Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_07855

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_07850 and AO356_07855 overlap by 4 nucleotidesAO356_07855 and AO356_07860 are separated by 11 nucleotides AO356_07850: AO356_07850 - hypothetical protein, at 1,753,106 to 1,754,410 _07850 AO356_07855: AO356_07855 - hypothetical protein, at 1,754,407 to 1,755,468 _07855 AO356_07860: AO356_07860 - hypothetical protein, at 1,755,480 to 1,756,442 _07860 Position (kb) 1754 1755 1756Strain fitness (log2 ratio) -2 -1 0 1 2at 1753.465 kb on + strand, within AO356_07850at 1753.465 kb on + strand, within AO356_07850at 1753.465 kb on + strand, within AO356_07850at 1753.467 kb on + strand, within AO356_07850at 1753.468 kb on - strand, within AO356_07850at 1753.618 kb on - strand, within AO356_07850at 1753.618 kb on - strand, within AO356_07850at 1753.656 kb on + strand, within AO356_07850at 1753.656 kb on + strand, within AO356_07850at 1753.656 kb on + strand, within AO356_07850at 1753.657 kb on - strand, within AO356_07850at 1753.657 kb on - strand, within AO356_07850at 1753.693 kb on - strand, within AO356_07850at 1753.716 kb on + strand, within AO356_07850at 1753.716 kb on + strand, within AO356_07850at 1753.716 kb on + strand, within AO356_07850at 1753.716 kb on + strand, within AO356_07850at 1753.716 kb on + strand, within AO356_07850at 1753.716 kb on + strand, within AO356_07850at 1753.716 kb on + strand, within AO356_07850at 1753.717 kb on - strand, within AO356_07850at 1753.752 kb on + strand, within AO356_07850at 1753.818 kb on + strand, within AO356_07850at 1753.818 kb on + strand, within AO356_07850at 1753.818 kb on + strand, within AO356_07850at 1753.819 kb on - strand, within AO356_07850at 1753.912 kb on + strand, within AO356_07850at 1753.912 kb on + strand, within AO356_07850at 1753.913 kb on - strand, within AO356_07850at 1753.918 kb on + strand, within AO356_07850at 1753.918 kb on + strand, within AO356_07850at 1753.918 kb on + strand, within AO356_07850at 1753.919 kb on - strand, within AO356_07850at 1753.919 kb on - strand, within AO356_07850at 1753.919 kb on - strand, within AO356_07850at 1753.919 kb on - strand, within AO356_07850at 1753.924 kb on + strand, within AO356_07850at 1753.925 kb on - strand, within AO356_07850at 1753.925 kb on - strand, within AO356_07850at 1753.925 kb on - strand, within AO356_07850at 1753.925 kb on - strand, within AO356_07850at 1753.925 kb on - strand, within AO356_07850at 1753.925 kb on - strand, within AO356_07850at 1753.925 kb on - strand, within AO356_07850at 1753.925 kb on - strand, within AO356_07850at 1753.925 kb on - strand, within AO356_07850at 1753.985 kb on + strand, within AO356_07850at 1753.986 kb on - strand, within AO356_07850at 1753.986 kb on - strand, within AO356_07850at 1754.196 kb on + strand, within AO356_07850at 1754.235 kb on + strand, within AO356_07850at 1754.236 kb on - strand, within AO356_07850at 1754.280 kb on + strandat 1754.280 kb on + strandat 1754.280 kb on + strandat 