - -0.6
2,266,301 + -0.4
2,266,326 + +0.4
2,266,327 - -1.1
2,266,350 + +1.0
2,266,385 + -0.2
2,266,385 + +0.1
2,266,385 + +1.2
2,266,385 + +0.3
2,266,385 + +0.2
2,266,385 + -0.0
2,266,385 + -0.0
2,266,386 - -0.2
2,266,386 - +0.8
2,266,386 - -0.5
2,266,386 - +0.1
2,266,386 - -0.5
2,266,386 - +0.8
2,266,386 - -0.0
2,266,386 - +0.8
2,266,394 + +0.1
2,266,394 + +1.5
2,266,394 + +0.1
2,266,395 - +0.9
2,266,395 - +1.1
2,266,395 - +0.8
2,266,423 + +1.4

Or see this region's nucleotide sequence