1754.280 kb on + strandat 1754.281 kb on - strandat 1754.281 kb on - strandat 1754.281 kb on - strandat 1754.281 kb on - strandat 1754.338 kb on + strandat 1754.338 kb on + strandat 1754.339 kb on - strandat 1754.370 kb on + strandat 1754.371 kb on - strandat 1754.401 kb on + strandat 1754.403 kb on + strandat 1754.403 kb on + strandat 1754.403 kb on + strandat 1754.403 kb on + strandat 1754.404 kb on - strandat 1754.404 kb on - strandat 1754.404 kb on - strandat 1754.404 kb on - strandat 1754.404 kb on - strandat 1754.448 kb on + strandat 1754.458 kb on - strandat 1754.472 kb on + strandat 1754.473 kb on - strandat 1754.479 kb on - strandat 1754.479 kb on - strandat 1754.530 kb on - strand, within AO356_07855at 1754.530 kb on - strand, within AO356_07855at 1754.530 kb on - strand, within AO356_07855at 1754.530 kb on - strand, within AO356_07855at 1754.531 kb on + strand, within AO356_07855at 1754.531 kb on + strand, within AO356_07855at 1754.531 kb on + strand, within AO356_07855at 1754.532 kb on - strand, within AO356_07855at 1754.532 kb on - strand, within AO356_07855at 1754.532 kb on - strand, within AO356_07855at 1754.634 kb on - strand, within AO356_07855at 1754.732 kb on + strand, within AO356_07855at 1754.732 kb on + strand, within AO356_07855at 1754.732 kb on + strand, within AO356_07855at 1754.733 kb on - strand, within AO356_07855at 1754.733 kb on - strand, within AO356_07855at 1754.733 kb on - strand, within AO356_07855at 1754.733 kb on - strand, within AO356_07855at 1754.809 kb on + strand, within AO356_07855at 1754.810 kb on - strand, within AO356_07855at 1754.810 kb on - strand, within AO356_07855at 1754.900 kb on + strand, within AO356_07855at 1754.900 kb on + strand, within AO356_07855at 1754.900 kb on + strand, within AO356_07855at 1754.900 kb on + strand, within AO356_07855at 1754.901 kb on - strand, within AO356_07855at 1754.901 kb on - strand, within AO356_07855at 1754.901 kb on - strand, within AO356_07855at 1754.901 kb on - strand, within AO356_07855at 1754.961 kb on - strand, within AO356_07855at 1754.961 kb on - strand, within AO356_07855at 1754.966 kb on + strand, within AO356_07855at 1754.967 kb on - strand, within AO356_07855at 1754.967 kb on - strand, within AO356_07855at 1754.988 kb on - strand, within AO356_07855at 1754.988 kb on - strand, within AO356_07855at 1755.080 kb on + strand, within AO356_07855at 1755.080 kb on + strand, within AO356_07855at 1755.080 kb on + strand, within AO356_07855at 1755.080 kb on + strand, within AO356_07855at 1755.081 kb on - strand, within AO356_07855at 1755.081 kb on - strand, within AO356_07855at 1755.081 kb on - strand, within AO356_07855at 1755.206 kb on + strand, within AO356_07855at 1755.206 kb on + strand, within AO356_07855at 1755.206 kb on + strand, within AO356_07855at 1755.207 kb on - strand, within AO356_07855at 1755.207 kb on - strand, within AO356_07855at 1755.222 kb on - strand, within AO356_07855at 1755.238 kb on + strand, within AO356_07855at 1755.238 kb on + strand, within AO356_07855at 1755.238 kb on + strand, within AO356_07855at 1755.239 kb on - strand, within AO356_07855at 1755.239 kb on - strand, within AO356_07855at 1755.239 kb on - strand, within AO356_07855at 1755.329 kb on + strand, within AO356_07855at 1755.329 kb on + strand, within AO356_07855at 1755.329 kb on + strand, within AO356_07855at 1755.330 kb on - strand, within AO356_07855at 1755.330 kb on - strand, within AO356_07855at 1755.342 kb on - strand, within AO356_07855at 1755.462 kb on + strandat 1755.462 kb on + strandat 1755.462 kb on + strandat 1755.468 kb on + strandat 1755.468 kb on + strandat 1755.468 kb on + strandat 1755.468 kb on + strandat 1755.469 kb on - strandat 1755.469 kb on - strandat 1755.482 kb on - strandat 1755.517 kb on + strandat 1755.517 kb on + strandat 1755.517 kb on + strandat 1755.517 kb on + strandat 1755.517 kb on + strandat 1755.518 kb on - strandat 1755.518 kb on - strandat 1755.518 kb on - strandat 1755.518 kb on - strandat 1755.518 kb on - strandat 1755.518 kb on - strandat 1755.641 kb on + strand, within AO356_07860at 1755.642 kb on - strand, within AO356_07860at 1755.642 kb on - strand, within AO356_07860at 1755.642 kb on - strand, within AO356_07860at 1755.642 kb on - strand, within AO356_07860at 1755.797 kb on - strand, within AO356_07860at 1755.797 kb on - strand, within AO356_07860at 1755.851 kb on - strand, within AO356_07860at 1755.852 kb on + strand, within AO356_07860at 1755.852 kb on + strand, within AO356_07860at 1755.853 kb on - strand, within AO356_07860at 1755.853 kb on - strand, within AO356_07860at 1755.875 kb on + strand, within AO356_07860at 1755.917 kb on + strand, within AO356_07860at 1755.917 kb on + strand, within AO356_07860at 1755.917 kb on + strand, within AO356_07860at 1755.918 kb on - strand, within AO356_07860at 1755.939 kb on + strand, within AO356_07860at 1755.948 kb on - strand, within AO356_07860at 1755.976 kb on + strand, within AO356_07860at 1756.038 kb on - strand, within AO356_07860at 1756.116 kb on + strand, within AO356_07860at 1756.117 kb on - strand, within AO356_07860at 1756.178 kb on - strand, within AO356_07860at 1756.178 kb on - strand, within AO356_07860at 1756.178 kb on - strand, within AO356_07860at 1756.178 kb on - strand, within AO356_07860at 1756.178 kb on - strand, within AO356_07860at 1756.231 kb on + strand, within AO356_07860at 1756.231 kb on + strand, within AO356_07860at 1756.232 kb on - strand, within AO356_07860at 1756.232 kb on - strand, within AO356_07860at 1756.232 kb on - strand, within AO356_07860at 1756.266 kb on + strand, within AO356_07860at 1756.311 kb on - strand, within AO356_07860at 1756.311 kb on - strand, within AO356_07860at 1756.311 kb on - strand, within AO356_07860at 1756.312 kb on + strand, within AO356_07860at 1756.313 kb on - strand, within AO356_07860at 1756.427 kb on + strandat 1756.428 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,753,465 + AO356_07850 0.28 -0.0
1,753,465 + AO356_07850 0.28 -0.0
1,753,465 + AO356_07850 0.28 -1.9
1,753,467 + AO356_07850 0.28 -0.0
1,753,468 - AO356_07850 0.28 +0.6
1,753,618 - AO356_07850 0.39 +0.3
1,753,618 - AO356_07850 0.39 +0.5
1,753,656 + AO356_07850 0.42 -1.3
1,753,656 + AO356_07850 0.42 -1.0
1,753,656 + AO356_07850 0.42 -0.8
1,753,657 - AO356_07850 0.42 -0.1
1,753,657 - AO356_07850 0.42 -0.3
1,753,693 - AO356_07850 0.45 +1.0
1,753,716 + AO356_07850 0.47 -0.8
1,753,716 + AO356_07850 0.47 -0.1
1,753,716 + AO356_07850 0.47 +0.1
1,753,716 + AO356_07850 0.47 -0.3
1,753,716 + AO356_07850 0.47 -0.6
1,753,716 + AO356_07850 0.47 -1.3
1,753,716 + AO356_07850 0.47 +0.1
1,753,717 - AO356_07850 0.47 -0.9
1,753,752 + AO356_07850 0.50 -0.3
1,753,818 + AO356_07850 0.55 -0.6
1,753,818 + AO356_07850 0.55 +0.1
1,753,818 + AO356_07850 0.55 +0.8
1,753,819 - AO356_07850 0.55 +0.8
1,753,912 + AO356_07850 0.62 -0.0
1,753,912 + AO356_07850 0.62 -0.8
1,753,913 - AO356_07850 0.62 -0.5
1,753,918 + AO356_07850 0.62 -0.1
1,753,918 + AO356_07850 0.62 +0.3
1,753,918 + AO356_07850 0.62 -0.7
1,753,919 - AO356_07850 0.62 +0.9
1,753,919 - AO356_07850 0.62 +0.2
1,753,919 - AO356_07850 0.62 -0.1
1,753,919 - AO356_07850 0.62 +0.1
1,753,924 + AO356_07850 0.63 -1.0
1,753,925 - AO356_07850 0.63 +0.9
1,753,925 - AO356_07850 0.63 +0.4
1,753,925 - AO356_07850 0.63 -1.1
1,753,925 - AO356_07850 0.63 -0.3
1,753,925 - AO356_07850 0.63 +0.5
1,753,925 - AO356_07850 0.63 +0.4
1,753,925 - AO356_07850 0.63 -0.1
1,753,925 - AO356_07850 0.63 -0.4
1,753,925 - AO356_07850 0.63 +0.6
1,753,985 + AO356_07850 0.67 -0.5
1,753,986 - AO356_07850 0.67 -0.0
1,753,986 - AO356_07850 0.67 -0.2
1,754,196 + AO356_07850 0.84 -0.0
1,754,235 + AO356_07850 0.87 -0.4
1,754,236 - AO356_07850 0.87 -0.6
1,754,280 + -0.5
1,754,280 + -0.2
1,754,280 + -0.6
1,754,280 + -0.4
1,754,281 - -0.9
1,754,281 - -0.7
1,754,281 - +0.3
1,754,281 - -1.0
1,754,338 + -0.6
1,754,338 + +0.4
1,754,339 - +0.2
1,754,370 + -0.2
1,754,371 - -0.6
1,754,401 + +0.1
1,754,403 + -0.8
1,754,403 + -0.5
1,754,403 + -1.0
1,754,403 + +0.4
1,754,404 - +0.4
1,754,404 - -0.4
1,754,404 - -0.2
1,754,404 - +0.0
1,754,404 - -1.4
1,754,448 + -0.8
1,754,458 - +0.6
1,754,472 + -1.8
1,754,473 - -1.4
1,754,479 - +1.0
1,754,479 - -0.5
1,754,530 - AO356_07855 0.12 +0.2
1,754,530 - AO356_07855 0.12 -0.2
1,754,530 - AO356_07855 0.12 -0.4
1,754,530 - AO356_07855 0.12 +0.2
1,754,531 + AO356_07855 0.12 -0.2
1,754,531 + AO356_07855 0.12 -1.5
1,754,531 + AO356_07855 0.12 -0.1
1,754,532 - AO356_07855 0.12 -0.1
1,754,532 - AO356_07855 0.12 +0.0
1,754,532 - AO356_07855 0.12 +0.1
1,754,634 - AO356_07855 0.21 -0.0
1,754,732 + AO356_07855 0.31 +0.1
1,754,732 + AO356_07855 0.31 -0.0
1,754,732 + AO356_07855 0.31 -0.9
1,754,733 - AO356_07855 0.31 +0.4
1,754,733 - AO356_07855 0.31 +0.9
1,754,733 - AO356_07855 0.31 +0.6
1,754,733 - AO356_07855 0.31 +1.0
1,754,809 + AO356_07855 0.38 -0.9
1,754,810 - AO356_07855 0.38 +0.4
1,754,810 - AO356_07855 0.38 +0.1
1,754,900 + AO356_07855 0.46 -0.6
1,754,900 + AO356_07855 0.46 -0.4
1,754,900 + AO356_07855 0.46 -0.0
1,754,900 + AO356_07855 0.46 -1.2
1,754,901 - AO356_07855 0.47 +0.4
1,754,901 - AO356_07855 0.47 +0.1
1,754,901 - AO356_07855 0.47 -0.3
1,754,901 - AO356_07855 0.47 +0.2
1,754,961 - AO356_07855 0.52 +0.5
1,754,961 - AO356_07855 0.52 -0.7
1,754,966 + AO356_07855 0.53 -2.1
1,754,967 - AO356_07855 0.53 +0.5
1,754,967 - AO356_07855 0.53 +0.3
1,754,988 - AO356_07855 0.55 +0.6
1,754,988 - AO356_07855 0.55 -0.0
1,755,080 + AO356_07855 0.63 -0.8
1,755,080 + AO356_07855 0.63 -0.3
1,755,080 + AO356_07855 0.63 +0.1
1,755,080 + AO356_07855 0.63 -0.1
1,755,081 - AO356_07855 0.63 -0.1
1,755,081 - AO356_07855 0.63 -0.9
1,755,081 - AO356_07855 0.63 +2.4
1,755,206 + AO356_07855 0.75 -0.0
1,755,206 + AO356_07855 0.75 +0.3
1,755,206 + AO356_07855 0.75 -0.8
1,755,207 - AO356_07855 0.75 +0.5
1,755,207 - AO356_07855 0.75 +0.3
1,755,222 - AO356_07855 0.77 +0.5
1,755,238 + AO356_07855 0.78 +1.1
1,755,238 + AO356_07855 0.78 -2.4
1,755,238 + AO356_07855 0.78 -0.8
1,755,239 - AO356_07855 0.78 -0.8
1,755,239 - AO356_07855 0.78 -0.2
1,755,239 - AO356_07855 0.78 -0.2
1,755,329 + AO356_07855 0.87 -0.1
1,755,329 + AO356_07855 0.87 -0.6
1,755,329 + AO356_07855 0.87 -1.1
1,755,330 - AO356_07855 0.87 +0.7
1,755,330 - AO356_07855 0.87 +0.8
1,755,342 - AO356_07855 0.88 +1.9
1,755,462 + -1.1
1,755,462 + -0.4
1,755,462 + -1.1
1,755,468 + +0.1
1,755,468 + -0.8
1,755,468 + -1.6
1,755,468 + +0.3
1,755,469 - -0.8
1,755,469 - +0.2
1,755,482 - +0.4
1,755,517 + +0.4
1,755,517 + -0.1
1,755,517 + -1.4
1,755,517 + -0.2
1,755,517 + -0.2
1,755,518 - +0.3
1,755,518 - -1.0
1,755,518 - +0.4
1,755,518 - +1.1
1,755,518 - -0.6
1,755,518 - +0.1
1,755,641 + AO356_07860 0.17 +0.1
1,755,642 - AO356_07860 0.17 +0.3
1,755,642 - AO356_07860 0.17 -0.9
1,755,642 - AO356_07860 0.17 -0.1
1,755,642 - AO356_07860 0.17 +0.0
1,755,797 - AO356_07860 0.33 +0.3
1,755,797 - AO356_07860 0.33 +0.5
1,755,851 - AO356_07860 0.39 -0.0
1,755,852 + AO356_07860 0.39 -0.3
1,755,852 + AO356_07860 0.39 -1.1
1,755,853 - AO356_07860 0.39 -1.2
1,755,853 - AO356_07860 0.39 -0.3
1,755,875 + AO356_07860 0.41 +1.0
1,755,917 + AO356_07860 0.45 -0.3
1,755,917 + AO356_07860 0.45 -0.2
1,755,917 + AO356_07860 0.45 -0.5
1,755,918 - AO356_07860 0.45 +0.5
1,755,939 + AO356_07860 0.48 -0.0
1,755,948 - AO356_07860 0.49 -0.6
1,755,976 + AO356_07860 0.52 +0.4
1,756,038 - AO356_07860 0.58 -0.0
1,756,116 + AO356_07860 0.66 -0.4
1,756,117 - AO356_07860 0.66 -0.2
1,756,178 - AO356_07860 0.72 +0.3
1,756,178 - AO356_07860 0.72 -0.3
1,756,178 - AO356_07860 0.72 +0.4
1,756,178 - AO356_07860 0.72 +0.5
1,756,178 - AO356_07860 0.72 +0.8
1,756,231 + AO356_07860 0.78 -1.6
1,756,231 + AO356_07860 0.78 -1.8
1,756,232 - AO356_07860 0.78 -0.3
1,756,232 - AO356_07860 0.78 +0.1
1,756,232 - AO356_07860 0.78 +0.5
1,756,266 + AO356_07860 0.82 -1.0
1,756,311 - AO356_07860 0.86 +0.1
1,756,311 - AO356_07860 0.86 +0.4
1,756,311 - AO356_07860 0.86 +0.4
1,756,312 + AO356_07860 0.86 -0.5
1,756,313 - AO356_07860 0.87 +0.1
1,756,427 + +0.4
1,756,428 - +0.3

Or see this region's nucleotide sequence